Alexandra Calteau

发表

MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis

C. Médigue, D. Vallenet, Z. Rouy, 2019, Nucleic Acids Res..

Azospirillum Genomes Reveal Transition of Bacteria from Aquatic to Terrestrial Environments

Jon S. Robertson, G. Hurst, A. Paterson, 2011, PLoS genetics.

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

A. Danchin, M. Touchon, E. Rocha, 2009, PLoS genetics.

Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

V. Barbe, S. Penel, D. Vallenet, 2016, bioRxiv.

Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

Matt Nolan, Jonathan A. Eisen, Edward M. Rubin, 2012, Proceedings of the National Academy of Sciences.

Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus

Claudine Médigue, Alexandra Calteau, Zoé Rouy, 2010, BMC Genomics.

Horizontal Transfer of Two Operons Coding for Hydrogenases Between Bacteria and Archaea

Guy Perrière, Manolo Gouy, Alexandra Calteau, 2005, Journal of Molecular Evolution.

Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria

C. Kerfeld, Alexandra Calteau, J. Piel, 2014, BMC Genomics.

A community resource for paired genomic and metabolomic data mining

Elizabeth I. Parkinson, Emily C. Gentry, Allegra T. Aron, 2021, Nature Chemical Biology.

The Genome Sequence of the Cyanobacterium Oscillatoria sp. PCC 6506 Reveals Several Gene Clusters Responsible for the Biosynthesis of Toxins and Secondary Metabolites

C. Médigue, Alexandra Calteau, A. Méjean, 2010, Journal of bacteriology.

A Module Located at a Chromosomal Integration Hot Spot Is Responsible for the Multidrug Resistance of a Reference Strain from Escherichia coli Clonal Group A

M. Touchon, E. Rocha, C. Médigue, 2009, Antimicrobial Agents and Chemotherapy.

From Strain Characterization to Field Authorization: Highlights on Bacillus velezensis Strain B25 Beneficial Properties for Plants and Its Activities on Phytopathogenic Fungi

D. Vallenet, P. Joly, F. Lefort, 2021, Microorganisms.

Rearranged Biosynthetic Gene Cluster and Synthesis of Hassallidin E in Planktothrix serta PCC 8927.

N. Sassoon, S. Bay, Alexandra Calteau, 2017, ACS chemical biology.

Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence

Claudine Médigue, Alexandra Calteau, Olivier Pruvost, 2010, BMC Genomics.

Populations, not clones, are the unit of vibrio pathogenesis in naturally infected oysters

D. Goudenège, Alexandra Calteau, B. Petton, 2014, The ISME Journal.

Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria

C. Médigue, D. Vallenet, G. Michel, 2017, Nature Communications.

Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria

C. Médigue, D. Vallenet, G. Michel, 2017, Nature Communications.

Genomic Characterization of Flavobacterium psychrophilum Serotypes and Development of a Multiplex PCR-Based Serotyping Scheme

I. Dalsgaard, Alexandra Calteau, P. Nicolas, 2017, Front. Microbiol..

MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

Stefan Engelen, Eugeni Belda, David Roche, 2012, Nucleic Acids Res..

MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes

Alexandre Renaux, David Roche, Claudine Médigue, 2016, Nucleic Acids Res..

A single regulatory gene is sufficient to alter Vibrio aestuarianus pathogenicity in oysters.

S. Mangenot, D. Goudenège, D. Mazel, 2015, Environmental microbiology.

Characterization of the low-copy HERV-Fc family: evidence for recent integrations in primates of elements with coding envelope genes.

T. Heidmann, L. Benit, Alexandra Calteau, 2003, Virology.

Genome mining expands the chemical diversity of the cyanobactin family to include highly modified linear peptides.

P. Permi, C. Kerfeld, Alexandra Calteau, 2013, Chemistry & biology.

Parallel Evolution of a Type IV Secretion System in Radiating Lineages of the Host-Restricted Bacterial Pathogen Bartonella

Stephan C. Schuster, Philipp Engel, Christoph Dehio, 2011, PLoS genetics.

Super-tree Approach for Studying the Phylogeny of Prokaryotes: New Results on Completely Sequenced Genomes

Guy Perrière, Vincent Daubin, Alexandra Calteau, 2004, International Conference on Computational Science.

Run-Off Replication of Host-Adaptability Genes Is Associated with Gene Transfer Agents in the Genome of Mouse-Infecting Bartonella grahamii

S. Andersson, A. Eriksson, H. Lindroos, 2009, PLoS genetics.

panRGP: a pangenome-based method to predict genomic islands and explore their diversity

Claudine Médigue, Guillaume Gautreau, Adelme Bazin, 2020, bioRxiv.

PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

Christophe Ambroise, Catherine Matias, Eduardo P. C. Rocha, 2019, bioRxiv.

A Tribute to Disorder in the Genome of the Bloom-Forming Freshwater Cyanobacterium Microcystis aeruginosa

Alexandra Calteau, Claudine Medigue, Aurélie Lajus, 2013, PloS one.

panModule: detecting conserved modules in the variable regions of a pangenome graph

C. Médigue, D. Vallenet, Alexandra Calteau, 2021, bioRxiv.

Mutation rate and genome reduction in endosymbiotic and free-living bacteria

O. Tenaillon, Alexandra Calteau, G. Marais, 2008, Genetica.

Horizontal Gene Transfer Regulation in Bacteria as a “Spandrel” of DNA Repair Mechanisms

T. Vogel, G. Perrière, S. Fall, 2007, PloS one.

A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal

Aaron Marc Saunders, J. Nielsen, K. Nielsen, 2012, The ISME Journal.

Insights into the Planktothrix genus: Genomic and metabolic comparison of benthic and planktic strains

R. Ueoka, V. Barbe, J. Humbert, 2017, Scientific Reports.

MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data

David Roche, Claudine Médigue, Guillaume Gautreau, 2017, Briefings Bioinform..

A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century

A. Danchin, C. Médigue, C. Harwood, 2023, Microbial biotechnology.

Physiological and evolutionary implications of tetrameric photosystem I in cyanobacteria

M. Li, J. Whitelegge, E. Boekema, 2019, Nature Plants.

Genome Sequence of Radiation-Resistant Modestobacter marinus Strain BC501, a Representative Actinobacterium That Thrives on Calcareous Stone Surfaces

Claudine Médigue, Philippe Normand, Alexandra Calteau, 2012, Journal of bacteriology.

Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits

C. Médigue, E. Krin, S. Mangenot, 2013, The ISME Journal.

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics

D. Paslier, J. Weissenbach, C. Médigue, 2011, The ISME Journal.

A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle

D. Vaulot, F. Partensky, Alexandra Calteau, 2018, Scientific Reports.

panRGP: a pangenome-based method to predict genomic islands and explore their diversity.

C. Médigue, D. Vallenet, Alexandra Calteau, 2020, Bioinformatics.

A Tribute to Disorder in the Genome of the Bloom- Forming Freshwater Cyanobacterium Microcystis

S. Oztas, V. Castelli, Alexandra Calteau, 2013 .