V. Subramanian

发表

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

Vincent Lombard, Bernard Henrissat, Alla Lapidus, 2012, Proceedings of the National Academy of Sciences.

Phylogenetics-based identification and characterization of a superior 2,3-butanediol dehydrogenase for Zymomonas mobilis expression

M. Himmel, Min Zhang, V. Subramanian, 2020, Biotechnology for Biofuels.

Chapter 3: Omics Advances of Biosynthetic Pathways of Isoprenoid Production in Microalgae

V. Subramanian, J. Paniagua-Michel, 2017 .

Omics Advances of Biosynthetic Pathways of Isoprenoid Production in Microalgae

V. Subramanian, J. Paniagua-Michel, 2016 .

Identification of PADI 2 as a potential breast cancer biomarker and therapeutic target

O. Griffith, J. Gray, P. Thompson, 2017 .

Identification of PADI2 as a potential breast cancer biomarker and therapeutic target

O. Griffith, J. Gray, P. Thompson, 2012, BMC Cancer.

A comparative genomic analysis of the oxidative enzymes potentially involved in lignin degradation by Agaricus bisporus.

H. Doddapaneni, D. Cullen, V. Subramanian, 2013, Fungal genetics and biology : FG & B.

Citrullination-acetylation interplay guides E2F-1 activity during the inflammatory response

S. Knapp, N. L. La Thangue, P. Thompson, 2016, Science Advances.

Synthesis and Use of a Phosphonate Amidine to Generate an Anti-Phosphoarginine-Specific Antibody.

P. Thompson, V. Subramanian, J. Fuhrmann, 2015, Angewandte Chemie.

NETs Are a Source of Citrullinated Autoantigens and Stimulate Inflammatory Responses in Rheumatoid Arthritis

Pojen P. Chen, P. Thompson, J. Knight, 2013, Science Translational Medicine.

Picking the PAD Lock: Chemical and Biological Approaches to Identify PAD Substrates and Inhibitors

P. Thompson, V. Subramanian, D. J. Slade, 2014 .

Multiple facets of anoxic metabolism and hydrogen production in the unicellular green alga Chlamydomonas reinhardtii.

M. Posewitz, M. Seibert, A. Grossman, 2011, The New phytologist.

Neutrophil Extracellular Trap–Derived Enzymes Oxidize High‐Density Lipoprotein: An Additional Proatherogenic Mechanism in Systemic Lupus Erythematosus

B. Gillespie, P. Thompson, J. Knight, 2014, Arthritis & rheumatology.

Protecting group-free glycoligation by the desulfurative rearrangement of allylic disulfides as a means of assembly of oligosaccharide mimetics.

V. Subramanian, D. Crich, Myriame Moumé-Pymbock, 2011, The Journal of organic chemistry.

Erratum: Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis (Proceedings of the National Academy of Sciences (2012) 109 (5458-5463) DOI: 10.1073/pnas. 1119912109)

A. Salamov, D. Hibbett, S. Lucas, 2012 .

Targeting the arginine phosphatase YwlE with a catalytic redox-based inhibitor.

P. Thompson, V. Subramanian, J. Fuhrmann, 2013, ACS chemical biology.

Synthetic fungal multifunctional cellulases for enhanced biomass conversion

M. Himmel, Y. Bomble, V. Subramanian, 2020 .

Peptidylarginine Deiminase Inhibition Reduces Vascular Damage and Modulates Innate Immune Responses in Murine Models of Atherosclerosis

P. Thompson, J. Knight, W. Luo, 2014, Circulation research.

Role of P450 Monooxygenases in the Degradation of the Endocrine-Disrupting Chemical Nonylphenol by the White Rot Fungus Phanerochaete chrysosporium

J. Yadav, V. Subramanian, 2009, Applied and Environmental Microbiology.

Design, Synthesis, and Biological Evaluation of Tetrazole Analogs of Cl-Amidine as Protein Arginine Deiminase Inhibitors

P. Thompson, L. Anguish, S. Coonrod, 2015, Journal of medicinal chemistry.

Peptidylarginine deiminase inhibition disrupts NET formation and protects against kidney, skin and vascular disease in lupus-prone MRL/lpr mice

J. Hodgin, P. Thompson, J. Knight, 2014, Annals of the rheumatic diseases.

D-amino acid based protein arginine deiminase inhibitors: Synthesis, pharmacokinetics, and in cellulo efficacy.

Xiangli Cui, A. Chumanevich, L. Hofseth, 2012, ACS medicinal chemistry letters.

Chemical and biological methods to detect post‐translational modifications of arginine

P. Thompson, V. Subramanian, D. J. Slade, 2014, Biopolymers.

Peptidylarginine deiminase inhibition is immunomodulatory and vasculoprotective in murine lupus.

J. Hodgin, P. Thompson, J. Knight, 2013, The Journal of clinical investigation.

Inflammatory Responses in Rheumatoid Arthritis NETs Are a Source of Citrullinated Autoantigens and Stimulate

Pojen P. Chen, P. Thompson, J. Knight, 2013 .

Inhibiting Protein Arginine Deiminases Has Antioxidant Consequences

Xiangli Cui, Anne B. Hofseth, L. Hofseth, 2015, The Journal of Pharmacology and Experimental Therapeutics.

Title Page Inhibiting protein arginine deiminases has anti-oxidant consequences.

Xiangli Cui, Anne B. Hofseth, L. Hofseth, 2015 .

Insights into the mechanism of streptonigrin-induced protein arginine deiminase inactivation.

D. Boger, P. Thompson, V. Subramanian, 2014, Bioorganic & medicinal chemistry.

Synthesis and screening of a haloacetamidine containing library to identify PAD4 selective inhibitors.

P. Thompson, S. Coonrod, V. Subramanian, 2012, ACS chemical biology.

Intracellular pathways for lignin catabolism in white-rot fungi

Meagan C. Burnet, Elizabeth K. Eder, M. Himmel, 2021, Proceedings of the National Academy of Sciences.

Pd/C-mediated coupling of aryl halides with terminal alkynes in water

M. Pal, V. Subramanian, Sanjeev Kumar, 2005 .

Peptidylarginine deiminases: novel drug targets for prevention of neuronal damage following hypoxic ischemic insult (HI) in neonates

D. Peebles, P. Thompson, V. Subramanian, 2014, Journal of neurochemistry.

REGULATION AND HETEROLOGOUS EXPRESSION OF P450 ENZYME SYSTEM COMPONENTS OF THE WHITE ROT FUNGUS PHANEROCHAETE CHRYSOSPORIUM.

J. Yadav, V. Subramanian, 2008, Enzyme and microbial technology.

Assessment of the in-vivo and in-vitro antioxidant potential of Strychnos potatorum Linn. seeds in Freunds adjuvant induced arthritic rats

V. Subramanian, Senthamil Selvan Perumal, S. Ekambaram, 2011 .

Evaluation of antiarthritic activity of Strychnos potatorum Linn seeds in Freund's adjuvant induced arthritic rat model

V. Subramanian, Senthamil Selvan Perumal, S. Ekambaram, 2010 .

D ‑ Amino Acid-Based Protein Arginine Deiminase Inhibitors: Synthesis, Pharmacokinetics, and in Cellulo E ﬃ cacy

A. Chumanevich, L. Hofseth, P. Thompson, 2012 .

Seeing citrulline: development of a phenylglyoxal-based probe to visualize protein citrullination.

A. Chumanevich, L. Hofseth, P. Thompson, 2012, Journal of the American Chemical Society.

Genome-to-function characterization of novel fungal P450 monooxygenases oxidizing polycyclic aromatic hydrocarbons (PAHs).

H. Doddapaneni, J. Yadav, K. Syed, 2010, Biochemical and biophysical research communications.

Ferredoxin5 Deletion Affects Metabolism of Algae during the Different Phases of Sulfur Deprivation1

M. Ghirardi, V. Subramanian, A. Dubini, 2019, Plant Physiology.

Altered Fermentative Metabolism in Chlamydomonas reinhardtii Mutants Lacking Pyruvate Formate Lyase and Both Pyruvate Formate Lyase and Alcohol Dehydrogenase[W]

M. Posewitz, M. Seibert, A. Grossman, 2012, Plant Cell.

A Mutant in the ADH1 Gene of Chlamydomonas reinhardtii Elicits Metabolic Restructuring during Anaerobiosis1[W]

M. Posewitz, M. Seibert, A. Grossman, 2012, Plant Physiology.

Utilization of the Soft Agar Colony Formation Assay to Identify Inhibitors of Tumorigenicity in Breast Cancer Cells.

P. Thompson, S. Horibata, S. Coonrod, 2015, Journal of visualized experiments : JoVE.

Synthesis of isocoumarins via Pd/C-mediated reactions of o-iodobenzoic acid with terminal alkynes.

M. Pal, V. Subramanian, Deepak K. Barange, 2005, The Journal of organic chemistry.

Synthesis of isocoumarins via Pd/C-mediated reactions of o-iodobenzoic acid with terminal alkynes.

M. Pal, V. Subramanian, Deepak K. Barange, 2005, The Journal of organic chemistry.

Palladium mediated stereospecific synthesis of 3-enynyl substituted thioflavones/flavones

M. Pal, V. Subramanian, K. Parasuraman, 2004 .

Palladium catalyzed reaction in aqueous DMF: synthesis of 3-alkynyl substituted flavones in the presence of prolinol

M. Pal, V. Subramanian, K. Parasuraman, 2003 .

Pd/C mediated synthesis of 2-substituted benzo[b]furans/nitrobenzo[b]furans in water☆

M. Pal, V. Subramanian, K. R. Yeleswarapu, 2003 .

Synthesis of 2-Substituted Indoles via Pd/C-Catalyzed Reaction in Water

M. Pal, V. Subramanian, Venkateswara Rao Batchu, 2004 .

Pd/C-Mediated Synthesis of 2-Substituted Benzo[b]furans/nitrobenzo[b]furans in Water.

M. Pal, V. Subramanian, K. R. Yeleswarapu, 2004 .

Palladium‐Mediated Stereospecific Synthesis of 3‐Enynyl Substituted Thioflavones/Flavones.

M. Pal, V. Subramanian, K. Parasuraman, 2004 .

Synthesis of 2‐Substituted Indoles via Pd/C‐Catalyzed Reaction in Water.

M. Pal, V. Subramanian, Venkateswara Rao Batchu, 2005 .

β-Selective Glucosylation in the Absence of Neighboring Group Participation: Influence of the 3,4-O-Bisacetal Protecting System.

V. Subramanian, D. Crich, Thomas K. Hutton, 2007, Tetrahedron.

Antiulcer Activity of Indigenous Plant Operculina turpethum Linn.

B. Periyasamy, V. Subramanian, M. Narayanan, 2013, Evidence-based complementary and alternative medicine : eCAM.

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion

A. Salamov, D. Hibbett, S. Lucas, 2009, Proceedings of the National Academy of Sciences.

Immunoproteomic identification of secretory and subcellular protein antigens and functional evaluation of the secretome fraction of Mycobacterium immunogenum, a newly recognized species of the Mycobacterium chelonae-Mycobacterium abscessus group.

V. Subramanian, M. Gupta, J. S. Yadav, 2009, Journal of proteome research.

β-Selective Glucosylation in the Absence of Neighboring Group Participation: Influence of the 3,4-O-Bisacetal Protecting System.

V. Subramanian, D. Crich, Thomas K. Hutton, 2007, Tetrahedron.

Development of a Selective Inhibitor of Protein Arginine Deiminase 2.

Paul McEwan, Paul R Thompson, P. McEwan, 2017, Journal of medicinal chemistry.

Modulation of calcium-induced cell death in human neural stem cells by the novel peptidylarginine deiminase–AIF pathway

P. Ferretti, P. Thompson, V. Subramanian, 2014, Biochimica et biophysica acta.

Peptidylarginine deiminase 2-catalyzed histone H3 arginine 26 citrullination facilitates estrogen receptor α target gene activation

Michael J. Bolt, Michael J. Guertin, Shenmin Zhang, 2012, Proceedings of the National Academy of Sciences.

1,3,5‐Trimethyl‐1,3,5‐triazacyclohexane

V. Subramanian, 2009 .

Physiological Regulation, Xenobiotic Induction, and Heterologous Expression of P450 Monooxygenase Gene pc-3 (CYP63A3), a New Member of the CYP63 Gene Cluster in the White-rot FungusPhanerochaete chrysosporium

H. Doddapaneni, J. Yadav, V. Subramanian, 2005, Current Microbiology.

The Induction of microRNA-16 in Colon Cancer Cells by Protein Arginine Deiminase Inhibition Causes a p53-Dependent Cell Cycle Arrest

A. Schetter, C. Harris, Deepak Poudyal, 2013, PloS one.

P450 Redox Enzymes in the White Rot Fungus Phanerochaete chrysosporium: Gene Transcription, Heterologous Expression, and Activity Analysis on the Purified Proteins

H. Doddapaneni, J. Yadav, K. Syed, 2010, Current Microbiology.

P450ome of the white rot fungus Phanerochaete chrysosporium: structure, evolution and regulation of expression of genomic P450 clusters.

H. Doddapaneni, J. Yadav, V. Subramanian, 2006, Biochemical Society transactions.

Abrogation of collagen-induced arthritis by a peptidyl arginine deiminase inhibitor is associated with modulation of T cell-mediated immune responses

N. L. La Thangue, R. Fischer, P. Thompson, 2016, Scientific Reports.

Potential role for PADI-mediated histone citrullination in preimplantation development

P. Thompson, S. Coonrod, V. Subramanian, 2012, BMC Developmental Biology.

Metabolic Pathways in Green Algae with Potential Value for Biofuel Production

M. Seibert, V. Subramanian, A. Dubini, 2012 .

Citrullination/Methylation Crosstalk on Histone H3 Regulates ER-Target Gene Transcription.

R. Campbell, Y. Qian, P. Thompson, 2017, ACS chemical biology.

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

A. Salamov, D. Hibbett, S. Lucas, 2012, Proceedings of the National Academy of Sciences.

Improving biofuel production in phototrophic microorganisms with systems biology

Robert E. Jinkerson, M. Posewitz, V. Subramanian, 2011 .

Correction for Fernandez-Fueyo et al., Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

John, A. Salamov, D. Hibbett, 2012, Proceedings of the National Academy of Sciences.

The development of N-α-(2-carboxyl)benzoyl-N(5)-(2-fluoro-1-iminoethyl)-l-ornithine amide (o-F-amidine) and N-α-(2-carboxyl)benzoyl-N(5)-(2-chloro-1-iminoethyl)-l-ornithine amide (o-Cl-amidine) as second generation protein arginine deiminase (PAD) inhibitors.

Yuan Luo, A. Chumanevich, L. Hofseth, 2011, Journal of medicinal chemistry.

450 ome of the white rot fungus Phanerochaete chrysosporium : structure , evolution and regulation of expression of genomic P 450 clusters

H. Doddapaneni, J. Yadav, V. Subramanian, 2006 .

Dechalcogenative allylic selenosulfide and disulfide rearrangements: complementary methods for the formation of allylic sulfides in the absence of electrophiles. Scope, limitations, and application to the functionalization of unprotected peptides in aqueous media.

Venkata R. Krishnamurthy, V. Subramanian, D. Crich, 2007, Journal of the American Chemical Society.

A versatile 2A peptide-based bicistronic protein expressing platform for the industrial cellulase producing fungus, Trichoderma reesei

Michael E Himmel, J. O. Baker, M. Himmel, 2017, Biotechnology for Biofuels.

The Development of Benzimidazole-Based Clickable Probes for the Efficient Labeling of Cellular Protein Arginine Deiminases (PADs).

Paul R Thompson, P. Thompson, E. Weerapana, 2018, ACS chemical biology.

Chemical Proteomic Platform To Identify Citrullinated Proteins

P. Thompson, J. Sokolove, Daniel M. Lewallen, 2015, ACS chemical biology.

Engineering enhanced cellobiohydrolase activity

J. O. Baker, M. Himmel, M. Crowley, 2018, Nature Communications.

Using unnatural amino acid mutagenesis to probe the regulation of PRMT1.

Graham M. West, P. Schultz, Heather L. Rust, 2014, ACS Chemical Biology.

Survey of the anaerobic metabolism of various laboratory wild-type Chlamydomonas reinhardtii strains

M. Ghirardi, S. Smolinski, V. Subramanian, 2018, Algal Research.

Profiling Chlamydomonas metabolism under dark, anoxic H2-producing conditions using a combined proteomic, transcriptomic, and metabolomic approach.

M. Posewitz, M. Seibert, A. Grossman, 2014, Journal of proteome research.

A multi-plex protein expression system for production of complex enzyme formulations in Trichoderma reesei

M. Himmel, V. Subramanian, S. Decker, 2022, Journal of industrial microbiology & biotechnology.

Abrogation of collagen-induced arthritis by a peptidyl arginine deiminase inhibitor is associated with modulation of T cell-mediated immune responses

N. L. La Thangue, R. Fischer, P. Thompson, 2016, Scientific Reports.

Pluripotency: citrullination unravels stem cells.

P. Thompson, V. Subramanian, D. J. Slade, 2014, Nature chemical biology.

Perspectives on biorefineries in microbial production of fuels and chemicals

V. Subramanian, R. Brunecky, S. Decker, 2023, Frontiers in Industrial Microbiology.

Activity-Based Profiling Reveals a Regulatory Link between Oxidative Stress and Protein Arginine Phosphorylation.

D. Kojetin, P. Thompson, V. Subramanian, 2016, Cell chemical biology.

Peptidylarginine Deiminase Inhibition Reduces Vascular Damage and Modulates Innate Immune Responses in Murine Models of Atherosclerosis

P. Thompson, J. Knight, W. Luo, 2014, Circulation research.

Peptidylarginine deiminase inhibition is immunomodulatory and vasculoprotective in murine lupus.

J. Hodgin, P. Thompson, J. Knight, 2013, The Journal of clinical investigation.

The Development of Benzimidazole-Based Clickable Probes for the Efficient Labeling of Cellular Protein Arginine Deiminases (PADs).

P. Thompson, E. Weerapana, V. Subramanian, 2018, ACS chemical biology.

Altered Fermentative Metabolism in Chlamydomonas reinhardtii Mutants Lacking Pyruvate Formate Lyase and Both Pyruvate Formate Lyase and Alcohol Dehydrogenase[W]

M. Posewitz, M. Seibert, A. Grossman, 2012, Plant Cell.

A Mutant in the ADH 1 Gene of Chlamydomonas reinhardtii Elicits Metabolic Restructuring during Anaerobiosis 1 [ W ]

M. Posewitz, M. Seibert, A. Grossman, 2012 .

Using unnatural amino acid mutagenesis to probe the regulation of PRMT1.

Graham M. West, P. Schultz, Heather L. Rust, 2014, ACS chemical biology.

Strychnos potatorum Linn Seed Extract Enhances Lysosomal Membrane Stability and Collagen Formation in Freunds Complete Adjuvant-Induced Arthritic Rats

V. Subramanian, Senthamil Selvan Perumal, S. Ekambaram, 2011 .

Heterologous expression of formate dehydrogenase enables photoformatotrophy in the emerging model microalga, Picochlorum renovo

M. Guarnieri, V. Subramanian, B. Wachter, 2023, Frontiers in bioengineering and biotechnology.

Seeing citrulline: development of a phenylglyoxal-based probe to visualize protein citrullination.

A. Chumanevich, L. Hofseth, P. Thompson, 2012, Journal of the American Chemical Society.