Brian Foster

发表

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

Albee Y. Ling, J. Heitman, P. Górecki, 2012, Science.

Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot

Natalia N. Ivanova, N. Kyrpides, P. Arruda, 2019, Scientific Data.

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

Natalia N. Ivanova, N. Kyrpides, J. Birch, 2019, Scientific Data.

Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07T)

N. Kyrpides, H. Klenk, F. Chen, 2010, Standards in genomic sciences.

Second Annual DOE Joint Genome Institute User Meeting

J. Schmutz, Cliff Han, Hui Sun, 2007 .

Massive Changes in Genome Architecture Accompany the Transition to Self-Fertility in the Filamentous Fungus Neurospora tetrasperma

Alla Lapidus, Jason E. Stajich, Andrea Aerts, 2011, Genetics.

Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing

R. Egan, E. Eloe-Fadrosh, Brian Foster, 2022, bioRxiv.

Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome

Natalia N. Ivanova, N. Kyrpides, Krishna Palaniappan, 2020, Microbiology Resource Announcements.

Multiomics in the central Arctic Ocean for benchmarking biodiversity change

Natalia N. Ivanova, A. Salamov, N. Kyrpides, 2022, PLoS biology.

Isolation of potential plant growth-promoting bacteria from nodules of legumes grown in arid Botswana soil

Natalia N. Ivanova, N. Kyrpides, Krishna Palaniappan, 2020, bioRxiv.

DOE JGI Metagenome Workflow

Marcel Huntemann, Rekha Seshadri, Emiley A. Eloe-Fadrosh, 2021, mSystems.

Phylogenetic and phylogenomic overview of the Polyporales

A. Salamov, D. Hibbett, J. Townsend, 2013, Mycologia.

Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria

Alla Lapidus, Eric E. Allen, Daniel W. Udwary, 2009, The ISME Journal.

Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale

William D. Duncan, C. Mungall, S. Canon, 2022, Frontiers in Bioinformatics.

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

Natalia N. Ivanova, Mariam R. Rizkallah, S. Tringe, 2021, Nature Communications.

DOE JGI Metagenome Workflow

Natalia N. Ivanova, Y. Yoshinaga, R. O’Malley, 2021, mSystems.

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

Natalia N. Ivanova, N. Kyrpides, J. Birch, 2019, Scientific Data.

Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria

Natalia N. Ivanova, N. Kyrpides, N. Shapiro, 2021, Microbiology resource announcements.

Complete genome sequence of Thioalkalivibrio sp. K90mix

P. D’haeseleer, N. Kyrpides, A. Lapidus, 2011, Standards in genomic sciences.

The role of zinc in the adaptive evolution of polar phytoplankton

Natalia N. Ivanova, S. Tringe, N. Kyrpides, 2022, Nature Ecology & Evolution.

Complete genome sequence of Cellulomonas flavigena type strain (134)

Nikos, Tanja, Loren, 2014 .

Complete genome sequence of Cellulomonas flavigena type strain (134T)

Lynne A. Goodwin, N. Kyrpides, H. Klenk, 2010, Standards in genomic sciences.

Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot

Natalia N. Ivanova, N. Kyrpides, P. Arruda, 2019, Scientific Data.

A single-cell genomics pipeline for environmental microbial eukaryotes

Jan P. Meier-Kolthoff, A. Salamov, S. Singer, 2021, iScience.

Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California

S. Tringe, J. Gilbert, S. Malfatti, 2014, Standards in genomic sciences.

POLISHER: a Tool for Using Ultra Short Reads in Microbial Genome Finishing

Alla Lapidus, Steve Lowry, Eugene Goltsman, 2008 .

Impact of soil salinity on the cowpea nodule-microbiome and the isolation of halotolerant PGPR strains to promote plant growth under salinity stress

Natalia N. Ivanova, N. Kyrpides, M. Pellegrini, 2019, bioRxiv.

Metagenomes from two microbial consortia associated with Santa Barbara seep oil.

Marcel Huntemann, Amrita Pati, Ioanna Pagani, 2014, Marine genomics.

Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina)

Natalia N. Ivanova, N. Kyrpides, I. Chen, 2020, Microbiology Resource Announcements.

Terabase-Scale Coassembly of a Tropical Soil Microbiome

K. Yelick, A. Salamov, L. Oliker, 2023, Microbiology spectrum.

Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California

S. Tringe, J. Gilbert, S. Malfatti, 2014, Standards in genomic sciences.

The prepared sample libraries were quantified by qPCR using KAPA Biosystem ’ s next-generation sequencing library qPCR kit and run on a Roche LightCycler

Marcel Huntemann, Jack A. Gilbert, Amrita Pati, 2014 .

Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems.

A. Kohler, K. LaButti, Alicia Clum, 2023, The New phytologist.

Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil

Natalia N. Ivanova, N. Kyrpides, Krishna Palaniappan, 2020, Microbiology Resource Announcements.

POLISHER: a Tool for Using Ultra Short Reads in Microbial Genome Finishing

A. Lapidus, Steve Lowry, K. LaButti, 2008 .