Paulo Maia

发表

A generic multi-criterion approach for mutant strain optimization

Miguel Rocha, Paulo Maia, Isabel Rocha, 2012 .

A Study on the Robustness of Strain Optimization Algorithms

Miguel Rocha, Paulo Maia, Paulo Vilaça, 2011, PACBB.

Natural computation meta-heuristics for the in silico optimization of microbial strains

Miguel Rocha, Eugénio C. Ferreira, Jens Nielsen, 2008, BMC Bioinformatics.

Comparison of pathway analysis and constraint-based methods for cell factory design

Miguel Rocha, Isabel Rocha, Paulo Maia, 2019, BMC Bioinformatics.

Development of pathway analysis based algorithms for strain optimization

Miguel Rocha, Paulo Maia, Isabel Rocha, 2016 .

Turnover Dependent Phenotypic Simulation: A Quantitative Constraint-Based Simulation Method That Accommodates All Main Strain Design Strategies.

Isabel Rocha, Paulo Maia, Paulo Vilaça, 2015, ACS synthetic biology.

Evaluating evolutionary multiobjective algorithms for the in silico optimization of mutant strains

Miguel Rocha, Eugénio C. Ferreira, Paulo Maia, 2008, 2008 8th IEEE International Conference on BioInformatics and BioEngineering.

Identification of robust strain designs via tandem pFBA/LMOMA phenotype prediction

Miguel Rocha, Paulo Maia, Isabel Rocha, 2017, GECCO.

Evolutionary multiobjective algorithms for in silico metabolic engineering

Miguel Rocha, Eugénio C. Ferreira, Paulo Maia, 2008 .

Evaluating Simulated Annealing Algorithms in the Optimization of Bacterial Strains

Miguel Rocha, Eugénio C. Ferreira, Paulo Maia, 2007, EPIA Workshops.

Comparing knockout strategies from in silico rational strain design tools

Miguel Rocha, Isabel Rocha, Paulo Maia, 2015 .

Development of a Framework for Metabolic Pathway Analysis-Driven Strain Optimization Methods

Miguel Rocha, Isabel Rocha, Paulo Maia, 2017, Interdisciplinary Sciences: Computational Life Sciences.

Implementing Metaheuristic Optimization Algorithms with JECoLi

Miguel Rocha, Paulo Maia, Pedro Evangelista, 2009, 2009 Ninth International Conference on Intelligent Systems Design and Applications.

A Software Platform for Evolutionary Computation with Pluggable Parallelism and Quality Assurance

Miguel Rocha, Paulo Maia, Emanuel J. V. Gonçalves, 2011, EANN/AIAI.

An integrated framework for strain optimization

Miguel Rocha, Paulo Maia, Isabel Rocha, 2013, 2013 IEEE Congress on Evolutionary Computation.

CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data

Miguel Rocha, Paulo Maia, Isabel Rocha, 2014, BMC Systems Biology.

Savings in internal logistics using a RFID-based software system in a lean context

Paulo Maia, Paulo Afonso, João M. Fernandes, 2017 .

Multi-criterion approaches for the in silico optimization of mutant microorganisms

Miguel Rocha, Eugénio C. Ferreira, Paulo Maia, 2009 .

Memote: A community driven effort towards a standardized genome-scale metabolic model test suite

Steffen Klamt, Anne Richelle, Hyun Uk Kim, 2018, bioRxiv.

Metaheuristics for Strain Optimization Using Transcriptional Information Enriched Metabolic Models

Miguel Rocha, Paulo Maia, Isabel Rocha, 2010, EvoBIO.

Analyzing and Designing Cell Factories with OptFlux.

Miguel Rocha, Isabel Rocha, Paulo Maia, 2018, Methods in molecular biology.

On the Fly Reporting of Human Body Movement based on Kinect v2

Paulo Maia, João Paulo da Silva Cunha, Hugo Miguel Pereira Choupina, 2018, 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

Metaheuristics for strain optimization using transcriptional information enriched metabolic models

Miguel Rocha, Paulo Maia, Isabel Rocha, 2010 .

Enhancing Elementary Flux Modes Analysis Using Filtering Techniques in an Integrated Environment

Miguel Rocha, Paulo Maia, Isabel Rocha, 2010, IWPACBB.

An integrated computational environment for elementary modes analysis of biochemical networks

Miguel Rocha, Paulo Maia, Isabel Rocha, 2012, Int. J. Data Min. Bioinform..

OPTFERM - a computational platform for the optimization of fermentation processes

Miguel Rocha, Paulo Maia, Isabel Rocha, 2009 .

Non-involutive twist-structures

Paulo Maia, Umberto Rivieccio, Achim Jung, 2020, Log. J. IGPL.

The @Note biomedical text mining workbench

Miguel Rocha, Eugénio C. Ferreira, Paulo Maia, 2008 .

On the effects of phenotype prediction methods over strain design algorithms. A multi-objective approach

Miguel Rocha, Paulo Maia, Isabel Rocha, 2014 .

A Review of Dynamic Modeling Approaches and Their Application in Computational Strain Optimization for Metabolic Engineering

Miguel Rocha, Paulo Maia, Osvaldo D. Kim, 2018, Front. Microbiol..

Development of an Integrated Framework for Minimal Cut Set Enumeration in Constraint-Based Models

Miguel Rocha, Paulo Maia, Isabel Rocha, 2016, PACBB.

OptFlux: an open-source software platform for in silico metabolic engineering

Miguel Rocha, Eugénio C. Ferreira, Jens Nielsen, 2010, BMC Systems Biology.

OptFlux: a software for metabolic engineering

Jens Nielsen, Paulo Maia, Isabel Rocha, 2009 .

Visualizing omics data in the OptFlux workbench

Miguel Rocha, Paulo Maia, Isabel Rocha, 2015 .

Using Scrum Together with UML Models: A Collaborative University-Industry R&D Software Project

Pedro V. Silva, João M. Fernandes, Paulo Maia, 2016, ICCSA.