Jialiang Yang

发表

QS-Net: Reconstructing Phylogenetic Networks Based on Quartet and Sextet

Bo Liao, M. Tan, Haixia Long, 2019, Front. Genet..

Global network random walk for predicting potential human lncRNA-disease associations

Bo Liao, Keqin Li, Lijun Cai, 2017, Scientific Reports.

A Systematic Analysis on COVID-19 Patients in Inner Mongolia Based on Dynamic Monitoring

Geng Tian, Jialiang Yang, Lan Yu, 2021, BioMed research international.

A Machine Learning-based Diagnosis of Thyroid Cancer Using Thyroid Nodules Ultrasound Images

Geng Tian, Jialiang Yang, Yi Zhang, 2020, Current Bioinformatics.

Identifying Effective Antiviral Drugs Against SARS-CoV-2 by Drug Repositioning Through Virus-Drug Association Prediction

Geng Tian, Jialiang Yang, Lihong Peng, 2020, Frontiers in Genetics.

Single-cell RNA-seq clustering: datasets, models, and algorithms

Geng Tian, Jialiang Yang, Lihong Peng, 2020, RNA biology.

Probing antiviral drugs against SARS-CoV-2 through virus-drug association prediction based on the KATZ method

Geng Tian, Jialiang Yang, Lihong Peng, 2020, Genomics.

Comparison of multi-tissue aging between human and mouse

J. Zhuang, Jialiang Yang, Cheng Guo, 2019, Scientific Reports.

TOOme: A Novel Computational Framework to Infer Cancer Tissue-of-Origin by Integrating Both Gene Mutation and Expression

Geng Tian, Jialiang Yang, Qingqing Lu, 2020, Frontiers in Bioengineering and Biotechnology.

A machine learning framework to trace tumor tissue-of-origin of 13 types of cancer based on DNA somatic mutation.

Geng Tian, Jialiang Yang, Bo Wang, 2020, Biochimica et biophysica acta. Molecular basis of disease.

Indicator Regularized Non-Negative Matrix Factorization Method-Based Drug Repurposing for COVID-19

Lijun Cai, Jialiang Yang, Yajie Meng, 2021, Frontiers in Immunology.

A Neural Network Framework for Predicting the Tissue-of-Origin of 15 Common Cancer Types Based on RNA-Seq Data

Zhen Zhou, Geng Tian, Jialiang Yang, 2020, Frontiers in Bioengineering and Biotechnology.

A Review on Cancer of Unknown Primary Origin: The Role of Molecular Biomarkers in the Identification of Unknown Primary Origin.

Dawei Yuan, Geng Tian, Jialiang Yang, 2020, Methods in molecular biology.

Molecular Network-Based Drug Prediction in Thyroid Cancer

Zejun Li, Yuhua Yao, Haixia Long, 2019, International journal of molecular sciences.

Computational drug repositioning using similarity constrained weight regularization matrix factorization: A case of COVID‐19

Geng Tian, Jialiang Yang, Lihong Peng, 2022, Journal of cellular and molecular medicine.

A Systematic Framework for Identifying Prognostic Genes in the Tumor Microenvironment of Colon Cancer

Geng Tian, Jialiang Yang, Y. Lan, 2022, Frontiers in Oncology.

Protective Role of a New Polysaccharide Extracted from Lonicera japonica Thunb in Mice with Ulcerative Colitis Induced by Dextran Sulphate Sodium

Geng Tian, Jialiang Yang, Qingqing Lu, 2021, BioMed research international.

Evaluating the performance of dropout imputation and clustering methods for single-cell RNA sequencing data

Taoyang Wu, Geng Tian, J. Zhuang, 2022, Comput. Biol. Medicine.

Bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer

Jialiang Yang, Kebo Lv, Xuelian Yuan, 2022, Frontiers in Microbiology.

Analysis of CT scan images for COVID-19 pneumonia based on a deep ensemble framework with DenseNet, Swin transformer, and RegNet

Zejun Li, Geng Tian, Jialiang Yang, 2022, Frontiers in Microbiology.

ICSDA: a multi-modal deep learning model to predict breast cancer recurrence and metastasis risk by integrating pathological, clinical and gene expression data

Geng Tian, Jialiang Yang, Yuebin Liang, 2022, Briefings Bioinform..

Single-cell technologies: From research to application

Ning Zhang, W. Geng, J. Chen, 2022, Innovation (Cambridge (Mass.)).

TCM‐Suite: A comprehensive and holistic platform for Traditional Chinese Medicine component identification and network pharmacology analysis

Geng Tian, Jialiang Yang, K. Ning, 2022, iMeta.

Prioritizing antiviral drugs against SARS-CoV-2 by integrating viral complete genome sequences and drug chemical structures

Geng Tian, Jialiang Yang, Lihong Peng, 2021, Scientific Reports.

Prediction of HER2-positive breast cancer recurrence and metastasis risk from histopathological images and clinical information via multimodal deep learning

Geng Tian, Jialiang Yang, X. Yuan, 2021, Computational and structural biotechnology journal.

Identification and Validation of Efficacy of Immunological Therapy for Lung Cancer From Histopathological Images Based on Deep Learning

Bo Liao, Wen Zhu, Jialiang Yang, 2021, Frontiers in Genetics.

Community Detection and Visualization in Complex Network by the Density-Canopy-Kmeans Algorithm and MDS Embedding

Bo Wang, Jialiang Yang, Ju Xiang, 2019, IEEE Access.

Molecular Network-Based Identification of Competing Endogenous RNAs in Thyroid Carcinoma

Yuhua Yao, Jialiang Yang, Baohang Xi, 2018, Genes.

CMF-Impute: an accurate imputation tool for single-cell RNA-seq data

Wen Zhu, Bo Liao, Lijun Cai, 2020, Bioinform..

A Deep Learning Framework to Predict Tumor Tissue-of-Origin Based on Copy Number Alteration

Ying Liang, Jialiang Yang, Geng Tian, 2020, Frontiers in Bioengineering and Biotechnology.

An Improved Anticancer Drug-Response Prediction Based on an Ensemble Method Integrating Matrix Completion and Ridge Regression

Jialiang Yang, Geng Tian, Li Huang, 2020, Molecular therapy. Nucleic acids.

LRMCMDA: Predicting miRNA-Disease Association by Integrating Low-Rank Matrix Completion With miRNA and Disease Similarity Information

Jialiang Yang, Geng Tian, Ju Xiang, 2020, IEEE Access.

Identifying Small Molecule-miRNA Associations Based on Credible Negative Sample Selection and Random Walk

Jialiang Yang, Fuxing Liu, Lihong Peng, 2020, Frontiers in Bioengineering and Biotechnology.

Evaluating the Potential of T Cell Receptor Repertoires in Predicting the Prognosis of Resectable Non-Small Cell Lung Cancers

Geng Tian, Jialiang Yang, Gang Chen, 2020, Molecular therapy. Methods & clinical development.

IIRWR: Internal Inclined Random Walk With Restart for LncRNA-Disease Association Prediction

Lei Wang, Jialiang Yang, Xiang Feng, 2019, IEEE Access.

MVSC: a multi-variation simulator of cancer genome.

Ying Liang, Wen Zhu, Ning Li, 2020, Combinatorial chemistry & high throughput screening.

Global network random walk for predicting potential human lncRNA-disease associations

Bo Liao, Keqin Li, Lijun Cai, 2017, Scientific Reports.

Identifying Breast Cancer-Related Genes Based on a Novel Computational Framework Involving KEGG Pathways and PPI Network Modularity

Ju Xiang, Geng Tian, Jialiang Yang, 2021, Frontiers in Genetics.

Application of Circulating Tumor DNA as a Biomarker for Non-Small Cell Lung Cancer

Minghui Zhang, Jialiang Yang, Min Tang, 2021, Frontiers in Oncology.

Identifying Potential miRNAs–Disease Associations With Probability Matrix Factorization

Wen Zhu, Lijun Cai, Peng Wang, 2019, Front. Genet..

A weighted bilinear neural collaborative filtering approach for drug repositioning

Xiangxiang Zeng, Jialiang Yang, Yajie Meng, 2022, Briefings Bioinform..

Simultaneous detection and comprehensive analysis of HPV and microbiome status of a cervical liquid-based cytology sample using Nanopore MinION sequencing

Yu Song, Geng Tian, Jialiang Yang, 2019, Scientific Reports.

Systematic Tracing of Susceptible Animals to SARS-CoV-2 by a Bioinformatics Framework

Hailiang Sun, Geng Tian, Jialiang Yang, 2022, Frontiers in Microbiology.

Editorial: Applications of Metagenomics in Studying Human Cancer

Taoyang Wu, Lei Chen, Guohua Huang, 2021, Frontiers in Genetics.

Improved Pre-miRNAs Identification Through Mutual Information of Pre-miRNA Sequences and Structures

Yifan Chen, Lihong Peng, Wen Zhu, 2019, Front. Genet..

BPLLDA: Predicting lncRNA-Disease Associations Based on Simple Paths With Limited Lengths in a Heterogeneous Network

Lihong Peng, Yuhua Yao, Junlin Xu, 2018, Front. Genet..

Predicting colorectal cancer tumor mutational burden from histopathological images and clinical information using multi-modal deep learning

Geng Tian, Jialiang Yang, Jinyang Liu, 2022, Bioinform..

Evaluating DNA Methylation, Gene Expression, Somatic Mutation, and Their Combinations in Inferring Tumor Tissue-of-Origin

Geng Tian, Jialiang Yang, Chun Qiu, 2021, Frontiers in Cell and Developmental Biology.

A Novel XGBoost Method to Identify Cancer Tissue-of-Origin Based on Copy Number Variations

Jionglong Su, Shudong Wang, Yulin Zhang, 2020, Frontiers in Genetics.

MNNMDA: Predicting human microbe-disease association via a method to minimize matrix nuclear norm

Geng Tian, Jialiang Yang, Binsheng He, 2023, Computational and structural biotechnology journal.

DGHNE: network enhancement-based method in identifying disease-causing genes through a heterogeneous biomedical network

Ju Xiang, Geng Tian, Jialiang Yang, 2022, Briefings Bioinform..

A multi-omics machine learning framework in predicting the survival of colorectal cancer patients

Huandong Yang, Geng Tian, Jialiang Yang, 2022, Comput. Biol. Medicine.

Application of a Deep Matrix Factorization Model on Integrated Gene Expression Data

Mi-Xiao Hou, Jin-Xing Liu, Yong-Jing Hao, 2020, Current Bioinformatics.

Inferring Latent Disease-lncRNA Associations by Faster Matrix Completion on a Heterogeneous Network

Junlin Xu, Geng Tian, Guo Mao, 2019, Front. Genet..

A Bidirectional Label Propagation Based Computational Model for Potential Microbe-Disease Association Prediction

Hao Li, Yuqi Wang, Lei Wang, 2019, Front. Microbiol..

Immunomodulatory activity of a novel polysaccharide from Lonicera japonica in immunosuppressed mice induced by cyclophosphamide

Jialiang Yang, Yun Fang, X. Kan, 2018, PloS one.

Revealing Drug-Target Interactions with Computational Models and Algorithms

Min Chen, Hong Wen, Li Peng, 2019, Molecules.

Genomic variation, origin tracing, and vaccine development of SARS-CoV-2: A systematic review

Tao Huang, Geng Tian, Jialiang Yang, 2021, The Innovation.

Probing lncRNA–Protein Interactions: Data Repositories, Models, and Algorithms

Xiaojun Liu, Fuxing Liu, Geng Tian, 2020, Frontiers in Genetics.

Evaluating the Microsatellite Instability of Colorectal Cancer Based on Multimodal Deep Learning Integrating Histopathological and Molecular Data

Wenjing Qiu, Geng Tian, Jialiang Yang, 2022, Frontiers in Oncology.

IMDAILM: Inferring miRNA-Disease Association by Integrating lncRNA and miRNA Data

Jialiang Yang, Yuhua Yao, Bo Liao, 2020, IEEE Access.

Editorial: Computational Methods in Inferring Cancer Tissue-of-Origin and Cancer Molecular Classification

Jialiang Yang, Cheng Guo, Ling Kui, 2021, Frontiers in Genetics.

Application of oncolytic virus in tumor therapy

Z. Huang, Jialiang Yang, Yuanyuan Han, 2023, Journal of medical virology.

Whole-exome Sequencing of Tumor-only Samples Reveals the Association between Somatic Alterations and Clinical Features in Pancreatic Cancer

X. Xing, Dawei Yuan, Geng Tian, 2020 .

Emvirus: An embedding-based neural framework for human-virus protein-protein interactions prediction

Geng Tian, J. Zhuang, Jialiang Yang, 2023, Biosafety and Health.

T Cell Receptor Repertoire Sequencing.

Geng Tian, Jialiang Yang, Yuebin Liang, 2020, Methods in molecular biology.

Improved Human Age Prediction by Using Gene Expression Profiles From Multiple Tissues

Zhidong Tu, Luonan Chen, Geng Tian, 2020, Frontiers in Genetics.

A Machine Learning Approach for Tracing Tumor Original Sites With Gene Expression Profiles

Wen Zhu, Jialiang Yang, Bo Liao, 2020, Frontiers in Bioengineering and Biotechnology.

A new resource allocation strategy based on the relationship between subproblems for MOEA/D

Peng Wang, Haihua Liu, Jialiang Yang, 2019, Inf. Sci..

Editorial: Machine learning-based methods for RNA data analysis—Volume II

Jialiang Yang, Lihong Peng, Liqian Zhou, 2022, Frontiers in Genetics.

Predicting Influenza Antigenicity by Matrix Completion With Antigen and Antiserum Similarity

Lihong Peng, Lijun Cai, Wen Zhu, 2018, Front. Microbiol..

Help Transformer Improve Performance in Automatic Mathematics Word Problem-Solving

Jialiang Yang, Guanfang Wang, Dong Liu, 2022, IEEE Access.

Predicting influenza antigenicity from Hemagglutintin sequence data based on a joint random forest method

Pingan He, Yuhua Yao, Hailiang Sun, 2017, Scientific Reports.

Comparison of multi-tissue aging between human and mouse

J. Zhuang, Jialiang Yang, Cheng Guo, 2019, Scientific Reports.

Accurate Detection of HPV Integration Sites in Cervical Cancer Samples Using the Nanopore MinION Sequencer Without Error Correction

Geng Tian, Jia Liu, Ying Liu, 2020, Frontiers in Genetics.

Prediction of Protein Subcellular Localization Based on Fusion of Multi-view Features

Bo Li, Jialiang Yang, Pingping Bing, 2019, Molecules.

MicroEXPERT: Microbiome profiling platform with cross‐study metagenome‐wide association analysis functionality

Haixia Long, Geng Tian, Jialiang Yang, 2023, iMeta.

Prioritizing Human Microbe-Disease Associations Utilizing a Node-Information-Based Link Propagation Method

Lei Wang, Jialiang Yang, Wei Liu, 2020, IEEE Access.

NAIGO: An Improved Method to Align PPI Networks Based on Gene Ontology and Graphlets

Yi Zhang, Lijuan Zhu, Jialiang Yang, 2020, Frontiers in Bioengineering and Biotechnology.

Intratumoral Microbiota-Host Interactions Shape the Variability of Lung Adenocarcinoma and Lung Squamous Cell Carcinoma in Recurrence and Metastasis

Geng Tian, Jialiang Yang, Kebo Lv, 2023, Microbiology spectrum.

Predicting gastric cancer tumor mutational burden from histopathological images using multimodal deep learning.

W. Liu, Geng Tian, Jialiang Yang, 2023, Briefings in functional genomics.

Editorial: Machine Learning-Based Methods for RNA Data Analysis

Jialiang Yang, Lihong Peng, Liqian Zhou, 2022, Frontiers in Genetics.

Network-based collaborative filtering recommendation model for inferring novel disease-related miRNAs

Keqin Li, Jialiang Yang, Bo Liao, 2017 .

A meta-analysis of tissue microbial biomarkers for recurrence and metastasis in multiple cancer types.

Geng Tian, Jialiang Yang, K. Ning, 2023, Journal of medical microbiology.

Tumor microenvironment interplay amid microbial community, host gene expression and pathological features elucidates cancer heterogeneity and prognosis risk

Jialiang Yang, Shuxue Xi, Haohong Zhang, 2023, The Innovation Life.

Identification of Human LncRNA-Disease Association by Fast Kernel Learning-Based Kronecker Regularized Least Squares

Shulin Wang, Jialiang Yang, Wen Li, 2020, ICIC.

Improved DNA-Binding Protein Identification by Incorporating Evolutionary Information Into the Chou’s PseAAC

Lihong Peng, Jialiang Yang, Bo Liao, 2018, IEEE Access.

A Streamlined scRNA-Seq Data Analysis Framework Based on Improved Sparse Subspace Clustering

Jialiang Yang, Geng Tian, Jujuan Zhuang, 2021, IEEE Access.

MLSpatial: A machine-learning method to reconstruct the spatial distribution of cells from scRNA-seq by extracting spatial features

Geng Tian, Jialiang Yang, Mengbo Zhu, 2023, Comput. Biol. Medicine.

Assessing the Impact of Data Preprocessing on Analyzing Next Generation Sequencing Data

Weiwei Wang, Lei Song, Jialiang Yang, 2020, Frontiers in Bioengineering and Biotechnology.