M. Nishizawa

发表

Potential of mean force analysis of the self-association of leucine-rich transmembrane α-helices: difference between atomistic and coarse-grained simulations.

M. Nishizawa, K. Nishizawa, 2014, The Journal of chemical physics.

Curvature-driven lipid sorting: coarse-grained dynamics simulations of a membrane mimicking a hemifusion intermediate

M. Nishizawa, K. Nishizawa, 2010 .

Local‐scale repetitiveness in amino acid use in eukaryote protein sequences: A genomic factor in protein evolution

M. Nishizawa, K. Nishizawa, M Nishizawa, 1999, Proteins.

Free energy of helical transmembrane peptide dimerization in OPLS-AA/Berger force field simulations: inaccuracy and implications for partner-specific Lennard-Jones parameters between peptides and lipids

M. Nishizawa, K. Nishizawa, 2016 .

Coarse-grained simulations of branched bilayer membranes: effects of cholesterol-dependent phase separation on curvature-driven lipid sorting

M. Nishizawa, K. Nishizawa, 2011 .

Why have cholesterol and saturated fatty acids acquired proinflammatory roles during evolution? – A hypothesis from atomistic simulations showing sequence-nonspecific stabilization of peptide dimers in lipid raft-like bilayers

M. Nishizawa, K. Nishizawa, 2017 .

On Slippage-Like Mutation Dynamics Within Genes: A Study of Pseudogenes and 3′UTRs

M. Nishizawa, K. Nishizawa, 2005, Journal of Molecular Evolution.

Atomistic Simulation Analyses of Sequence-nonspecific Effects of Lipid Composition on Transmembrane Helical Peptide Dimerization

M. Nishizawa, K. Nishizawa, 2019, Annals of Biomedical Research.

Amino acid and nucleotide recurrence in aligned sequences: synonymous substitution patterns in association with global and local base compositions.

M. Nishizawa, K. Nishizawa, 2000, Nucleic acids research.

Tendency for local repetitiveness in amino acid usages in modern proteins.

K. Kim, M. Nishizawa, K. Nishizawa, 1999, Journal of molecular biology.

Biased Usages of Arginines and Lysines in Proteins Are Correlated with Local-Scale Fluctuations of the G + C Content of DNA Sequences

M. Nishizawa, K. Nishizawa, Kazuhisa Nishizawa, 1998, Journal of Molecular Evolution.

Molecular dynamics simulation of Kv channel voltage sensor helix in a lipid membrane with applied electric field.

M. Nishizawa, K. Nishizawa, 2008, Biophysical journal.

The hydrophobic nature of a novel membrane interface regulates the enzyme activity of a voltage-sensing phosphatase

Y. Okamura, A. Nakagawa, M. Nishizawa, 2018, eLife.

Effects of Lys to Glu mutations in GsMTx4 on membrane binding, peptide orientation, and self-association propensity, as analyzed by molecular dynamics simulations.

F. Sachs, S. Sukharev, M. Nishizawa, 2015, Biochimica et biophysica acta.

Molecular dynamics simulation analyses of viral fusion peptides in membranes prone to phase transition: effects on membrane curvature, phase behavior and lipid-water interface destabilization

M. Nishizawa, K. Nishizawa, 2010 .

Sequence-nonspecific Stabilization of Transmembrane Helical Peptide Dimer in Lipid Raft-like Bilayers in Atomistic Simulations. I. Dimerization Free Energy and Impact of Lipid-peptide Potential Energy

M. Nishizawa, K. Nishizawa, 2018, Annals of Biomedical Research.

Molecular dynamics simulation analysis of membrane defects and pore propensity of hemifusion diaphragms.

M. Nishizawa, K. Nishizawa, 2013, Biophysical journal.

Molecular dynamics simulations of a stretch-activated channel inhibitor GsMTx4 with lipid membranes: two binding modes and effects of lipid structure.

M. Nishizawa, K. Nishizawa, 2007, Biophysical journal.

A DNA Sequence Evolution Analysis Generalized by Simulation and the Markov Chain Monte Carlo Method Implicates Strand Slippage in a Majority of Insertions and Deletions

M. Nishizawa, K. Nishizawa, 2002, Journal of Molecular Evolution.

Sequence-nonspecific Stabilization of Transmembrane Helical Peptide Dimer in Lipid Raft-like Bilayers in Atomistic Simulations. II. Acyl Chain OrderAssociated Changes in Lipid-peptide Contacts Concordant with Potential Energy Profiles

M. Nishizawa, K. Nishizawa, 2018, Annals of Biomedical Research.

Interaction between K+ channel gate modifier hanatoxin and lipid bilayer membranes analyzed by molecular dynamics simulation

M. Nishizawa, K. Nishizawa, 2006, European Biophysics Journal.

Coupling of S4 helix translocation and S6 gating analyzed by molecular-dynamics simulations of mutated Kv channels.

M. Nishizawa, K. Nishizawa, 2009, Biophysical journal.

Extracellular Heat Shock Proteins as a Natural Protector of Cells and Organisms: A Review of Recent Studies

M. Nishizawa, Nishizawa, Kazuhisa Nishizawa, 2018, Annals of Biomedical Research.

The hydrophobic nature of a novel membrane interface regulates the enzyme 1 activity of a voltage-sensing phosphatase 2 3

Kazuhisa, Y. Okamura, A. Nakagawa, 2022 .