K. Syed

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The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

Albee Y. Ling, J. Heitman, P. Górecki, 2012, Science.

Software for molecular docking: a review

J. Tuszynski, K. Syed, N. S. Pagadala, 2017, Biophysical Reviews.

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication

Wendy S. Schackwitz, J. Heitman, A. Salamov, 2016, Current Biology.

In silico analysis of cytochrome P450 monooxygenases in chronic granulomatous infectious fungus Sporothrix schenckii: Special focus on CYP51.

D. Gront, K. Syed, L. Wieteska, 2018, Biochimica et biophysica acta. Proteins and proteomics.

Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood

Masahiro Samejima, Bernard Henrissat, Benjamin Held, 2014, PLoS genetics.

Genomewide annotation and comparative genomics of cytochrome P450 monooxygenases (P450s) in the polypore species Bjerkandera adusta, Ganoderma sp. and Phlebia brevispora

R. Riley, D. Nelson, J. Yadav, 2013, Mycologia.

Comparative analyses and structural insights of new class glutathione transferases in Cryptosporidium species

K. Syed, Wanping Chen, Ikechukwu Achilonu, 2020, Scientific Reports.

Cytochrome b₅ reductase-cytochrome b₅ as an active P450 redox enzyme system in Phanerochaete chrysosporium: atypical properties and in vivo evidence of electron transfer capability to CYP63A2.

Chandramohan Kattamuri, T. B. Thompson, J. Yadav, 2011, Archives of biochemistry and biophysics.

Erratum: Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis (Proceedings of the National Academy of Sciences (2012) 109 (5458-5463) DOI: 10.1073/pnas. 1119912109)

A. Salamov, D. Hibbett, S. Lucas, 2012 .

CYP63A2, a Catalytically Versatile Fungal P450 Monooxygenase Capable of Oxidizing Higher-Molecular-Weight Polycyclic Aromatic Hydrocarbons, Alkylphenols, and Alkanes

Aleksey A. Porollo, A. Porollo, J. Yadav, 2013, Applied and Environmental Microbiology.

Lifestyles Shape the Cytochrome P450 Repertoire of the Bacterial Phylum Proteobacteria

D. Gront, D. Nelson, K. Syed, 2022, International journal of molecular sciences.

Molecular evolutionary dynamics of cytochrome P450 monooxygenases across kingdoms: Special focus on mycobacterial P450s

J. Tuszynski, D. Nelson, Jae-Hyuk Yu, 2016, Scientific Reports.

Comparative Analysis of P450 Signature Motifs EXXR and CXG in the Large and Diverse Kingdom of Fungi: Identification of Evolutionarily Conserved Amino Acid Patterns Characteristic of P450 Family

K. Syed, S. Mashele, 2014, PloS one.

Comparative Analysis of P 450 Signature Motifs EXXR and CXG in the Large and Diverse Kingdom of Fungi : Identification of Evolutionarily Conserved Amino Acid Patterns Characteristic of P 450 Family

K. Syed, S. Mashele, 2014 .

An overview of the factors playing a role in cytochrome P450 monooxygenase and ferredoxin interactions

K. Syed, J. Martínez-Oyanedel, Zinhle Edith Chiliza, 2020, Biophysical Reviews.

More P450s Are Involved in Secondary Metabolite Biosynthesis in Streptomyces Compared to Bacillus, Cyanobacteria, and Mycobacterium

D. Gront, D. Nelson, Jae-Hyuk Yu, 2020, International journal of molecular sciences.

An Unprecedented Number of Cytochrome P450s Are Involved in Secondary Metabolism in Salinispora Species

D. Gront, D. Nelson, K. Syed, 2022, Microorganisms.

Cytochrome P450 Monooxygenase CYP139 Family Involved in the Synthesis of Secondary Metabolites in 824 Mycobacterial Species

D. Nelson, A. Kappo, Jae-Hyuk Yu, 2019, International journal of molecular sciences.

Contrasting Health Effects of Bacteroidetes and Firmicutes Lies in Their Genomes: Analysis of P450s, Ferredoxins, and Secondary Metabolite Clusters

D. Gront, D. Nelson, K. Syed, 2022, International journal of molecular sciences.

A novel P450-initiated biphasic process for sustainable biodegradation of benzo[a]pyrene in soil under nutrient-sufficient conditions by the white rot fungus Phanerochaete chrysosporium.

J. Yadav, K. Syed, J. Shann, 2013, Journal of hazardous materials.

Genome-to-function characterization of novel fungal P450 monooxygenases oxidizing polycyclic aromatic hydrocarbons (PAHs).

H. Doddapaneni, J. Yadav, K. Syed, 2010, Biochemical and biophysical research communications.

The compound (3-{5-[(2,5-dimethoxyphenyl)amino]-1,3,4-thiadiazolidin-2-yl}-5,8-methoxy-2H-chromen-2-one) inhibits the prion protein conversion from PrPC to PrPSc with lower IC50 in ScN2a cells.

D. Wishart, T. Bjorndahl, K. Syed, 2017, Bioorganic & medicinal chemistry.

In silico strategies on prion pathogenic conversion and inhibition from PrPC –PrPSc

K. Syed, N. S. Pagadala, Rakesh K. Bhat, 2017, Expert opinion on drug discovery.

Cytochrome P450 monooxygenase analysis in free-living and symbiotic microalgae Coccomyxa sp. C-169 and Chlorella sp. NC64A

Jae-Hyuk Yu, K. Syed, Wanping Chen, 2015 .

Cytochrome P 450 monooxygenase analysis in free-living and symbiotic microalgae Coccomyxa sp . C-169 and Chlorella sp . NC 64 A

Jae-Hyuk Yu, K. Syed, Wanping Chen, 2015 .

Blooming of Unusual Cytochrome P450s by Tandem Duplication in the Pathogenic Fungus Conidiobolus coronatus

D. Nelson, Jae-Hyuk Yu, K. Syed, 2018, International journal of molecular sciences.

In Silico Structural Modeling and Analysis of Interactions of Tremellomycetes Cytochrome P450 Monooxygenases CYP51s with Substrates and Azoles

D. Gront, K. Syed, J. Kryś, 2021, International journal of molecular sciences.

Genome-wide identification, annotation and characterization of novel thermostable cytochrome P450 monooxygenases from the thermophilic biomass-degrading fungi Thielavia terrestris and Myceliophthora thermophila

K. Syed, N. S. Pagadala, N. Kraševec, 2014, Genes & Genomics.

Impact of lifestyle on cytochrome P450 monooxygenase repertoire is clearly evident in the bacterial phylum Firmicutes

D. Nelson, K. Syed, Wanping Chen, 2020, Scientific Reports.

Comparative Genomics and Evolutionary Analysis of Cytochrome P450 Monooxygenases in Fungal Subphylum Saccharomycotina

K. Syed, Ipeleng Kopano Rosinah Kgosiemang, S. Mashele, 2014 .

Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize

A. Salamov, R. Mahadevan, S. Lucas, 2012, BMC Genomics.

P450 monooxygenases (P450ome) of the model white rot fungus Phanerochaete chrysosporium

J. Yadav, K. Syed, 2012, Critical reviews in microbiology.

A Fungal P450 (CYP5136A3) Capable of Oxidizing Polycyclic Aromatic Hydrocarbons and Endocrine Disrupting Alkylphenols: Role of Trp129 and Leu324

Aleksey A. Porollo, A. Porollo, J. Yadav, 2011, PloS one.

P450 Redox Enzymes in the White Rot Fungus Phanerochaete chrysosporium: Gene Transcription, Heterologous Expression, and Activity Analysis on the Purified Proteins

H. Doddapaneni, J. Yadav, K. Syed, 2010, Current Microbiology.

Systematic Identification and Evolutionary Analysis of Catalytically Versatile Cytochrome P450 Monooxygenase Families Enriched in Model Basidiomycete Fungi

J. Tuszynski, K. Syed, N. S. Pagadala, 2014, PloS one.

Ancient Bacterial Class Alphaproteobacteria Cytochrome P450 Monooxygenases Can Be Found in Other Bacterial Species

D. Gront, D. Nelson, K. Syed, 2021, International journal of molecular sciences.

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

A. Salamov, D. Hibbett, S. Lucas, 2012, Proceedings of the National Academy of Sciences.

Correction for Fernandez-Fueyo et al., Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

John, A. Salamov, D. Hibbett, 2012, Proceedings of the National Academy of Sciences.

D. Nelson, Jae-Hyuk Yu, K. Syed, 2019, Scientific Reports.

Evolution of Cytochrome P450 Enzymes and Their Redox Partners in Archaea

K. Syed, Wanping Chen, Bridget Valeria Zinhle Nkosi, 2023, International journal of molecular sciences.

Saprophytic to Pathogenic Mycobacteria: Loss of Cytochrome P450s Vis a Vis Their Prominent Involvement in Natural Metabolite Biosynthesis

D. Nelson, K. Syed, Tiara Padayachee, 2022, International journal of molecular sciences.

In Silico Analysis of P450s and Their Role in Secondary Metabolism in the Bacterial Class Gammaproteobacteria

D. Gront, D. Nelson, K. Syed, 2021, Molecules.

Comprehensive Analyses of Cytochrome P450 Monooxygenases and Secondary Metabolite Biosynthetic Gene Clusters in Cyanobacteria

D. Nelson, Jae-Hyuk Yu, K. Syed, 2020, International journal of molecular sciences.

Distribution and Diversity of Cytochrome P450 Monooxygenases in the Fungal Class Tremellomycetes

D. Nelson, A. Kappo, Jae-Hyuk Yu, 2019, International journal of molecular sciences.

Comparative Analyses of Cytochrome P450s and Those Associated with Secondary Metabolism in Bacillus Species

D. Nelson, A. Kappo, Jae-Hyuk Yu, 2018, International journal of molecular sciences.

Genome-Wide Annotation and Comparative Analysis of Cytochrome P450 Monooxygenases in Basidiomycete Biotrophic Plant Pathogens

Jae-Hyuk Yu, K. Syed, Wanping Chen, 2015, PloS one.

Diversity and evolution of cytochrome P450 monooxygenases in Oomycetes

D. Nelson, Jae-Hyuk Yu, K. Syed, 2015, Scientific Reports.

Cytochrome P450 Monooxygenase CYP53 Family in Fungi: Comparative Structural and Evolutionary Analysis and Its Role as a Common Alternative Anti-Fungal Drug Target

Jure Stojan, Suresh Babu Pakala, Radovan Komel, 2014, PloS one.

Comparative Analysis, Structural Insights, and Substrate/Drug Interaction of CYP128A1 in Mycobacterium tuberculosis

J. Tuszynski, J. Preto, D. Nelson, 2020, International journal of molecular sciences.

Comparative analyses and structural insights of the novel cytochrome P450 fusion protein family CYP5619 in Oomycetes

J. Tuszynski, D. Nelson, A. Kappo, 2018, Scientific Reports.

Diversification of Ferredoxins across Living Organisms

D. Gront, D. Nelson, K. Syed, 2021, Current issues in molecular biology.

Diversity and evolution of cytochrome P 450 monooxygenases in Oomycetes

D. Nelson, K. Syed, Wanping Chen, 2015 .

Comprehensive Comparative Analysis of Cholesterol Catabolic Genes/Proteins in Mycobacterial Species

D. Nelson, K. Syed, Mari van Wyk, 2019, International journal of molecular sciences.

Isolation and characterisation of endocrine disruptor nonylphenol-using bacteria from South Africa

K. Syed, C. Theron, C. Boucher, 2017 .

Caseinolytic Proteins (Clp) in the Genus Klebsiella: Special Focus on ClpK

K. Syed, Wanping Chen, Ikechukwu Achilonu, 2021, Molecules.

D. Nelson, Jae-Hyuk Yu, K. Syed, 2019, Scientific Reports.

Rational engineering of the fungal P450 monooxygenase CYP5136A3 to improve its oxidizing activity toward polycyclic aromatic hydrocarbons.

A. Porollo, J. Yadav, K. Syed, 2013, Protein engineering, design & selection : PEDS.

Pezizomycetes Genomes Reveal Diverse P450 Complements Characteristic of Saprotrophic and Ectomycorrhizal Lifestyles

K. Syed, Tiara Padayachee, David R Nelson, 2023, Journal of Fungi.

A novel P450-initiated biphasic process for sustainable biodegradation of benzo[a]pyrene in soil under nutrient-sufficient conditions by the white rot fungus Phanerochaete chrysosporium.

J. Yadav, K. Syed, J. Shann, 2013, Journal of hazardous materials.

Structure–Function Analysis of the Biotechnologically Important Cytochrome P450 107 (CYP107) Enzyme Family

K. Syed, Tiara Padayachee, David C. Lamb, 2023, Biomolecules.

Analysis of Somatic Mutations in the TCGA-LIHC Whole Exome Sequence to Identify the Neoantigen for Immunotherapy in Hepatocellular Carcinoma

K. Syed, Swetha Pulakuntla, Vaddi Damodara Reddy, 2023, Current issues in molecular biology.

Factors Alleviating Cadmium Toxicity in White Rot Fungus

J. Yadav, K. Syed, K. Bhainsa, 2014 .

An Updated Review on Probiotic Production and Applications

K. Syed, Vaddi Damodara Reddy, Guru Prasad Venkatesh, 2024, Gastroenterology Insights.

NF-κB Transcription Factors: Their Distribution, Family Expansion, Structural Conservation, and Evolution in Animals

K. Syed, Siphesihle Msweli, Suresh B. Pakala, 2024, International journal of molecular sciences.