I. Carbone

发表

The genome sequence of the rice blast fungus Magnaporthe grisea

Cathryn J. Rehmeyer, B. Birren, C. Nusbaum, 2005, Nature.

Parasites as niche modifiers for the microbiome: A field test with multiple parasites

Corbin D. Jones, C. Mitchell, I. Carbone, 2020 .

Host availability drives distributions of fungal endophytes in the imperilled boreal realm

G. May, F. Lutzoni, A. Arnold, 2019, Nature Ecology & Evolution.

Genetic structure and post‐glacial expansion of Cornus florida L. (Cornaceae): integrative evidence from phylogeography, population demographic history, and species distribution modeling

P. Pearman, I. Carbone, A. Call, 2016 .

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 April 2013–31 May 2013

J. Bennetzen, A. Cortesero, D. Poinsot, 2017, Molecular ecology resources.

Challenges in analysis and interpretation of microsatellite data for population genetic studies

I. Carbone, A. Putman, 2014, Ecology and evolution.

Biocontrol Strains Differentially Shift the Genetic Structure of Indigenous Soil Populations of Aspergillus flavus

R. Kemerait, G. Payne, I. Carbone, 2019, Front. Microbiol..

Selection of Aspergillus flavus isolates for biological control of aflatoxins in corn

James T. Monacell, W. Shier, I. Carbone, 2011 .

Effect of sexual recombination on population diversity in aflatoxin production by Aspergillus flavus and evidence for cryptic heterokaryosis

James T. Monacell, E. Stone, J. Dorner, 2012, Molecular ecology.

A method for designing primer sets for speciation studies in filamentous ascomycetes

Ignazio Carbone, L. Kohn, I. Carbone, 1999 .

2 - Inferring Process from Pattern in Fungal Population Genetics

L. Kohn, I. Carbone, 2004 .

Population structure and migration of the Tobacco Blue Mold Pathogen, Peronospora tabacina, into North America and Europe

J. Ristaino, I. Carbone, M. Blanco-Meneses, 2018, Molecular ecology.

Global population structure and adaptive evolution of aflatoxin‐producing fungi

I. Carbone, R. Olarte, G. Moore, 2017, Ecology and evolution.

Mycotoxins that affect the North American agri-food sector: state of the art and directions for the future

S. Tittlemier, G. Munkvold, D. Bhatnagar, 2014 .

A calibrated human Y-chromosomal phylogeny based on resequencing

Ignazio Carbone, Yali Xue, Chris Tyler-Smith, 2013, Genome research.

The evolutionary history of Cytochrome P450 genes in four filamentous Ascomycetes

R. Dean, I. Carbone, J. Deng, 2007, BMC Evolutionary Biology.

Resurgence of cucurbit downy mildew in the United States: Insights from comparative genomic analysis of Pseudoperonospora cubensis

L. Quesada-Ocampo, I. Carbone, P. Ojiambo, 2017, Ecology and evolution.

Phylogenetic history of Phytophthora cryptogea and P. drechsleri isolates from floriculture crops in North Carolina greenhouses.

I. Carbone, D. Benson, H. A. Olson, 2011, Phytopathology.

The Population Dynamics of Aflatoxigenic Aspergilli

I. Carbone, K. Ehrlich, G. Moore, 2011 .

17 The Population Dynamics of Aflatoxigenic Aspergilli

I. Carbone, K. Ehrlich, G. Moore, 2011 .

Recombination and lineage‐specific gene loss in the aflatoxin gene cluster of Aspergillus flavus

I. Carbone, G. Moore, B. Horn, 2009, Molecular ecology.

Recombination, balancing selection and adaptive evolution in the aflatoxin gene cluster of Aspergillus parasiticus

I. Carbone, J. Ramírez-Prado, B. Horn, 2007, Molecular ecology.

Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens

R. Dean, G. Conant, A. J. Powell, 2008, BMC Genomics.

Characterization of morphological changes within stromata during sexual reproduction in Aspergillus flavus

G. Payne, D. Bhatnagar, I. Carbone, 2020, Mycologia.

Sexual Reproduction in Aspergillus flavus Sclerotia: Acquisition of Novel Alleles from Soil Populations and Uniparental Mitochondrial Inheritance

I. Carbone, B. Horn, Rakhi Singh, 2016, PloS one.

Mycelial interactions inSclerotinia sclerotiorum

James B. Anderson, L. Kohn, I. Carbone, 1990 .

Mycelial Interactions in Sclerotinia sclerotiorum

James B. Anderson, L. Kohn, I. Carbone, 2011 .

Climate change impacts on mycotoxin risks in US maize

P. Paul, G. Munkvold, G. Payne, 2011 .

Characterization and distribution of mating-type genes of the turfgrass pathogen Sclerotinia homoeocarpa on a global scale.

I. Carbone, A. Putman, L. Tredway, 2015, Fungal genetics and biology : FG & B.

Multilocus nested haplotype networks extended with DNA fingerprints show common origin and fine‐scale, ongoing genetic divergence in a wild microbial metapopulation

L. Kohn, I. Carbone, 2001, Molecular ecology.

The sexual state of Aspergillus parasiticus

I. Carbone, J. Ramírez-Prado, B. Horn, 2009, Mycologia.

Characterization and population analysis of the mating-type genes in Aspergillus flavus and Aspergillus parasiticus.

I. Carbone, J. Ramírez-Prado, G. Moore, 2008, Fungal genetics and biology : FG & B.

Evidence that the Human Pathogenic Fungus Cryptococcus neoformans var. grubii May Have Evolved in Africa

T. G. Mitchell, T. Mitchell, I. Carbone, 2011, PloS one.

Sexual reproduction in Aspergillus flavus

I. Carbone, G. Moore, B. Horn, 2009, Mycologia.

Medicine Access

I. Carbone, K. Ehrlich, B. Horn, 2017 .

Sexual reproduction and recombination in the aflatoxin-producing fungus Aspergillus parasiticus.

I. Carbone, J. Ramírez-Prado, B. Horn, 2009, Fungal genetics and biology : FG & B.

Trial Summary on the Comparison of Various Non-Aflatoxigenic Strains ofAspergillus flavuson Mycotoxin Levels and Yield in Maize

I. Carbone, R. Heiniger, Megan S. Molo, 2019, Agronomy Journal.

Genetic Structure of Soil Populations of Aspergillus Section Flavi and Efficacy of Biocontrol of Aflatoxin Contamination in Corn . ( Under the direction of Dr

I. Carbone, P. Ojiambo, 2014 .

Sexual reproduction in Aspergillus flavus sclerotia naturally produced in corn.

I. Carbone, M. Lamb, V. Sobolev, 2014, Phytopathology.

Sexual reproduction in aflatoxin-producing Aspergillus nomius

I. Carbone, G. Moore, B. Horn, 2011, Mycologia.

Multi-locus DNA sequence analysis, antifungal agent susceptibility, and fungal keratitis outcome in horses from Southeastern United States

M. Jacob, M. Cubeta, I. Carbone, 2019, PloS one.

Identification and characterization of Septoria steviae as the causal agent of Septoria leaf spot disease of stevia in North Carolina

Maximo T. Larkin, H. Shew, M. Cubeta, 2019, Mycologia.

An open-access T-BAS phylogeny for emerging Phytophthora species

J. Ristaino, I. Carbone, A. Saville, 2022, bioRxiv.

Methodological Approaches Frame Insights into Endophyte Richness and Community Composition

E. Hom, A. Arnold, I. Carbone, 2021, Microbial Ecology.

Nuclear heterogeneity in conidial populations of Aspergillus flavus.

G. Payne, D. Bhatnagar, I. Carbone, 2015, Fungal genetics and biology : FG & B.

Asymmetrical lineage introgression and recombination in populations of Aspergillus flavus: Implications for biological control

James B. White, T. Isakeit, K. Wise, 2022, bioRxiv.

Ignazio Carbone, M. Cubeta, I. Carbone, 2008, Mycologia.

Ribosomal DNA Sequence Divergence within Internal Transcribed Spacer 1 of the Sclerotiniaceae

L. Kohn, I. Carbone, 1993 .

Population structure and diversity of an invasive pine needle pathogen reflects anthropogenic activity

M. Wingfield, B. Wingfield, T. Kirisits, 2014, Ecology and evolution.

Development of sexual structures influences metabolomic and transcriptomic profiles in Aspergillus flavus.

G. Payne, D. Bhatnagar, I. Carbone, 2022, Fungal biology.

Molecular diversity and evolutionary processes of Alternaria solani in Brazil inferred using genealogical and coalescent approaches.

A. Moya, F. González-Candelas, I. Carbone, 2009, Phytopathology.

Sexual reproduction in Aspergillus tubingensis from section Nigri

I. Carbone, S. Peterson, R. Olarte, 2013, Mycologia.

Tissue storage and primer selection influence pyrosequencing‐based inferences of diversity and community composition of endolichenic and endophytic fungi

Ignazio Carbone, Jolanta Miadlikowska, James T. Monacell, 2014, Molecular ecology resources.

Cultural and Genetic Approaches to Manage Aflatoxin Contamination: Recent Insights Provide Opportunities for Improved Control.

I. Carbone, P. Ojiambo, P. Battilani, 2018, Phytopathology.

Virulence Structure Within Populations of Pseudoperonospora cubensis in the United States.

I. Carbone, P. Ojiambo, A. Lebeda, 2017, Phytopathology.

Occurrence and Distribution of Mating Types of Pseudoperonospora cubensis in the United States.

I. Carbone, P. Ojiambo, Y. Cohen, 2017, Phytopathology.

IMPACT OF POPULATION STRUCTURE ON GENETIC DIVERSITY OF A POTENTIAL VACCINE TARGET IN THE CANINE HOOKWORM (ANCYLOSTOMA CANINUM)

G. Gibson, I. Carbone, P. Arasu, 2007, The Journal of parasitology.

Clarireedia: A new fungal genus comprising four pathogenic species responsible for dollar spot disease of turfgrass.

M. Boehm, I. Carbone, J. Crouch, 2018, Fungal biology.

Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species

Q. Zeng, C. Nusbaum, C. Russ, 2015, Current Genetics.

Recombination and migration of Cryphonectria hypovirus 1 as inferred from gene genealogies and the coalescent.

Yir-Chung Liu, M. Milgroom, I. Carbone, 2004, Genetics.

Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species.

G. May, F. Lutzoni, A. Arnold, 2014, American journal of botany.

resequencing A calibrated human Y-chromosomal phylogeny based on

Yali, Shane A. McCarthy, C. Tyler-Smith, 2012 .

Ancient isolation and independent evolution of the three clonal lineages of the exotic sudden oak death pathogen Phytophthora ramorum

N. Grünwald, I. Carbone, E. Goss, 2009, Molecular ecology.

Genetic Map and Heritability of Aspergillus flavus.

I. Carbone, B. Horn, R. Gell, 2020, Fungal genetics and biology : FG & B.

An experimental strategy for preparing circular ssDNA virus genomes for next-generation sequencing.

S. Duffy, L. Hanley-Bowdoin, I. Carbone, 2021, Journal of virological methods.

An improved experimental pipeline for preparing circular ssDNA viruses for next-generation sequencing

S. Duffy, L. Hanley-Bowdoin, I. Carbone, 2020, bioRxiv.

Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombination

David A. Rasmussen, I. Carbone, Fangfang Guo, 2022, bioRxiv.

Host availability drives distributions of fungal endophytes in the imperilled boreal realm

G. May, F. Lutzoni, A. Arnold, 2019, Nature Ecology & Evolution.

Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale

Erik F. Y. Hom, F. Lutzoni, E. Hom, 2021, Communications Biology.

T‐BAS: Tree‐Based Alignment Selector toolkit for phylogenetic‐based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life

Mark A. Miller, Mark A. Miller, Ignazio Carbone, 2016, Bioinform..

Gene duplication, modularity and adaptation in the evolution of the aflatoxin gene cluster

I. Carbone, J. Ramírez-Prado, B. Horn, 2007, BMC Evolutionary Biology.

Enhanced diversity and aflatoxigenicity in interspecific hybrids of Aspergillus flavus and Aspergillus parasiticus

James T. Monacell, E. Stone, J. Dorner, 2015, Molecular ecology.

Population genetic analysis of Tomato spotted wilt virus on peanut in North Carolina and Virginia.

M. Cubeta, I. Carbone, J. Moyer, 2011, Phytopathology.

Gene Flow of Phytophthora infestans Between Refuse Piles, and Organic and Conventional Potato Fields in Southern Flevoland, The Netherlands

F. Govers, Chia-Hui Hu, J. Ristaino, 2022, Potato Research.

Mobyle SNAP Workbench: a web-based analysis portal for population genetics and evolutionary genomics

Ignazio Carbone, James T. Monacell, I. Carbone, 2014, Bioinform..

New Populations of Sclerotinia sclerotiorum from Lettuce in California and Peas and Lentils in Washington.

L. Kohn, K. Subbarao, N. Grünwald, 2007, Phytopathology.

An Andean origin of Phytophthora infestans inferred from mitochondrial and nuclear gene genealogies

Ignazio Carbone, J. Ristaino, I. Carbone, 2007, Proceedings of the National Academy of Sciences.

SNAP: Combine and Map modules for multilocus population genetic analysis

Ignazio Carbone, David L. Aylor, Eric W. Price, 2006, Bioinform..

Phylogeography and Genotype-Symptom Associations in Early and Late Season Infections of Canola by Sclerotinia sclerotiorum.

D. V. Phillips, S. Gold, L. Kohn, 2002, Phytopathology.

PATTERNS OF DESCENT IN CLONAL LINEAGES AND THEIR MULTILOCUS FINGERPRINTS ARE RESOLVED WITH COMBINED GENE GENEALOGIES

James B. Anderson, L. Kohn, I. Carbone, 1999, Evolution; international journal of organic evolution.

Population genetic analysis of an Eastern U.S. wheat powdery mildew population reveals geographic subdivision and recent common ancestry with U.K. and Israeli populations.

J. Murphy, I. Carbone, C. Cowger, 2009, Phytopathology.

Chloroplast DNA phylogeography in long-lived Huon pine, a Tasmanian rain forest conifer

I. Carbone, C. Clark, 2008 .

A microbial population–species interface: nested cladistic and coalescent inference with multilocus data

L. Kohn, I. Carbone, 2001, Molecular ecology.

Population diversity of cassava mosaic begomoviruses increases over the course of serial vegetative propagation

S. Duffy, L. Hanley-Bowdoin, Erik Lavington, 2021, bioRxiv.

Phylogenetic Analysis of Pasteuria penetrans by Use of Multiple Genetic Loci

K. Davies, I. Carbone, C. Opperman, 2005, Journal of bacteriology.

Dataset for transcriptomic profiles associated with development of sexual structures in Aspergillus flavus

G. Payne, D. Bhatnagar, I. Carbone, 2022, Data in brief.

Sexual recombination in Aspergillus tubingensis

I. Carbone, R. Olarte, B. Horn, 2015, Mycologia.

Rapid multilocus adaptation of clonal cabbage leaf curl virus populations to Arabidopsis thaliana

S. Duffy, I. Carbone, J. S. Hoyer, 2021, bioRxiv.

Sexuality Generates Diversity in the Aflatoxin Gene Cluster: Evidence on a Global Scale

E. Stone, J. Dorner, G. Wright, 2013, PLoS pathogens.

Virulence Structure of the Eastern U.S. Wheat Powdery Mildew Population.

J. Murphy, I. Carbone, D. Marshall, 2008, Plant disease.

Methodological Approaches Frame Insights into Endophyte Richness and Community Composition

Erik F. Y. Hom, E. Hom, A. Arnold, 2021, Microbial Ecology.

SNAP: workbench management tool for evolutionary population genetic analysis

Ignazio Carbone, Eric W. Price, I. Carbone, 2005, Bioinform..

Population history and process, nested clade and coalescent analysis of multiple gene genealogies in a parasite of agricultural and wild plants

I. Carbone, 2000 .

A group-I intron in the mitochondrial small subunit ribosomal RNA gene of Sclerotinia sclerotiorum

James B. Anderson, L. Kohn, I. Carbone, 2004, Current Genetics.

Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale

Erik F. Y. Hom, E. Hom, F. Lutzoni, 2021, Communications biology.

Fragmentation of an aflatoxin-like gene cluster in a forest pathogen.

M. Cox, A. Rokas, J. Slot, 2013, The New phytologist.

Parasites, niche modification and the host microbiome: A field survey of multiple parasites

Corbin D. Jones, C. Mitchell, I. Carbone, 2021, Molecular ecology.

Cassava begomovirus species diversity changes during plant vegetative cycles

S. Duffy, L. Hanley-Bowdoin, A. Jacobson, 2023, Frontiers in Microbiology.

T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees

Mark A Miller, Mark A. Miller, Ignazio Carbone, 2019, Microbiology Resource Announcements.

Molecular Ecology Resources Primer Development Consortium

Brien, G. Q. Li, Andrew P. Martin, 2012 .

Balancing selection for aflatoxin in Aspergillus flavus is maintained through interference competition with, and fungivory by insects

B. Lazzaro, M. Milgroom, I. Carbone, 2017, Proceedings of the Royal Society B: Biological Sciences.

Plastic potential: how the phenotypes and adaptations of pathogens are influenced by microbial interactions within plants.

Corbin D. Jones, C. Mitchell, I. Carbone, 2017, Current opinion in plant biology.

Enhanced diversity and aflatoxigenicity in interspecific hybrids of Aspergillus flavus and Aspergillus parasiticus

James T. Monacell, J. Dorner, I. Carbone, 2015, Molecular ecology.

Sexual reproduction in aflatoxin-producing Aspergillus nomius

I. Carbone, G. Moore, B. Horn, 2011, Mycologia.

Medicine Access

I. Carbone, S. B. Beltz, G. Moore, 2017 .

Towards a nomenclatural clarification of the Peltigera ponojensis/monticola clade including metagenomic sequencing of type material and the introduction of P. globulata Miadl. & Magain sp. nov.

F. Lutzoni, J. Miadlikowska, Michaela Schmull, 2023, The Lichenologist.

Clarireedia: A new fungal genus comprising four pathogenic species responsible for dollar spot disease of turfgrass.

M. Boehm, I. Carbone, J. Crouch, 2018, Fungal biology.

Bmc Evolutionary Biology the Evolutionary History of Cytochrome P450 Genes in Four Filamentous Ascomycetes

R. Dean, I. Carbone, Jixin Deng, 2022 .

Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species

C. Nusbaum, C. Russ, J. Thorne, 2015, Current Genetics.