J. Win

发表

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

Jonathan D. G. Jones, Alexandra M. E. Jones, Audrey M. V. Ah-Fong, 2009, Nature.

Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus

Ying Li, Qian Zhou, Ton Bisseling, 2014, PLoS genetics.

Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans

S. Raffaele, S. Kamoun, L. Cano, 2010, BMC Genomics.

Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome

Marco Thines, Laura Baxter, Marcus C Chibucos, 2010, Science.

Using Hierarchical Clustering of Secreted Protein Families to Classify and Rank Candidate Effectors of Rust Fungi

S. Raffaele, S. Kamoun, L. Cano, 2012, PloS one.

Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

Laura Baxter, Konstantinos Krampis, W. Hayes McDonald, 2006, Science.

The Malarial Host-Targeting Signal Is Conserved in the Irish Potato Famine Pathogen

Konstantinos Liolios, Kasturi Haldar, Joe Win, 2006, PLoS pathogens.

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

Bernard Henrissat, Marco Thines, Mark Yandell, 2010, Genome Biology.

Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici.

James R. Knight, Neil A. Miller, B. Haas, 2012, Molecular plant-microbe interactions : MPMI.

The genome sequence and effector complement of the flax rust pathogen Melampsora lini

David A. Jones, Claire Anderson, Narayana M. Upadhyaya, 2014, Front. Plant Sci..

Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae

N. Talbot, B. McDonald, P. Ceresini, 2016, BMC Biology.

A New Resistance Gene in Combination with Rmg8 Confers Strong Resistance Against Triticum Isolates of Pyricularia oryzae in a Common Wheat Landrace.

J. Win, Y. Tosa, I. Chuma, 2018, Phytopathology.

Large-Scale Gene Disruption in Magnaporthe oryzae Identifies MC69, a Secreted Protein Required for Infection by Monocot and Dicot Fungal Pathogens

H. Matsumura, R. Terauchi, Y. Takano, 2012, PLoS pathogens.

A Functional Genomics Approach Identifies Candidate Effectors from the Aphid Species Myzus persicae (Green Peach Aphid)

M. Maffei, J. Bos, J. Win, 2010, PLoS genetics.

Oomycete genomics: new insights and future directions.

S. Kamoun, K. Lamour, J. Win, 2007, FEMS microbiology letters.

From pathogen genomes to host plant processes: the power of plant parasitic oomycetes

Graham J. Etherington, M. Banfield, Kentaroh Yoshida, 2013, Genome Biology.

Phytophthora infestans RXLR Effector PexRD2 Interacts with Host MAPKKKε to Suppress Plant Immune Signaling[W][OPEN]

M. Banfield, P. Boevink, S. Kamoun, 2014, Plant Cell.

Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches

C. Buell, J. Leach, C. Lévesque, 2008, BMC Genomics.

Extracellular proteolytic cascade in tomato activates immune protease Rcr3

S. Kamoun, J. Win, S. Dong, 2020, Proceedings of the National Academy of Sciences.

A fungal substrate mimicking molecule suppresses plant immunity via an inter-kingdom conserved motif

Pitter F. Huesgen, J. Win, G. Doehlemann, 2019, Nature Communications.

Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida

B. Henrissat, Yasuhiro Tanizawa, T. Mochizuki, 2022, Science advances.

Linking sequence to phenotype in Phytophthora-plant interactions.

E. Huitema, S. Kamoun, J. Bos, 2004, Trends in microbiology.

Genomic surveillance uncovers a pandemic clonal lineage of the wheat blast fungus

Lauren S. Ryder, H. Burbano, N. Talbot, 2022, bioRxiv.

Candidate effector gene identification in the ascomycete fungal phytopathogen Venturia inaequalis by expressed sequence tag analysis.

W. Cui, K. Plummer, J. Win, 2009, Molecular plant pathology.

Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process

Alexandra M. E. Jones, Yasin F. Dagdas, S. Schornack, 2020, bioRxiv.

Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes.

S. Raffaele, S. Kamoun, J. Win, 2014, Methods in molecular biology.

Host Protein BSL1 Associates with Phytophthora infestans RXLR Effector AVR2 and the Solanum demissum Immune Receptor R2 to Mediate Disease Resistance[C][W]

S. Schornack, S. Kamoun, T. Bozkurt, 2012, Plant Cell.

Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors

James K. Hane, Karam B. Singh, Kentaroh Yoshida, 2017, Scientific Reports.

Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

R. Terauchi, Michie Kobayashi, S. Kamoun, 2017, BMC Genomics.

Recent developments in effector biology of filamentous plant pathogens

S. Schornack, M. Banfield, S. Raffaele, 2010, Cellular microbiology.

The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana.

T. Kanneganti, E. Huitema, S. Kamoun, 2006, The Plant journal : for cell and molecular biology.

Tangled gene-for-gene interactions mediate co-evolution of the rice NLR immune 1 receptor Pik and blast fungus effector proteins 2 3 4

R. Terauchi, M. Banfield, Michie Kobayashi, 2022 .

Nanopore sequencing of genomic DNA from Magnaporthe oryzae isolates from different hosts

S. Kamoun, J. Win, Emilie Chanclud, 2019 .

Structure and Function of RXLR Effectors of Plant Pathogenic Oomycetes

S. Kamoun, J. Bos, W. Morgan, 2008 .

Genome Sequences of Plant-Associated Rhodococcus sp. Isolates from Tunisia

A. Rhouma, S. Kamoun, J. Win, 2020, Microbiology Resource Announcements.

Wild grass isolates of Magnaporthe (Syn. Pyricularia) spp. from Germany can cause blast disease on cereal crops

H. Burbano, S. Kamoun, J. Win, 2022, bioRxiv.

An effector of the Irish potato famine pathogen antagonizes a host autophagy cargo receptor

Yasin F. Dagdas, M. Banfield, J. Skłenar, 2016, eLife.

Cautionary Notes on Use of the MoT3 Diagnostic Assay for Magnaporthe oryzae Wheat and Rice Blast Isolates.

Lauren S. Ryder, N. Talbot, D. Croll, 2019, Phytopathology.

Rust fungal effectors mimic host transit peptides to translocate into chloroplasts

S. Duplessis, J. Skłenar, S. Kamoun, 2015, bioRxiv.

Characterisation of a protein from Venturia inaequalis that induces necrosis in Malus carrying the Vm resistance gene

K. Plummer, J. Win, D. Greenwood, 2003 .

Disentangling the complex gene interaction networks between rice and the blast fungus identifies a new pathogen effector

R. Terauchi, M. Banfield, Michie Kobayashi, 2022, bioRxiv.

Recent developments in effector biology of filamentous plant pathogens

S. Schornack, M. Banfield, S. Raffaele, 2010, Cellular microbiology.

SNP calling parameters have minimal impact on population structure and divergence time estimates for the rice blast fungus

H. Burbano, S. Kamoun, J. Win, 2022, bioRxiv.

A Phytophthora infestans Cystatin-Like Protein Targets a Novel Tomato Papain-Like Apoplastic Protease1[W][OA]

S. Kamoun, Jing Song, J. Win, 2006, Plant Physiology.

Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans.

F. Wright, S. Whisson, T. Torto-Alalibo, 2005, Molecular biology and evolution.

Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

G. Van den Ackerveken, S. Schornack, F. Govers, 2015, BMC Genomics.

Plant probiotic bacteria suppress wheat blast fungus Magnaporthe oryzae Triticum pathotype

S. Kamoun, J. Win, D. R. Gupta, 2017 .

Ten things to know about oomycete effectors.

B. Haas, C. Nusbaum, M. Zody, 2009, Molecular plant pathology.

Apoplastic effectors secreted by two unrelated eukaryotic plant pathogens target the tomato defense protease Rcr3

S. Schornack, M. Ilyas, S. Kamoun, 2009, Proceedings of the National Academy of Sciences.

- 1-pCB 301-p 19 : A Binary Plasmid Vector to Enhance Transient Expression of Transgenes by Agroinfiltration

S. Kamoun, J. Win, 2004 .

Association Genetics Reveals Three Novel Avirulence Genes from the Rice Blast Fungal Pathogen Magnaporthe oryzae[W][OA]

H. Matsumura, R. Terauchi, Y. Takano, 2009, The Plant Cell Online.

Regulation of Transcription of Nucleotide-Binding Leucine-Rich Repeat-Encoding Genes SNC1 and RPP4 via H3K4 Trimethylation1[C][W][OA]

Jonathan D. G. Jones, She Chen, Xin Li, 2013, Plant Physiology.

Differential loss of effector genes in three recently expanded pandemic clonal lineages of the rice blast fungus

H. Burbano, S. Kamoun, J. Win, 2020, BMC Biology.

Recently expanded clonal lineages of the rice blast fungus display distinct patterns of presence/absence of effector genes

H. Burbano, S. Kamoun, J. Win, 2020, bioRxiv.

Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes

S. Kamoun, J. Win, 2008, The Plant cell.

Adaptive Evolution Has Targeted the C-Terminal Domain of the RXLR Effectors of Plant Pathogenic Oomycetes[W]

S. Kamoun, L. Cano, J. Bos, 2007, The Plant Cell Online.

Structure of the glucanase inhibitor protein (GIP) family from phytophthora species suggests coevolution with plant endo-beta-1,3-glucanases.

D. Ripoll, S. Kamoun, J. Win, 2008, Molecular plant-microbe interactions : MPMI.

Rapid generation of a transgene-free powdery mildew resistant tomato by genome deletion

Congmao Wang, D. Weigel, C. Lanz, 2017, Scientific Reports.

Sequence Divergent RXLR Effectors Share a Structural Fold Conserved across Plant Pathogenic Oomycete Species

K. Shirasu, M. Banfield, S. Kamoun, 2012, PLoS pathogens.

Phytophthora infestans effector AVRblb2 prevents secretion of a plant immune protease at the haustorial interface

Alexandra M. E. Jones, S. Schornack, T. Shindo, 2011, Proceedings of the National Academy of Sciences.

An N-terminal motif in NLR immune receptors is functionally conserved across distantly related plant species

S. Kamoun, T. Bozkurt, J. Win, 2019, bioRxiv.

Computational and comparative analyses of 150 full-length cDNA sequences from the oomycete plant pathogen Phytophthora infestans.

T. Kanneganti, T. Torto-Alalibo, S. Kamoun, 2006, Fungal genetics and biology : FG & B.

Crowdsourced analysis of ash and ash dieback through the Open Ash Dieback project: A year 1 report on datasets and analyses contributed by a self-organising community

Bernardo J. Clavijo, Graham J. Etherington, Lisa C. Crossman, 2014, bioRxiv.

Genome evolution of a non-parasitic secondary heterotroph, the diatom Nitzschia putrida

B. Henrissat, Yasukazu Nakamura, Yasuhiro Tanizawa, 2021, bioRxiv.

Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus

H. Burbano, R. Shrestha, S. Kamoun, 2021, PLoS genetics.

A clone resource of Magnaporthe oryzae effectors that share sequence and structural similarities across host-specific lineages.

S. Kamoun, J. Win, Y. Petit-Houdenot, 2020, Molecular plant-microbe interactions : MPMI.

Genomic rearrangements generate hypervariable mini-chromosomes in host-specific lineages of the blast fungus

R. Shrestha, S. Kamoun, J. Win, 2020, bioRxiv.

An Effector-Targeted Protease Contributes to Defense against Phytophthora infestans and Is under Diversifying Selection in Natural Hosts1[W]

S. Schornack, T. Shindo, M. Ilyas, 2010, Plant Physiology.

Functional analysis of RXLR effectors from the New Zealand kauri dieback pathogen Phytophthora agathidicida

N. Williams, Bo Yang, D. Studholme, 2020, Molecular plant pathology.

Phytophthora functional genomics database (PFGD): functional genomics of phytophthora–plant interactions

Andrew D. Farmer, Mark E. Waugh, Michael D. Gonzales, 2005, Nucleic Acids Res..

454 Genome sequencing of Pseudoperonospora cubensis reveals effector proteins with a QXLR translocation motif.

Elizabeth A. Savory, F. Brandizzi, J. Win, 2011, Molecular plant-microbe interactions : MPMI.

A functional genetic assay for nuclear trafficking in plants.

Xiaodong Bai, T. Kanneganti, T. Meulia, 2007, The Plant journal : for cell and molecular biology.

Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies

S. Duplessis, J. Skłenar, S. Kamoun, 2016, PloS one.

Candidate Effector Proteins of the Rust Pathogen Melampsora larici-populina Target Diverse Plant Cell Compartments.

S. Duplessis, J. Skłenar, S. Kamoun, 2015, Molecular plant-microbe interactions : MPMI.

Antagonistic Regulation of Growth and Immunity by the Arabidopsis Basic Helix-Loop-Helix Transcription Factor HOMOLOG OF BRASSINOSTEROID ENHANCED EXPRESSION2 INTERACTING WITH INCREASED LEAF INCLINATION1 BINDING bHLH11[W][OPEN]

C. Zipfel, B. Schwessinger, J. Win, 2014, Plant Physiology.

A fungal substrate mimicking molecule suppresses plant immunity via an inter-kingdom conserved motif

Pitter F. Huesgen, J. Win, G. Doehlemann, 2019, Nature Communications.

In Planta Expression Screens of Phytophthora infestans RXLR Effectors Reveal Diverse Phenotypes, Including Activation of the Solanum bulbocastanum Disease Resistance Protein Rpi-blb2[W]

D. Choi, S. Kamoun, L. Cano, 2009, The Plant Cell Online.

Effector biology of plant-associated organisms: concepts and perspectives.

C. Zipfel, S. Schornack, S. Robatzek, 2012, Cold Spring Harbor symposia on quantitative biology.

Cleavage of a pathogen apoplastic protein by plant subtilases activates immunity

S. Kamoun, J. Win, D. Saunders, 2019, bioRxiv.

Effector Specialization in a Lineage of the Irish Potato Famine Pathogen

Alexandra M. E. Jones, M. Banfield, Kentaroh Yoshida, 2014, Science.

A Recent Expansion of the RXLR Effector Gene Avrblb2 Is Maintained in Global Populations of Phytophthora infestans Indicating Different Contributions to Virulence.

S. Raffaele, S. Kamoun, L. Cano, 2015, Molecular plant-microbe interactions : MPMI.

Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae

N. Talbot, B. McDonald, D. Croll, 2016, bioRxiv.

Purification of effector-target protein complexes via transient expression in Nicotiana benthamiana.

Alexandra M. E. Jones, S. Kamoun, J. Win, 2011, Methods in molecular biology.

A single amino acid polymorphism in a conserved effector of the multihost blast fungus pathogen expands host-target binding spectrum

R. Terauchi, M. Banfield, S. Kamoun, 2021, bioRxiv.

Structures of Phytophthora RXLR Effector Proteins

M. Banfield, S. Kamoun, J. Win, 2011, The Journal of Biological Chemistry.

Cleavage of a pathogen apoplastic protein by plant subtilases activates host immunity.

J. Win, D. Saunders, S. Dong, 2020, The New phytologist.

In planta expression screens of candidate effector proteins from the wheat yellow rust fungus reveal processing bodies as a pathogen-targeted plant cell compartment

S. Duplessis, S. Kamoun, J. Win, 2015, bioRxiv.

Searching for Effectors of Magnaporthe oryzae : A Multi-Faceted Genomics Approach

H. Matsumura, R. Terauchi, Y. Takano, 2009 .

Divergent Evolution of PcF/SCR74 Effectors in Oomycetes Is Associated with Distinct Recognition Patterns in Solanaceous Plants

R. Visser, S. Kamoun, J. Win, 2020, mBio.

Protein-Protein Interaction Assays with Effector-GFP Fusions in Nicotiana benthamiana.

S. Kamoun, J. Win, Frank L. H. Menke, 2017, Methods in molecular biology.

Genomic surveillance uncovers a pandemic clonal lineage of the wheat blast fungus

Lauren S. Ryder, H. Burbano, N. Talbot, 2023, PLoS biology.

Genomic analyses reveal that biocontrol of wheat blast by Bacillus spp. may be linked with production of antimicrobial compounds and induced systemic resistance in host plants

S. Kamoun, J. Win, D. R. Gupta, 2018 .

Genome sequence of the necrotrophic plant pathogen , Pythium ultimum , reveals original pathogenicity mechanisms and effector repertoire

Sucheta, D. Busam, M. Yandell, 2010 .

The Malarial Host-Targeting Signal Is Conserved in the Irish Potato Famine Pathogen

K. Haldar, K. Liolios, N. Hiller, 2006, PLoS pathogens.

Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

R. Terauchi, Michie Kobayashi, S. Kamoun, 2017, BMC Genomics.

Cell biology at the plant–microbe interface

Yasin F. Dagdas, M. Banfield, J. Skłenar, 2015 .

Multiple Horizontal Mini-chromosome Transfers Drive Genome Evolution of Clonal Blast Fungus Lineages

S. Kamoun, J. Win, A. C. Barragan, 2024, bioRxiv.

Genome dynamics in the pathogen/host arms race: Initial analysis of the Phytophthora infestans genome

R. Handsaker, M. Grabherr, C. Nusbaum, 2007 .

Zinc-finger (ZiF) fold secreted effectors form a functionally diverse family across lineages of the blast fungus Magnaporthe oryzae

M. Banfield, S. Kamoun, J. Win, 2024, PLoS pathogens.

Biological control potential of worrisome wheat blast disease by the seed endophytic bacilli

J. Win, D. R. Gupta, M. Z. Surovy, 2024, Frontiers in microbiology.

Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome

Paramvir S. Dehal, Jonathan D. G. Jones, Ryan G. Anderson, 2010, Science.