D. Archer

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Endoplasmic reticulum stress leads to the selective transcriptional downregulation of the glucoamylase gene in Aspergillus niger

Merja Penttilä, Tiina Pakula, G. A. Lacey, 2004, Molecular microbiology.

Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger

Karin Lanthaler, Thomas Guillemette, G. Robson, 2007, BMC Genomics.

Genome sequencing and analysis of Aspergillus oryzae

K. Isono, O. Gotoh, S. Kuhara, 2005, Nature.

Microwave radiation can alter protein conformation without bulk heating

D. Archer, D. D. de Pomerai, B. Smith, 2003, FEBS letters.

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

J. A. Roubos, R. Contreras, J. Benen, 2007, Nature Biotechnology.

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

Christina A. Cuomo, B. Birren, S. Batzoglou, 2005, Nature.

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

William H. Majoros, M. J. García, B. Haas, 2005, Nature.

The microbiological basis of process control in methanogenic fermentation of soluble wastes

D. Archer, 1983 .

Solution structure of the granular starch binding domain of glucoamylase from Aspergillus niger by nuclear magnetic resonance spectroscopy.

G Williamson, K. Sorimachi, M. Williamson, 1996, Journal of molecular biology.

Mating Type and the Genetic Basis of Self-Fertility in the Model Fungus Aspergillus nidulans

P. Dyer, M. Alcocer, D. Archer, 2007, Current Biology.

Expression in Aspergillus niger of the starch-binding domain of glucoamylase. Comparison with the proteolytically produced starch-binding domain.

K. Sorimachi, M. Williamson, G. Williamson, 1995, European journal of biochemistry.

Structural determinants of protein dynamics: analysis of 15N NMR relaxation measurements for main-chain and side-chain nuclei of hen egg white lysozyme.

C. Dobson, M. Buck, D. Mackenzie, 1995, Biochemistry.

Investigating the physiological response of Pichia (Komagataella) pastoris GS115 to the heterologous expression of misfolded proteins using chemostat cultures

S. Oliver, J. Castrillo, D. Archer, 2013, Applied Microbiology and Biotechnology.

Process development for the continuous production of heterologous proteins by the industrial yeast, Komagataella phaffii

S. Oliver, Ayca Cankorur-Cetinkaya, N. Slater, 2018, Biotechnology and bioengineering.

Protein secretion by fungi

J. Peberdy, D. Archer, G. Wallis, 2001 .

Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

B. Simmons, Mikko Arvas, E. Lindquist, 2020, Biotechnology for Biofuels.

Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

B. Simmons, Mikko Arvas, E. Lindquist, 2019, bioRxiv.

Application of carbohydrate arrays coupled with mass spectrometry to detect activity of plant-polysaccharide degradative enzymes from the fungus Aspergillus niger

D. Archer, S. Flitsch, C. Gray, 2017, Scientific Reports.

Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

B. Simmons, E. Lindquist, K. Barry, 2017, Biotechnology for Biofuels.

Effect of pH on hen egg white lysozyme production and evolution of a recombinant strain of Aspergillus niger.

G. Robson, M. Wiebe, M. Goldrick, 1999, Journal of biotechnology.

Heterologous protein production by filamentous fungi.

I. Roberts, D. Mackenzie, D. Jeenes, 1991, Biotechnology & genetic engineering reviews.

Transcriptional and post-transcriptional events affect the production of secreted hen egg white lysozyme byAspergillus niger

D. Mackenzie, D. Jeenes, D. Archer, 1994, Transgenic Research.

Water activity, solute and temperature modify growth and spore production of wild type and genetically engineered Aspergillus niger strains

N. Magan, D. Archer, R. Parra, 2004 .

Strategies for improving heterologous protein production from filamentous fungi

D. Mackenzie, D. Jeenes, D. Archer, 2004, Antonie van Leeuwenhoek.

The Potential Allergenicity of Two 2S Albumins from Soybean (Glycine max): A Protein Microarray Approach

P. Shewry, B. Niggemann, Jing Lin, 2006, International Archives of Allergy and Immunology.

The Biology of Mycoplasmas

D. Archer, M. Daniels, 1982 .

Gelation of sugarbeet and citrus pectins using enzymes extracted from orange peel

G. Williamson, C. Faulds, D. Archer, 1990 .

Yeast identification: reassessment of assimilation tests as sole universal identifiers

D. Archer, M. Stratford, S. Rawling, 2011, Letters in applied microbiology.

The molecular biology of secreted enzyme production by fungi.

J. Peberdy, D. Archer, D B Archer, 1997, Critical reviews in biotechnology.

Isolation and characterisation of a calnexin homologue, clxA, from Aspergillus niger

M. Ward, J. Peberdy, D. Jeenes, 2003, Molecular Genetics and Genomics.

Decarboxylation of Sorbic Acid by Spoilage Yeasts Is Associated with the PAD1 Gene

A. Plumridge, D. Archer, M. Stratford, 2007, Applied and Environmental Microbiology.

Hen Egg White Lysozyme Expressed in, and Secreted from, Aspergillus niger is Correctly Processed and Folded

C. Dobson, S. Radford, D. Mackenzie, 1990, Bio/Technology.

Determinants of the fidelity of processing glucoamylase-lysozyme fusions by Aspergillus niger.

D. Haynie, D. Mackenzie, D. Jeenes, 1998, European journal of biochemistry.

Detection and Quantitation of Methanogens by Enzyme-Linked Immunosorbent Assay

D. Archer, 1984, Applied and environmental microbiology.

Transcript‐specific translational regulation in the unfolded protein response of Saccharomyces cerevisiae

S. Avery, D. Archer, A. Michael, 2008, FEBS letters.

Dependence of the specific growth rate of methanogenic mutualistic cocultures on the methanogen

D. Archer, G. E. Powell, 1985, Archives of Microbiology.

Formate utilization by members of the genus Methanobacterium

D. Archer, D. Lloyd, J. Benstead, 1991, Archives of Microbiology.

Genetic Approaches with Methanogens Important in Mesophilic Anaerobic Digestion

M. Knox, D. Archer, D. Evans, 1987 .

Isolation of Gas Vesicles from Methanosarcina barken

D. Archer, N. R. King, 1984 .

A novel ultrastructural feature of a gas-vacuolated Methanosarcina

D. Archer, N. R. King, 1983 .

Enzyme-Linked Immunosorbent Assays for the Specific and Sensitive Quantification of Methanosarcina mazei and Methanobacterium bryantii

M. Morgan, D. Archer, H. A. Kemp, 1988, Applied and Environmental Microbiology.

Function of conserved tryptophans in the Aspergillus niger glucoamylase 1 starch binding domain.

K. Sorimachi, M. Williamson, G. Williamson, 1997, Biochemistry.

Uncovering the Genome-Wide Transcriptional Responses of the Filamentous Fungus Aspergillus niger to Lignocellulose Using RNA Sequencing

S. Liddell, M. Blythe, R. Ibbett, 2012, PLoS genetics.

SOD1-targeted gene disruption in the ericoid mycorrhizal fungus Oidiodendron maius reduces conidiation and the capacity for mycorrhization.

D. Archer, H. Khouja, E. Martino, 2009, Molecular plant-microbe interactions : MPMI.

The activity of barley alpha-amylase on starch granules is enhanced by fusion of a starch binding domain from Aspergillus niger glucoamylase.

N. Juge, V. Planchot, B. Svensson, 2006, Biochimica et biophysica acta.

Evidence of RIP (repeat-induced point mutation) in transposase sequences of Aspergillus oryzae.

D. Archer, M. Montiel, Heather A. Lee, 2006, Fungal genetics and biology : FG & B.

Efficient production from Aspergillus niger of a heterologous protein and an individual protein domain, heavy isotope-labelled, for structure-function analysis.

D. Mackenzie, D. Archer, M. L. Le Gal-Coëffet, 1996, Journal of biotechnology.

Use of a histone H4 promoter to drive the expression of homologous and heterologous proteins by Penicillium funiculosum

M. Alcocer, D. Archer, N. Belshaw, 2002, Applied Microbiology and Biotechnology.

Physiological optimization of secreted protein production by Aspergillus niger.

D. Mackenzie, D. Jeenes, D. Archer, 1994, Enzyme and microbial technology.

Novodvorska, Michaela and Stratford, Malcolm and Blythe, Martin J. and Wilson, Raymond and Beniston, Richard G. and Archer, David B. (2016) Metabolic activity in dormant conidia ofAspergillus nigerand developmental changes during conidial outgrowth. Fungal Genetics and Biology . ISSN 1087-1845

M. Blythe, D. Archer, M. Stratford, 2017 .

Corrigendum: Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

William H. Majoros, M. J. García, B. Haas, 2006, Nature.

Isolation and characterization of mutants of Aspergillus niger deficient in extracellular proteases

I. Roberts, D. Archer, C. A. Hondel, 1992, Molecular and General Genetics MGG.

Extreme Osmotolerance and Halotolerance in Food-Relevant Yeasts and the Role of Glycerol-Dependent Cell Individuality

S. Avery, D. Archer, M. Stratford, 2019, Front. Microbiol..

The role of CRE1 in nucleosome positioning within the cbh1 promoter and coding regions of Trichoderma reesei

M. Penttilä, M. Alapuranen, L. Ries, 2013, Applied Microbiology and Biotechnology.

Isolation and Use of a Homologous Histone H4 Promoter and a Ribosomal DNA Region in a Transformation Vector for the Oil-Producing Fungus Mortierella alpina

A. T. Carter, D. Mackenzie, D. Archer, 2000, Applied and Environmental Microbiology.

A Fibril Protein Antigen Specific to Spiroplasma

D. Archer, R. Townsend, 1983 .

Cloning of specific cDNA species using agarose gel electrophoretic size fractionation and lone linker ligation-mediated polymerase chain reaction.

R. Elliott, D. Archer, S. Southon, 1998, Analytical biochemistry.

Structural Features of Sugars That Trigger or Support Conidial Germination in the Filamentous Fungus Aspergillus niger

D. Archer, M. Stratford, Kimran Hayer, 2013, Applied and Environmental Microbiology.

Increased Cellular Carotenoid Levels Reduce the Persistence of DNA Single-Strand Breaks After Oxidative Challenge

S. Astley, R. Elliott, D. Archer, 2002, Nutrition and cancer.

Measurement of cellular repair activities for oxidative DNA damage.

S. Astley, R. Elliott, D. Archer, 2000, Free radical biology & medicine.

3.2 – The Development of DNA Repair Assays Which Show That Dietary Carrots Stimulate DNA Repair Activity

S. Astley, R. Elliott, D. Archer, 2000 .

Immunoprecipitation of Triton X-100-solubilized Mycoplasma mycoides proteins.

D. Archer, 1979, Journal of general microbiology.

A study of D52S hen lysozyme‐G1cNAc oligosaccharide complexes by NMR spectroscopy and electrospray mass spectrometry

C. Dobson, S. Radford, K. Lumb, 1992, FEBS letters.

Germination of Aspergillus niger Conidia Is Triggered by Nitrogen Compounds Related to l-Amino Acids

D. Archer, M. Stratford, Kimran Hayer, 2014, Applied and Environmental Microbiology.

Presence and Functionality of Mating Type Genes in the Supposedly Asexual Filamentous Fungus Aspergillus oryzae

K. Kitamoto, P. Dyer, D. Archer, 2012, Applied and Environmental Microbiology.

Modification of the membrane composition of Mycoplasma mycoides subsp. capri by the growth medium.

D. Archer, 1975, Journal of general microbiology.

Genomics reveals sexual secrets of Aspergillus.

P. Dyer, D. Archer, M. Paoletti, 2003, Microbiology.

Development of an Unmarked Gene Deletion System for the Filamentous Fungi Aspergillus niger and Talaromyces versatilis

J. Parrou, D. Archer, Stéphane Delmas, 2014, Applied and Environmental Microbiology.

The roles of the zinc finger transcription factors XlnR, ClrA and ClrB in the breakdown of lignocellulose by Aspergillus niger

D. Archer, Matthew Kokolski, Roxane Raulo, 2016, AMB Express.

siRNA as a molecular tool for use in Aspergillus niger

M. Alcocer, D. Archer, S. Barnes, 2008, Biotechnology Letters.

Immunoelectrophoretic Separation of Spiroplasma Antigens

D. Archer, R. Townsend, 1981 .

Purification and preliminary characterization of Spiroplasma fibrils

D. Archer, R. Townsend, K. Plaskitt, 1980, Journal of bacteriology.

A solid state fungal fermentation-based strategy for the hydrolysis of wheat straw

C. Du, D. Archer, Meng-Gui Jin, 2013, Bioresource technology.

Alcohol oxidase is a novel pathogenicity factor for Cladosporium fulvum, but aldehyde dehydrogenase is dispensable.

R. Oliver, D. Archer, N. Bradshaw, 2001, Molecular plant-microbe interactions : MPMI.

Prevention of Yeast Spoilage in Feed and Food by the Yeast Mycocin HMK

C. Shearman, M. Gasson, R. Merry, 2000, Applied and Environmental Microbiology.

Investigating the physiological response of Pichia (Komagataella) pastoris GS115 to the heterologous expression of misfolded proteins using chemostat cultures

S. Oliver, J. Castrillo, D. Archer, 2013, Applied Microbiology and Biotechnology.

niger and Talaromyces versatilis 2

J. Parrou, D. Archer, Stéphane Delmas, 2014 .

Transcriptional regulation and responses in filamentous fungi exposed to lignocellulose

D. Archer, P. Daly, Roxane Raulo, 2016 .

Filamentous fungi for production of food additives and processing aids.

I. Connerton, D. Mackenzie, D. Archer, 2008, Advances in biochemical engineering/biotechnology.

Filamentous Fungi as Expression Systems for Heterologous Proteins

D. Mackenzie, D. Jeenes, D. Archer, 2004 .

The Weak Acid Preservative Sorbic Acid Inhibits Conidial Germination and Mycelial Growth of Aspergillus niger through Intracellular Acidification

K. Lowe, A. Plumridge, A. Watson, 2004, Applied and Environmental Microbiology.

Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger

M. Blythe, L. Ries, D. Archer, 2013, BMC Genomics.

Solution structure of the granular starch binding domain of Aspergillus niger glucoamylase bound to beta-cyclodextrin.

G Williamson, K. Sorimachi, M. Williamson, 1997, Structure.

Heterologous protein secretion from Aspergillus niger in phosphate-buffered batch culture

D. Mackenzie, D. Archer, I. Roberts, 1990, Applied Microbiology and Biotechnology.

Heterologous protein production by filamentous fungi.

I. Roberts, D. Mackenzie, D. Jeenes, 1991, Biotechnology & genetic engineering reviews.

The Preservative Sorbic Acid Targets Respiration, Explaining the Resistance of Fermentative Spoilage Yeast Species

S. Avery, D. Archer, M. Stratford, 2020, mSphere.

Extreme resistance to weak-acid preservatives in the spoilage yeast Zygosaccharomyces bailii

D. Archer, G. Nebe-von-Caron, M. Stratford, 2013, International journal of food microbiology.

A preliminary analysis of the process of protein secretion and the diversity of putative secreted hydrolases encoded in Aspergillus fumigatus: insights from the genome.

J. Wortman, G. Robson, D. Archer, 2005, Medical mycology.

Heterologous expression and structural characterization of two low pH laccases from a biopulping white-rot fungus Physisporinus rivulosus

D. Archer, T. Lundell, K. Hildén, 2013, Applied Microbiology and Biotechnology.

Regulation of secreted protein production by filamentous fungi: recent developments and perspectives.

D. Mackenzie, D. Jeenes, D. Archer, 1993, Journal of general microbiology.

The expression and processing of two recombinant 2S albumins from soybean (Glycine max) in the yeast Pichia pastoris.

P. Shewry, Jing Lin, M. Alcocer, 2004, Biochimica et biophysica acta.

The decarboxylation of the weak-acid preservative, sorbic acid, is encoded by linked genes in Aspergillus spp.

J. A. Roubos, H. Menke, A. Plumridge, 2010, Fungal genetics and biology : FG & B.

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

G. Sherlock, J. Visser, F. Squina, 2017, Genome Biology.

Isolation and Characterization of Methanogenic Bacteria from Landfills

A. Macario, D. Archer, E. C. de Macario, 1988, Applied and environmental microbiology.

Genetic differentiation of the Aspergillus section Flavi complex using AFLP fingerprints.

L. J. Fuller, S. James, I. Roberts, 2003, Mycological research.

Heterologous protein secretion by Aspergillus niger growing in submerged culture as dispersed or aggregated mycelia

D. Mackenzie, D. Archer, M. Ridout, 1995, Applied Microbiology and Biotechnology.

Effect of the lipid composition of Mycoplasma mycoides subspecies capri and phosphatidylcholine vesicles upon the action of polyene antibiotics.

D. Archer, 1976, Biochimica et biophysica acta.

Antagonism by sterols of the action of amphotericin and filipin on the release of potassium ions from Candida albicans and Mycoplasma mycoides subsp. capri.

D. Archer, E. F. Gale, 1975, Journal of general microbiology.

The use of a fluorescent sterol to investigate the mode of action of amphotericin methyl ester, a polyene antibiotic.

D. Archer, D B Archer, 1975, Biochemical and biophysical research communications.

The structure and functions of the mycoplasma membrane.

D. Archer, 1981, International review of cytology.

Proteolytic degradation of heterologous proteins expressed inAspergillus niger

I. Roberts, D. Mackenzie, D. Jeenes, 1992, Biotechnology Letters.

Transcriptional and post-transcriptional events affect the production of secreted hen egg white lysozyme by Aspergillus niger.

D. Mackenzie, D. Jeenes, D. Archer, 1994, Transgenic research.

A truncated glucoamylase gene fusion for heterologous protein secretion from Aspergillus niger.

D. Mackenzie, D. Jeenes, D. Archer, 1993, FEMS microbiology letters.

A pyruvate decarboxylase gene from Aspergillus parasiticus.

V. Sanchis, I. Roberts, A. Watson, 1994, FEMS microbiology letters.

Weak-acid preservatives: pH and proton movements in the yeast Saccharomyces cerevisiae.

D. Archer, G. Nebe-von-Caron, M. Stratford, 2013, International journal of food microbiology.

Isolation and characterisation of a novel stress-inducible PDI-family gene from Aspergillus niger.

D. Jeenes, D. Archer, R. Pfaller, 1997, Gene.

Isolation and characterisation of a gene encoding protein disulphide isomerase, pdiA, from Aspergillus niger

D. Jeenes, D. Archer, C. Ngiam, 1997, Current Genetics.

Inhibition of spoilage mould conidia by acetic acid and sorbic acid involves different modes of action, requiring modification of the classical weak-acid theory.

A. Plumridge, D. Archer, G. Nebe-von-Caron, 2009, International journal of food microbiology.

The Weak-Acid Preservative Sorbic Acid Is Decarboxylated and Detoxified by a Phenylacrylic Acid Decarboxylase, PadA1, in the Spoilage Mold Aspergillus niger

K. Lowe, A. Plumridge, D. Archer, 2007, Applied and Environmental Microbiology.

The nature and location of Acholeplasma laidlawii membrane proteins investigated by two-dimensional gel electrophoresis.

D. Archer, A. Rodwell, E. S. Rodwell, 1978, Biochimica et biophysica acta.

Auxotrophy for uridine increases the sensitivity of Aspergillus niger to weak-acid preservatives.

A. Plumridge, D. Archer, M. Stratford, 2008, Microbiology.

Weak Acid Resistance A (WarA), a Novel Transcription Factor Required for Regulation of Weak-Acid Resistance and Spore-Spore Heterogeneity in Aspergillus niger

S. Avery, D. Archer, M. Bromley, 2020, mSphere.

Weak Acid Sensitive A, a novel transcription factor required for regulation of weak-acid resistance and spore-spore heterogeneity in Aspergillus niger

S. Avery, D. Archer, M. Stratford, 2019 .

Mapping the structural requirements of inducers and substrates for decarboxylation of weak acid preservatives by the food spoilage mould Aspergillus niger.

A. Plumridge, D. Archer, M. Stratford, 2012, International journal of food microbiology.

Identification and characterisation of eroA and ervA, encoding two putative thiol oxidases from Aspergillus niger.

M. Ward, D. Archer, A. Harvey, 2010, Gene.

Population heterogeneity and dynamics in starter culture and lag phase adaptation of the spoilage yeast Zygosaccharomyces bailii to weak acid preservatives

S. Avery, D. Archer, G. Nebe-von-Caron, 2014, International journal of food microbiology.

Protein-glutaminase from Chryseobacterium proteolyticum, an enzyme that deamidates glutaminyl residues in proteins. Purification, characterization and gene cloning.

D. Jeenes, D. Archer, S. Yamaguchi, 2001, European journal of biochemistry.

A modular esterase from Penicillium funiculosum which releases ferulic acid from plant cell walls and binds crystalline cellulose contains a carbohydrate binding module.

G. Williamson, P. Kroon, D. Archer, 2000, European journal of biochemistry.

Improved assay of coenzyme F 420 analogues from methanogenic bacteria

M. Peck, D. Archer, 1987 .

Glucoamylase::green fluorescent protein fusions to monitor protein secretion in Aspergillus niger.

G. Robson, A. Ram, J. Doonan, 2000, Microbiology.

Quantification of methanogenic biomass by enzyme-linked immunosorbent assay and by analysis of specific methanogenic cofactors

D. Archer, L. Gorris, H. A. Kemp, 1987 .

Methanogenic bacteria and methane production in various habitats.

D. Archer, J. E. Harris, 1986, Society for Applied Bacteriology symposium series.

Rapid method for monitoring methanogenic activities in mixed culture: Effects of inhibitory compounds

D. Archer, D. Lloyd, J. Benstead, 1993 .

Lawrence Berkeley National Laboratory Recent Work Title Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus Permalink

G. Sherlock, J. Visser, F. Squina, 2017 .

Energy production through the treatment of wastes by micro‐organisms

D. Archer, L. Thompson, 1987 .

A third fatty acid delta9-desaturase from Mortierella alpina with a different substrate specificity to ole1p and ole2p.

A. T. Carter, D. Mackenzie, D. Archer, 2002, Microbiology.

Genomics of protein folding in the endoplasmic reticulum, secretion stress and glycosylation in the aspergilli

D. Archer, S. Geysens, G. Whyteside, 2009 .

Hydrogen-using bacteria in a methanogenic acetate enrichment culture.

D. Archer, 1984, The Journal of applied bacteriology.

Impact of the unfolded protein response upon genome-wide expression patterns, and the role of Hac1 in the polarized growth, of Candida albicans.

A. Plumridge, D. Archer, T. Guillemette, 2008, Fungal genetics and biology : FG & B.

Three-dimensional architecture of the cell sheath and septa of Methanospirillum hungatei

J. Harris, D. Archer, P. Shaw, 1985, Journal of bacteriology.

Evidence that dietary supplementation with carotenoids and carotenoid-rich foods modulates the DNA damage:repair balance in human lymphocytes

S. Astley, R. Elliott, D. Archer, 2004, British Journal of Nutrition.

Calnexin Overexpression Increases Manganese Peroxidase Production in Aspergillus niger

A. Conesa, P. Punt, C. A. van den Hondel, 2002, Applied and Environmental Microbiology.

Native-State Stability Determines the Extent of Degradation Relative to Secretion of Protein Variants from Pichia pastoris

C. Dobson, M. Alcocer, D. Archer, 2011, PloS one.

Activation of the unfolded protein response in Pichia pastoris requires splicing of a HAC1 mRNA intron and retention of the C‐terminal tail of Hac1p

M. Alcocer, D. Archer, G. Whyteside, 2011, FEBS letters.

Genome-wide expression analysis upon constitutive activation of the HacA bZIP transcription factor in Aspergillus niger reveals a coordinated cellular response to counteract ER stress

A. Ram, T. Jørgensen, C. A. van den Hondel, 2012, BMC Genomics.

Methods for investigating the UPR in filamentous fungi.

A. Ram, D. Archer, T. Guillemette, 2011, Methods in enzymology.

Genomics of Protein Secretion and Hyphal Growth in Aspergillus

G. Turner, D. Archer, 2006 .

UPR-independent dithiothreitol stress-induced genes in Aspergillus niger

H. Al-Sheikh, A. Watson, D. Mackenzie, 2005, Molecular Genetics and Genomics.

Filamentous fungi as microbial cell factories for food use.

D. Archer, D B Archer, 2000, Current opinion in biotechnology.

Homologs of Aflatoxin Biosynthesis Genes and Sequence of aflR in Aspergillus oryzae andAspergillus sojae

L. J. Fuller, A. Watson, D. Jeenes, 1999, Applied and Environmental Microbiology.

Comparison of spiroplasmas by polyacrylamide gel electrophoresis of cell proteins

D. Archer, M. Daniels, R. Townsend, 1980, Current Microbiology.

Spore germination in Mortierella alpina is associated with a transient depletion of arachidonic acid and induction of fatty acid desaturase gene expression

A. T. Carter, D. Mackenzie, D. Archer, 2007, Archives of Microbiology.

Two fatty acid ∆ 9-desaturase genes , ole 1 and ole 2 , from Mortierella alpina complement the yeast ole 1 mutation

Gareth Griffiths, Louise V. Michaelson, A. T. Carter, 1999 .

Two fatty acid delta9-desaturase genes, ole1 and ole2, from Mortierella alpina complement the yeast ole1 mutation.

A. T. Carter, G. Griffiths, D. Mackenzie, 1999, Microbiology.

Modulation of Chaperone Gene Expression in Mutagenized Saccharomyces cerevisiae Strains Developed for Recombinant Human Albumin Production Results in Increased Production of Multiple Heterologous Proteins

S. Avery, D. Mead, Leslie R Evans, 2008, Applied and Environmental Microbiology.

The disulphide mapping, folding and characterisation of recombinant Ber e 1, an allergenic protein, and SFA8, two sulphur-rich 2S plant albumins.

M. J. Parker, K. Bailey, M. Alcocer, 2002, Journal of molecular biology.

Trichoderma reesei sequences that bind to the nuclear matrix enhance transformation frequency

M. Penttilä, H. Nevalainen, D. Archer, 1997, Molecular and General Genetics MGG.

Heterologous gene expression in Aspergillus niger: a glucoamylase-porcine pancreatic prophospholipase A2 fusion protein is secreted and processed to yield mature enzyme.

I. Roberts, D. Mackenzie, D. Jeenes, 1992, Gene.

Biochemical and molecular characterization of an atypical manganese peroxidase of the litter-decomposing fungus Agrocybe praecox.

D. Archer, M. Hofrichter, T. Lundell, 2014, Fungal genetics and biology : FG & B.

Characterization of a Foldase, Protein Disulfide Isomerase A, in the Protein Secretory Pathway ofAspergillus niger

P. Punt, C. A. van den Hondel, D. Jeenes, 2000, Applied and Environmental Microbiology.

A glucoamylase::GFP gene fusion to study protein secretion by individual hyphae of Aspergillus niger.

G. Robson, J. Doonan, A. Trinci, 2000, Journal of microbiological methods.

The isolation of Ant1, a transposable element from Aspergillus niger

R. Oliver, I. Roberts, D. Archer, 1995, Molecular and General Genetics MGG.

Amyloid fibril formation and seeding by wild-type human lysozyme and its disease-related mutational variants.

C. Dobson, J. Zurdo, V. Receveur, 2000, Journal of structural biology.

From genomics to post-genomics in Aspergillus.

P. Dyer, D. Archer, 2004, Current opinion in microbiology.

Production of15N-labelled hen egg white lysozyme usingAspergillus niger

C. Dobson, C. Robinson, I. Roberts, 1992, Biotechnology Letters.

Isolation and characterisation of the acetyl-CoA carboxylase gene from Aspergillus nidulans

D. Mackenzie, D. Archer, A. Parr, 1998, Current Genetics.

Rationalising lysozyme amyloidosis: insights from the structure and solution dynamics of T70N lysozyme.

Mireille Dumoulin, Christopher M Dobson, Carol V Robinson, 2005, Journal of molecular biology.

The major human structural IgE epitope of the Brazil nut allergen Ber e 1: a chimaeric and protein microarray approach.

Jing Lin, M. Alcocer, D. Archer, 2004, Journal of molecular biology.

Metabolic activity in dormant conidia of Aspergillus niger and developmental changes during conidial outgrowth

M. Blythe, R. Beniston, D. Archer, 2016, Fungal genetics and biology : FG & B.

Transcriptomic responses of mixed cultures of ascomycete fungi to lignocellulose using dual RNA-seq reveal inter-species antagonism and limited beneficial effects on CAZyme expression

M. Blythe, G. Goldman, D. Archer, 2017, Fungal genetics and biology : FG & B.

PCR fingerprinting with a consensus tRNA primer enables strain identification of Mortierella alpina

A. T. Carter, B. Pearson, D. Mackenzie, 2000 .

Mycoplasmas lack a protein which closely resembles α-actin

D. Archer, A. Rodwell, E. S. Rodwell, 1979 .

A camelid antibody fragment inhibits the formation of amyloid fibrils by human lysozyme

Christopher M. Dobson, Mireille Dumoulin, Lode Wyns, 2003, Nature.

Molecular biology of spiroplasma plasmids.

D. Archer, M. Daniels, C. Barber, 1983, The Yale journal of biology and medicine.

Local cooperativity in the unfolding of an amyloidogenic variant of human lysozyme

C. Dobson, C. Robinson, M. Sunde, 2002, Nature Structural Biology.

Isolation and Restriction Mapping of a Spiroplasma Plasmid

D. Archer, C. Barber, 1981 .

Crystal structure of the mutant D52S hen egg white lysozyme with an oligosaccharide product.

C. Dobson, S. Radford, L. Johnson, 1995, Journal of molecular biology.

D. Archer, J. Best, 1980 .

Methanogenesis from Ethanol by Defined Mixed Continuous Cultures

M. Parker, D. Archer, G. E. Powell, 1989, Applied and environmental microbiology.

Plant low-molecular-weight phospholipase A2s (PLA2s) are structurally related to the animal secretory PLA2s and are present as a family of isoforms in rice (Oryza sativa)

U. Stahl, F. Cellini, D. Mackenzie, 1999, Plant Molecular Biology.

In vitro stability and immunoreactivity of the native and recombinant plant food 2S albumins Ber e 1 and SFA‐8

M. Alcocer, D. Archer, M. Dumoulin, 2003, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.

Pathogenic mechanisms of mycoplasmas

D. Archer, 1979, Nature.

Reduced global cooperativity is a common feature underlying the amyloidogenicity of pathogenic lysozyme mutations.

Mireille Dumoulin, Lode Wyns, Christopher M Dobson, 2005, Journal of molecular biology.

Impact of the native‐state stability of human lysozyme variants on protein secretion by Pichia pastoris

C. Dobson, C. Robinson, M. Alcocer, 2006, The FEBS journal.

The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger

Paul Dupree, M. Blythe, P. Dupree, 2014, Fungal genetics and biology : FG & B.

Diversity of cellulolytic bacteria in landfill

D. R. Boone, D. Boone, D. Archer, 1995 .

Exploring fungal biodiversity: organic acid production by 66 strains of filamentous fungi

M. Blythe, R. Ibbett, G. Tucker, 2014, Fungal Biology and Biotechnology.

RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger

M. Blythe, R. Ibbett, G. Tucker, 2014, Fungal Biology and Biotechnology.

Isolation and characterisation of a gene encoding protein disulphide isomerase, pdiA, from Aspergillus niger ORIGINAL PAPER

D. Jeenes, D. Archer, C. Ngiam, 1997 .

Trancriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing

M. Blythe, D. Archer, H. Stam, 2013, BMC Genomics.

Stability of recombinant 2 S albumin allergens in vitro.

M. Alcocer, D. Archer, M. Dumoulin, 2001, Biochemical Society transactions.

HacA-Independent Induction of Chaperone-Encoding Gene bipA in Aspergillus niger Strains Overproducing Membrane Proteins

D. Mackenzie, D. Jeenes, D. Archer, 2006, Applied and Environmental Microbiology.

Chitin biosynthesis in protoplasts and subcellular fractions of Aspergillus fumigatus.

D. Archer, 1977, The Biochemical journal.

Expression, purification, and characterization of the recombinant calcium-binding equine lysozyme secreted by the filamentous fungus Aspergillus niger: comparisons with the production of hen and human lysozymes.

D. Mackenzie, D. Jeenes, D. Archer, 1999, Protein expression and purification.

Evaluating the potential of natural product combinations with sorbic acid for improving preservative action against food-spoilage yeasts

S. Avery, D. Archer, Alex C. Hendry, 2023, Fungal Biology.

Comparison of modular and non-modular xylanases as carrier proteins for the efficient secretion of heterologous proteins from Penicillium funiculosum

P. Kroon, M. Alcocer, D. Archer, 2003, Applied Microbiology and Biotechnology.

Uncoupling of Methanogenesis from Growth of Methanosarcina barkeri by Phosphate Limitation

D. Archer, 1985, Applied and environmental microbiology.

Engineering a camelid antibody fragment that binds to the active site of human lysozyme and inhibits its conversion into amyloid fibrils.

C. Dobson, L. Wyns, S. Muyldermans, 2008, Biochemistry.

GLUCOAMYLASE, GRANULAR STARCH-BINDING DOMAIN, NMR, 5 STRUCTURES

K. Sorimachi, M. Williamson, G. Williamson, 1996 .

Additional file 8: of Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

G. Sherlock, J. Visser, F. Squina, 2017 .

Detection of Spiroplasma citri in plants and insect hosts by ELISA

D. Archer, P. Markham, R. Townsend, 1982 .

Plant pathogenicity and transmission tests with Acholeplasma spp. isolated from coconut palms in Jamaica

D. Archer, P. Markham, R. Townsend, 1985 .

Further studies on a spiroplasma isolated from coconut palms in Jamaica

D. Archer, J. Tully, S. Eden-Green, 1983 .

On‐line titration method for monitoring buffer capacity and total volatile fatty acid levels in anaerobic digesters

D. Archer, D B Archer, G E Powell, 1989, Biotechnology and bioengineering.

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

G. Sherlock, F. Squina, A. Salamov, 2017, Genome Biology.

The role of CRE1 in nucleosome positioning within the cbh1 promoter and coding regions of Trichoderma reesei

M. Penttilä, M. Alapuranen, L. Ries, 2013, Applied Microbiology and Biotechnology.

Aberrant processing of wild-type and mutant bovine pancreatic trypsin inhibitor secreted by Aspergillus niger.

T. Komiyama, D. Mackenzie, D. Archer, 1998, Journal of biotechnology.

Methanogenesis in the anaerobic treatment of food-processing wastes

D. Archer, M. Hilton, B. Kirsop, 1984 .

Method for RNA extraction and transcriptomic analysis of single fungal spores

Richard D Emes, S. Avery, D. Archer, 2019, MethodsX.

1H and 15N assignments and secondary structure of the starch-binding domain of glucoamylase from Aspergillus niger.

K. Sorimachi, M. Williamson, G. Williamson, 1995, European journal of biochemistry.

Response of populations of human faecal bacteria to viscosity in vitro.

G. Wyatt, D. Archer, 1988, The Journal of applied bacteriology.

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

G. Sherlock, F. Squina, A. Salamov, 2017, Genome Biology.

Specific inhibition of sulphate‐reducing bacteria in methanogenic co‐culture

D. Archer, V. K. Yadav, 1988 .

Filamentous fungi for production of food additives and processing aids.

I. Connerton, D. Mackenzie, D. Archer, 2008, Advances in biochemical engineering/biotechnology.

SOD1-targeted gene disruption in the ericoid mycorrhizal fungus Oidiodendron maius reduces conidiation and the capacity for mycorrhization.

D. Archer, H. Khouja, E. Martino, 2009, Molecular plant-microbe interactions : MPMI.

Kinetics of the methanogenic fermentation of acetate

D. Archer, David B. Archer, M. Hilton, 2008 .

Hydrogen as a process control index in a pilot scale anaerobic digester

D. Archer, David B. Archer, M. Hilton, 1986, Biotechnology Letters.

Oxidative insult specifically decreases levels of a mitochondrial transcript.

R. Elliott, D. Archer, S. Southon, 1999, Free radical biology & medicine.

Population heterogeneity and dynamics in starter culture and lag phase adaptation of the spoilage yeast Zygosaccharomyces bailii to weak acid preservatives

S. Avery, D. Archer, G. Nebe-von-Caron, 2014, International journal of food microbiology.

Germination of Aspergillus niger Conidia Is Triggered by Nitrogen Compounds Related to l-Amino Acids

D. Archer, M. Stratford, K. Hayer, 2014, Applied and Environmental Microbiology.

Membrane Proteins of Mycoplasma gallisepticum

D. Archer, A. Rodwell, 1982, Journal of bacteriology.

Development of an Unmarked Gene Deletion System for the Filamentous Fungi Aspergillus niger and Talaromyces versatilis

J. Parrou, D. Archer, Stéphane Delmas, 2014, Applied and Environmental Microbiology.

Decarboxylation of Sorbic Acid by Spoilage Yeasts Is Associated with the PAD1 Gene

A. Plumridge, D. Archer, M. Stratford, 2007, Applied and Environmental Microbiology.