B. Tully

发表

Time-series transcriptomics from cold, oxic subseafloor crustal fluids reveals a motile, mixotrophic microbial community

L. Seyler, E. Trembath-Reichert, B. Tully, 2020, The ISME Journal.

Time-series transcriptomics from cold, oxic subseafloor crustal fluids reveals a motile, mixotrophic microbial community

L. Seyler, E. Trembath-Reichert, B. Tully, 2020, The ISME journal.

Descriptor : The reconstruction of 2 , 631 draft metagenome-assembled genomes from the global oceans

Elaina D. Graham, J. Heidelberg, B. Tully, 2018 .

The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans

J. Heidelberg, B. Tully, E. Graham, 2017, bioRxiv.

Biases in genome reconstruction from metagenomic data

W. Nelson, B. Tully, J. Mobberley, 2020, PeerJ.

Metabolic diversity within the globally abundant Marine Group II Euryarchaea offers insight into ecological patterns

B. Tully, 2018, Nature Communications.

A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer

C. Wheat, B. Glazer, B. Tully, 2017, The ISME Journal.

A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer

C. Wheat, B. Tully, J. Huber, 2017, bioRxiv.

Genome Sequence of Hydrogenovibrio sp. Strain SC-1, a Chemolithoautotrophic Sulfur and Iron Oxidizer

K. Nealson, J. Amend, B. Tully, 2018, Genome Announcements.

Marine Dadabacteria exhibit genome streamlining and phototrophy-driven niche partitioning

B. Tully, E. Graham, 2020, The ISME journal.

Marine Dadabacteria exhibit genome streamlining and phototrophy-driven niche partitioning

Elaina D. Graham, B. Tully, E. Graham, 2020, bioRxiv.

Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton

Arianna I. Krinos, Sarah K. Hu, B. Tully, 2021, bioRxiv.

The Reconstruction of 2 , 631 Draft Metagenome-Assembled Genomes from the Global 1 Oceans 2 3

Elaina D. Graham, J. Heidelberg, B. Tully, 2017 .

Metagenome-assembled Genomes from the Mediterranean Sea : Ongoing Effort to 1 Generate Genomes from the Tara Oceans Dataset 2 3 Authors 4

Elaina D. Graham, J. Heidelberg, B. Tully, 2016 .

High transposase abundance in the deep ocean is linked to a particle-associated lifestyle

B. Tully, R. Anderson, Juntao Zhong, 2022 .

Undocumented potential for primary productivity in a globally-distributed bacterial photoautotroph

Elaina D. Graham, J. Heidelberg, B. Tully, 2017, bioRxiv.

290 Metagenome-assembled Genomes from the Mediterranean Sea: Ongoing Effort to Generate Genomes from the Tara Oceans Dataset

Elaina D. Graham, J. Heidelberg, B. Tully, 2016 .

Genome Sequence of Mariprofundus sp. Strain EBB-1, a Novel Marine Autotroph Isolated from an Iron-Sulfur Mineral

K. Nealson, J. Amend, B. Tully, 2019, Microbiology Resource Announcements.

High transposase abundance in the deep ocean is linked to a particle-associated lifestyle

B. Tully, R. Anderson, Juntao Zhong, 2022, bioRxiv.

1 A dynamic microbial community with high functional redundancy inhabits the cold , oxic 1 subseafloor aquifer 2 3

C. Wheat, B. Tully, J. Huber, 2017 .

Potential Phosphorus Uptake Mechanisms in the Deep Sedimentary Biosphere

A. Paytan, B. Tully, J. Sylvan, 2022, Frontiers in Marine Science.

Genome Sequence of Geothermobacter sp. Strain EPR-M, a Deep-Sea Hydrothermal Vent Iron Reducer

J. Amend, B. Tully, I. Pérez-Rodríguez, 2017, Genome Announcements.

BinSanity: unsupervised clustering of environmental microbial assemblies using coverage and affinity propagation

Elaina D. Graham, John F. Heidelberg, Benjamin J. Tully, 2016, bioRxiv.

A genomic catalog of Earth’s microbiomes

Vincent J. Denef, Natalia N. Ivanova, Paramvir S. Dehal, 2020, Nature Biotechnology.

Comparative genomics of planktonic Flavobacteriaceae from the Gulf of Maine using metagenomic data

Benjamin J Tully, J. Heidelberg, K. Heidelberg, 2014, Microbiome.

MetaSanity: an integrated microbial genome evaluation and annotation pipeline

Christopher J Neely, Elaina D Graham, Benjamin J Tully, 2020, Bioinform..

MetaSanity: An integrated, customizable microbial genome evaluation and annotation pipeline

Elaina D. Graham, Benjamin J. Tully, Christopher Neely, 2019, bioRxiv.

Petrobactin, a siderophore produced by Alteromonas, mediates community iron acquisition in the global ocean

C. Dupont, B. Tully, Jiwoon Park, 2021, The ISME Journal.

The high-throughput gene prediction of more than 1,700 eukaryote genomes using the software package EukMetaSanity

Sarah K. Hu, B. Tully, Harriet Alexander, 2021, bioRxiv.

Metabolic diversity within the globally abundant Marine Group II Euryarchaea offers insight into ecological patterns

B. Tully, 2018, bioRxiv.

Potential for primary productivity in a globally-distributed bacterial phototroph

Elaina D. Graham, J. Heidelberg, B. Tully, 2018, The ISME Journal.

Microbial population dynamics are dominated by stochastic forces in a low biomass subseafloor habitat

Elaina D. Graham, B. Tully, J. Huber, 2021, bioRxiv.

Estimating global variation in the maximum growth rates of eukaryotic microbes from cultures and metagenomes via codon usage patterns

Arianna I. Krinos, D. Caron, J. Fuhrman, 2021, bioRxiv.

A distinct and active bacterial community in cold oxygenated fluids circulating beneath the western flank of the Mid-Atlantic ridge

Julie A. Huber, Benjamin J. Tully, Huei-Ting Lin, 2016, Scientific Reports.

Potential for primary productivity in a globally-distributed bacterial phototroph

J. Heidelberg, B. Tully, E. Graham, 2018, The ISME Journal.

290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology

Elaina D. Graham, John F. Heidelberg, Benjamin J. Tully, 2017, bioRxiv.

Microbial Populations Are Shaped by Dispersal and Recombination in a Low Biomass Subseafloor Habitat

Elaina D. Graham, B. Tully, J. Huber, 2022, mBio.

Marine Dadabacteria exhibit genome streamlining and phototrophy-driven niche partitioning

Elaina D. Graham, B. Tully, E. Graham, 2020, The ISME Journal.

Biases in genome reconstruction from metagenomic data

W. Nelson, B. Tully, J. Mobberley, 2020, PeerJ.

De Novo Sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, Reveal a Variable Genomic Landscape

J. Banfield, E. Allen, J. Emerson, 2015, Archaea.

Nitrogen Cycling of Active Bacteria within Oligotrophic Sediment of the Mid-Atlantic Ridge Flank

P. Girguis, J. Amend, D. LaRowe, 2018 .

Microbial communities associated with ferromanganese nodules and the surrounding sediments

J. Heidelberg, B. Tully, 2013, Front. Microbiol..

Prospects for the Study of Evolution in the Deep Biosphere

W. Nelson, J. Heidelberg, C. Moyer, 2012, Front. Microbio..

Potential Mechanisms for Microbial Energy Acquisition in Oxic Deep-Sea Sediments

John F. Heidelberg, Benjamin J. Tully, J. Heidelberg, 2016, Applied and Environmental Microbiology.

Metagenomic analysis of a complex marine planktonic thaumarchaeal community from the Gulf of Maine.

W. Nelson, J. Heidelberg, B. Tully, 2012, Environmental microbiology.

NCBI’s Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements

Ryan Shean, Matthew Miller, Carl Leubsdorf, 2019, Genes.

The Bioinformatics Virtual Coordination Network: An Open-Source and Interactive Learning Environment

Arianna I. Krinos, Sarah K. Hu, Jacob A. Cram, 2021, Frontiers in Education.

The Reconstruction of 2,631 Draft Metagenome-Assembled Genomes from the Global Oceans

J. Heidelberg, B. Tully, E. Graham, 2017, bioRxiv.

Increasing transposase abundance with ocean depth correlates with a particle-associated lifestyle

B. Tully, Rika E. Anderson, Thaís Del Rosario Hernández, 2023, bioRxiv.

NCBI’s Virus Discovery Codeathon: Building “FIVE” —The Federated Index of Viral Experiments API Index

Michael Muchow, Robert A Edwards, Ward Deboutte, 2020, Viruses.

Teaching Multicultural Texts At The Secondary Level

B. Tully, 2019 .

Identification of microbial metabolic functional guilds from large genomic datasets

B. Tully, N. Levine, Sangwon Hyun, 2023, Frontiers in Microbiology.

Distributed under Creative Commons Cc-by 4.0 Binsanity: Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation

Elaina D. Graham, J. Heidelberg, B. Tully, 2022 .

Increasing transposase abundance with ocean depth correlates with a particle-associated lifestyle

B. Tully, Rika E. Anderson, Juntao Zhong, 2024, mSystems.