J. Rathjen

发表

Plant immunity: towards an integrated view of plant–pathogen interactions

John P. Rathjen, P. Dodds, J. Rathjen, 2010, Nature Reviews Genetics.

P. Dodds, J. Rathjen, D. Garnica, 2014, PLoS pathogens.

A near complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus Puccinia striiformis f. sp. tritici reveals high inter-haplotype diversity

Marisa E. Miller, Jennifer M. Taylor, B. Schwessinger, 2017, bioRxiv.

Brassinosteroids inhibit pathogen-associated molecular pattern–triggered immune signaling independent of the receptor kinase BAK1

C. Zipfel, B. Schwessinger, J. Rathjen, 2011, Proceedings of the National Academy of Sciences.

High levels of cyclic‐di‐GMP in plant‐associated P seudomonas correlate with evasion of plant immunity

C. Zipfel, J. Rathjen, J. Malone, 2015, Molecular plant pathology.

Blurred lines: integrating emerging technologies to advance plant biosecurity.

B. Schwessinger, J. Rathjen, Yiheng Hu, 2020, Current opinion in plant biology.

Harnessing the MinION: An example of how to establish long‐read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora

David A. Eccles, R. Lanfear, David A Eccles, 2018, Molecular ecology resources.

NAD+ cleavage activity by animal and plant TIR domains in cell death pathways

Bostjan Kobe, Mark von Itzstein, Jonathan Gilley, 2019, Science.

Pseudomonas fluorescens NZI7 repels grazing by C. elegans, a natural predator

J. Hodgkin, D. Studholme, J. Rathjen, 2013, The ISME Journal.

Long-read sequencing based clinical metagenomics for the detection and confirmation of Pneumocystis jirovecii directly from clinical specimens: A paradigm shift in mycological diagnostics.

E. Stone, T. Sorrell, B. Schwessinger, 2019, Medical mycology.

A chloroplast retrograde signal, 3’-phosphoadenosine 5’-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination

Peter A. Crisp, B. Pogson, Zhonghua Chen, 2017, eLife.

The Pto Kinase of Tomato, Which Regulates Plant Immunity, Is Repressed by Its Myristoylated N Terminus*

Vasilios M E Andriotis, J. Rathjen, Vasilios M. E. Andriotis, 2006, Journal of Biological Chemistry.

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity

Marisa E. Miller, Jennifer M. Taylor, B. Schwessinger, 2018, mBio.

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust

Marisa E. Miller, Jennifer M. Taylor, C. Raley, 2018, mBio.

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust

Marisa E. Miller, Jennifer M. Taylor, C. Raley, 2017, mBio.

Changing SERKs and priorities during plant life.

B. Schwessinger, J. Rathjen, 2015, Trends in plant science.

Gibberellin biosynthesis and signalling during development of the strawberry receptacle.

A. Fernie, M. Nakajima, Sonia Osorio, 2011, The New phytologist.

A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528

Jeff H. Chang, J. Dangl, D. MacLean, 2009, BMC Genomics.

Prf immune complexes of tomato are oligomeric and contain multiple Pto-like kinases that diversify effector recognition.

Alexandra M. E. Jones, Tatiana S. Mucyn, J. Rathjen, 2010, The Plant journal : for cell and molecular biology.

avrPto enhances growth and necrosis caused by Pseudomonas syringae pv.tomato in tomato lines lacking either Pto or Prf.

R. Michelmore, J. Chang, J. Rathjen, 2000, Molecular plant-microbe interactions : MPMI.

Constitutively active Pto induces a Prf‐dependent hypersensitive response in the absence of avrPto

R. Michelmore, J. Rathjen, B. Staskawicz, 1999, The EMBO journal.

Direct recognition of pathogen effectors by plant NLR immune receptors and downstream signalling

P. Dodds, J. Rathjen, Xiaoxiao Zhang, 2022, Essays in biochemistry.

Stranded Assets as a Key Concept to Guide Investment Strategies for Sustainable Development Goal 6

M. Rivett, J. Rathjen, R. Kalin, 2019, Water.

Early signal transduction events in specific plant disease resistance.

J. Rathjen, P. Moffett, 2003, Current opinion in plant biology.

Tomato Pto encodes a functional N-myristoylation motif that is required for signal transduction in Nicotiana benthamiana.

Vasilios M E Andriotis, J. Rathjen, A. Wu, 2006, The Plant journal : for cell and molecular biology.

The Pseudomonas type III effector HopQ1 activates cytokinin signaling and interferes with plant innate immunity.

T. Boller, G. Felix, S. Schornack, 2014, The New phytologist.

The receptor-like kinase SERK3/BAK1 is a central regulator of innate immunity in plants

Alexandra M. E. Jones, J. Schroeder, Jia Li, 2007, Proceedings of the National Academy of Sciences.

High throughput virus‐induced gene silencing implicates heat shock protein 90 in plant disease resistance

D. Baulcombe, M. Ruiz, J. Rathjen, 2003, The EMBO journal.

The Bacterial Effector HopX1 Targets JAZ Transcriptional Repressors to Activate Jasmonate Signaling and Promote Infection in Arabidopsis

R. Solano, A. Chini, J. Rathjen, 2014, PLoS biology.

Recognition and Response in Plant PAMP‐Triggered Immunity

J. Rathjen, D. Godfrey, 2012 .

Efficient infection from cDNA clones of cucumber mosaic cucumovirus RNAs in a new plasmid vector.

R. Symons, S. Ding, J. Rathjen, 1995, The Journal of general virology.

Molecular Basis of Gene-for-Gene Specificity in Bacterial Speck Disease of Tomato

Jeff H. Chang, Daniel T. Lavelle, R. Michelmore, 1996, Science.

The calcium-dependent protein kinase CPK28 buffers plant immunity and regulates BIK1 turnover.

D. MacLean, C. Zipfel, T. Romeis, 2014, Cell host & microbe.

Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.

David J Studholme, Alexandra M. E. Jones, Erik Andreasson, 2009, Journal of proteomics.

The LysM receptor kinase CERK1 mediates bacterial perception in Arabidopsis

J. Rathjen, Selena Gimenez-Ibanez, Vardis Ntoukakis, 2009, Plant signaling & behavior.

Soybean dwarf luteovirus contains the third variant genome type in the luteovirus group.

P. Waterhouse, R. Symons, L. Karageorgos, 1994, Virology.

Inferring Species Compositions of Complex Fungal Communities from Long- and Short-Read Sequence Data

E. Stone, B. Schwessinger, J. Rathjen, 2021, bioRxiv.

Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides.

Huw A. Ogilvie, David A Jones, P. Solomon, 2017, Molecular plant pathology.

ASPARTATE OXIDASE Plays an Important Role in Arabidopsis Stomatal Immunity1[W][OA]

C. Zipfel, J. Rathjen, A. Macho, 2012, Plant Physiology.

NbCSPR underlies age-dependent immune responses to bacterial cold shock protein in Nicotiana benthamiana

C. Zipfel, J. Rathjen, N. Holton, 2016, Proceedings of the National Academy of Sciences.

A new method to visualize CEP peptide-CEP receptor interactions in vascular tissue in vivo.

Sacha B Pulsford, J. Rathjen, M. Djordjevic, 2021, Journal of experimental botany.

Host Inhibition of a Bacterial Virulence Effector Triggers Immunity to Infection

Alexandra M. E. Jones, Tatiana S. Mucyn, J. Rathjen, 2009, Science.

A Patch of Surface-Exposed Residues Mediates Negative Regulation of Immune Signaling by Tomato Pto Kinasew⃞

J. Rathjen, M. Durrant, A. Wu, 2004, The Plant Cell Online.

Distinct Life Histories Impact Dikaryotic Genome Evolution in the Rust Fungus Puccinia striiformis Causing Stripe Rust in Wheat

T. Sicheritz-Pontén, J. Vogt, M. McMullan, 2019, bioRxiv.

The changing of the guard: the Pto/Prf receptor complex of tomato and pathogen recognition.

J. Rathjen, Isabel M. L. Saur, Brendon F. Conlan, 2014, Current opinion in plant biology.

Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing

P. Dodds, J. Rathjen, D. Garnica, 2013, PloS one.

Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes

Christina A. Cuomo, C. Cuomo, P. Dodds, 2015, Front. Plant Sci..

Extraction of High Molecular Weight DNA from Fungal Rust Spores for Long Read Sequencing.

B. Schwessinger, J. Rathjen, 2017, Methods in molecular biology.

AvrPtoB Targets the LysM Receptor Kinase CERK1 to Promote Bacterial Virulence on Plants

J. Rathjen, V. Lipka, Selena Gimenez-Ibanez, 2009, Current Biology.

Plant NLR immune receptor Tm-22 activation requires NB-ARC domain-mediated self-association of CC domain

U. Nagalakshmi, Yiguo Hong, Yule Liu, 2020, PLoS pathogens.

Genetic and molecular requirements for function of the Pto/Prf effector recognition complex in tomato and Nicotiana benthamiana.

J. Rathjen, Alexi L. Balmuth, 2007, The Plant journal : for cell and molecular biology.

A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528

David J Studholme, Jeff H. Chang, Jeffery L Dangl, 2009, BMC Genomics.

Differential Suppression of Nicotiana benthamiana Innate Immune Responses by Transiently Expressed Pseudomonas syringae Type III Effectors

Jeff H. Chang, T. Boller, J. Rathjen, 2018, Front. Plant Sci..

Identification of Post-translational Modifications of Plant Protein Complexes

Alexandra M. E. Jones, J. Skłenar, J. Rathjen, 2014, Journal of Visualized Experiments.

Hierarchy and Roles of Pathogen-Associated Molecular Pattern-Induced Responses in Nicotiana benthamiana1[W]

C. Zipfel, J. Rathjen, Selena Gimenez-Ibanez, 2011, Plant Physiology.

Deciphering the mode of action and host recognition of bacterial type III effectors

J. Rathjen, Selena Gimenez-Ibanez, Dagmar R. Hann, 2010 .

Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1

J. Ecker, C. Zipfel, J. Rathjen, 2010, Proceedings of the National Academy of Sciences.

The case for the defense: plants versus Pseudomonas syringae.

J. Rathjen, Selena Gimenez-Ibanez, 2010, Microbes and infection.

The Receptor-Like Kinase SERK3/BAK1 Is Required for Basal Resistance against the Late Blight Pathogen Phytophthora infestans in Nicotiana benthamiana

C. Zipfel, S. Schornack, K. Findlay, 2011, PloS one.

Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana

Alexandra M. E. Jones, Frans J. M. Maathuis, John P. Rathjen, 2008, Proteomics.

The N-Terminal Domain of the Tomato Immune Protein Prf Contains Multiple Homotypic and Pto Kinase Interaction Sites*

J. Rathjen, Isabel M. L. Saur, Brendon F. Conlan, 2015, The Journal of Biological Chemistry.

The Tomato Prf Complex Is a Molecular Trap for Bacterial Effectors Based on Pto Transphosphorylation

Alexandra M. E. Jones, Tatiana S. Mucyn, J. Rathjen, 2013, PLoS pathogens.

Bacterial virulence effectors and their activities.

J. Rathjen, Selena Gimenez-Ibanez, Dagmar R. Hann, 2010, Current opinion in plant biology.

Regulation of tomato Prf by Pto-like protein kinases.

Tatiana S. Mucyn, J. Rathjen, Alexi L. Balmuth, 2009, Molecular plant-microbe interactions : MPMI.

The Tomato NBARC-LRR Protein Prf Interacts with Pto Kinase in Vivo to Regulate Specific Plant Immunity[W]

Tatiana S. Mucyn, A. Clemente, J. Rathjen, 2006, The Plant Cell Online.

Development of a Rapid in planta BioID System as a Probe for Plasma Membrane-Associated Immunity Proteins

J. Gorman, J. Rathjen, Isabel M. L. Saur, 2018, Front. Plant Sci..

Physical separation of haplotypes in dikaryons allows benchmarking of phasing accuracy in Nanopore and HiFi assemblies with Hi-C data

E. Stone, B. Schwessinger, P. Dodds, 2022, Genome biology.

Rapid and informative assays for Yd2, the barley yellow dwarf virus resistance gene, based on the nucleotide sequence of a closely linked gene

R. J. Simpson, R. Moritz, R. Symons, 1998, Molecular Breeding.

Plant Immunity: AvrPto Targets the Frontline

C. Zipfel, J. Rathjen, 2008, Current Biology.

A Chromosome Scale Assembly of an Australian Puccinia striiformis f. sp. tritici Isolate of the PstS1 Lineage.

B. Schwessinger, J. Rathjen, Yiheng Hu, 2022, Molecular Plant-Microbe Interactions.

Early events in the pathogenicity of Pseudomonas syringae on Nicotiana benthamiana.

J. Rathjen, Dagmar R. Hann, 2007, The Plant journal : for cell and molecular biology.

Linked machine learning classifiers improve species classification of fungi when using error-prone long-reads on extended metabarcodes

E. Stone, B. Schwessinger, J. Rathjen, 2021, bioRxiv.

Apoplastic Sugar Extraction and Quantification from Wheat Leaves Infected with Biotrophic Fungi.

J. Rathjen, V. Román-Reyna, 2017, Methods in molecular biology.

Pathogen Detection and Microbiome Analysis of Infected Wheat Using a Portable DNA Sequencer

E. Stone, B. Schwessinger, J. Rathjen, 2018, bioRxiv.

Tomato Pto encodes a functional N-myristoylation motif that is required for signal transduction in Nicotiana benthamiana.

J. Rathjen, A. Wu, Jeroen S de Vries, 2006, The Plant journal : for cell and molecular biology.

Dynamic changes of the Prf/Pto tomato resistance complex following effector recognition

A. M. Girija, Alexandra M. E. Jones, M. Gifford, 2023, Nature communications.

A comprehensive toolkit to enable MinION sequencing in any laboratory

David Kainer, David Eccles, David A. Eccles, 2018, bioRxiv.

Effector Proteins of the Bacterial Pathogen Pseudomonas syringae Alter the Extracellular Proteome of the Host Plant, Arabidopsis thaliana*S

Alexandra M. E. Jones, J. Rathjen, S. Peck, 2009, Molecular & Cellular Proteomics.

Precision genome editing of crops for improved disease resistance

J. Rathjen, Julian R. Greenwood, Xiaoxiao Zhang, 2023, Current Biology.

Plant pathology: Precision genome engineering keeps wheat disease at bay

J. Rathjen, Julian R. Greenwood, 2022, Current Biology.

Plant TIR domains physically interact with EDS1 family proteins to propagate immune signalling

P. Dodds, J. Rathjen, Xiaoxiao Zhang, 2023, bioRxiv.

Multiplexed effector screening for recognition by endogenous resistance genes using positive defense reporters in wheat protoplasts

B. Schwessinger, J. Rathjen, Julian R. Greenwood, 2023, bioRxiv.

Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1

J. Ecker, C. Zipfel, J. Rathjen, 2010, Proceedings of the National Academy of Sciences.

Prf immune complexes of tomato are oligomeric and contain multiple Pto-like kinases that diversify effector recognition.

Alexandra M. E. Jones, Tatiana S. Mucyn, J. Rathjen, 2010, The Plant journal : for cell and molecular biology.

Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana

F. Maathuis, D. Sanders, J. Rathjen, 2008, Proteomics.

Dancing with the Stars: An Asterid NLR Family.

P. Dodds, J. Rathjen, 2017, Trends in plant science.

Tomato Pto encodes a functional N-myristoylation motif that is required for signal transduction in Nicotiana benthamiana.

J. Rathjen, A. Wu, Jeroen S de Vries, 2006, The Plant journal : for cell and molecular biology.

A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528

Jeff H. Chang, J. Dangl, D. MacLean, 2009, BMC Genomics.

Identification and correction of phase switches with Hi-C data in the Nanopore and HiFi chromosome-scale assemblies of the dikaryotic leaf rust fungus Puccinia triticina

David Lewis, B. Schwessinger, P. Dodds, 2021, bioRxiv.

Brassinosteroids inhibit pathogen-associated molecular pattern–triggered immune signaling independent of the receptor kinase BAK1

C. Zipfel, B. Schwessinger, J. Rathjen, 2011, Proceedings of the National Academy of Sciences.

Hierarchy and Roles of Pathogen-Associated Molecular Pattern-Induced Responses in Nicotiana benthamiana1[W]

C. Zipfel, J. Rathjen, Selena Gimenez-Ibanez, 2011, Plant Physiology.

The long and winding road: virulence effector proteins of plant pathogenic bacteria

J. Rathjen, Dagmar R. Hann, 2010, Cellular and Molecular Life Sciences.