Katharina Jahn

发表

Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors

Jack Kuipers, Niko Beerenwinkel, Benjamin J. Raphael, 2017, Genome research.

Advances in understanding tumour evolution through single-cell sequencing*

N. Beerenwinkel, J. Kuipers, Katharina Jahn, 2017, Biochimica et biophysica acta. Reviews on cancer.

Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

Jack Kuipers, Niko Beerenwinkel, Salem Malikic, 2019, Nature Communications.

Eleven grand challenges in single-cell data science

Alexey M. Kozlov, Benjamin J. Raphael, Kieran R. Campbell, 2020, Genome Biology.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

Jayarama, Priyono, Corinne Da Silva, 2014, Science.

A statistical test on single-cell data reveals widespread recurrent mutations in tumor evolution

Benjamin J. Raphael, N. Beerenwinkel, J. Kuipers, 2016, bioRxiv.

Computational Analysis of DNA and RNA Sequencing Data Obtained from Liquid Biopsies.

N. Beerenwinkel, F. Castro-Giner, N. Aceto, 2020, Recent results in cancer research. Fortschritte der Krebsforschung. Progres dans les recherches sur le cancer.

Computational Model Reveals a Stochastic Mechanism behind Germinal Center Clonal Bursts

N. Beerenwinkel, U. Klein, J. Kuipers, 2020, Cells.

Joint copy number and mutation phylogeny reconstruction from single-cell amplicon sequencing data

N. Beerenwinkel, Koichi Takahashi, J. Kuipers, 2022, bioRxiv.

Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC

N. Beerenwinkel, C. Beisel, T. Stadler, 2022, Nature Microbiology.

Detection and surveillance of SARS-CoV-2 genomic variants in wastewater

N. Beerenwinkel, C. Beisel, T. Stadler, 2021 .

Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

Jack Kuipers, Niko Beerenwinkel, Salem Malikic, 2017, Nature Communications.

Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland

Timothy M. Sykes, E. Dermitzakis, I. Xenarios, 2021, Epidemics.

Eleven grand challenges in single-cell data science

Alexey M. Kozlov, Benjamin J. Raphael, Kieran R. Campbell, 2020, Genome Biology.

Single-cell mutation identification via phylogenetic inference

N. Beerenwinkel, J. Kuipers, Katharina Jahn, 2018, Nature Communications.

Tree inference for single-cell data

N. Beerenwinkel, J. Kuipers, Katharina Jahn, 2016, bioRxiv.

Establishing standardized immune phenotyping of metastatic melanoma by digital pathology

Vipin T. Sreedharan, Nora C. Toussaint, Christian P. Kunze, 2021, Laboratory Investigation.

SCIΦ: Single-cell mutation identification via phylogenetic inference

N. Beerenwinkel, J. Kuipers, Katharina Jahn, 2018, bioRxiv.

Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics

P. A. Futreal, Erika J. Thompson, N. Navin, 2020, Nature Communications.

A consolidation algorithm for genomes fractionated after higher order polyploidization

David Sankoff, Chunfang Zheng, Katharina Jahn, 2012, BMC Bioinformatics.

Single-cell copy number calling and event history reconstruction

Jack Kuipers, Niko Beerenwinkel, Katharina Jahn, 2020, bioRxiv.

Microbe-host interplay in atopic dermatitis and psoriasis

J. Kere, D. Greco, S. Katayama, 2019, Nature Communications.

Finding approximate gene clusters with Gecko 3

Jens Stoye, Katharina Jahn, Manja Marz, 2016, Nucleic acids research.

12 Grand Challenges in Single-Cell Data Science

Alexander Zelikovsky, Fabian J. Theis, Marcel J. T. Reinders, 2019, PeerJ Prepr..

Computation of Median Gene Clusters

Jens Stoye, Katharina Jahn, Sebastian Böcker, 2008, RECOMB.

Statistical tests for intra-tumour clonal co-occurrence and exclusivity

P. A. Futreal, H. Moch, N. Beerenwinkel, 2021, PLoS Comput. Biol..

Within-patient genetic diversity of SARS-CoV-2

Fritz M. Bayer, N. Beerenwinkel, C. Beisel, 2020 .

Support vector machines for separation of mixed plant?Cpathogen EST collections based on codon usage

Igor V. Tetko, Caroline C. Friedel, Katharina Jahn, 2005, Bioinform..

A statistical test for clonal exclusivity in tumour evolution

H. Moch, N. Beerenwinkel, P. Schraml, 2021, bioRxiv.

Statistics for approximate gene clusters

Jens Stoye, Katharina Jahn, Sebastian Böcker, 2013, BMC Bioinformatics.

Efficient Computation of Approximate Gene Clusters Based on Reference Occurrences

Katharina Jahn, Katharina Jahn, 2010, RECOMB-CG.

ROS Induction Targets Persister Cancer Cells with Low Metabolic Activity in NRAS-Mutated Melanoma.

Vipin T. Sreedharan, Nora C. Toussaint, Christian P. Kunze, 2023, Cancer research.

Single-cell mutation identification via phylogenetic inference

Jack Kuipers, Niko Beerenwinkel, Jochen Singer, 2018, Nature Communications.

Mathematical and Computational Oncology: First International Symposium, ISMCO 2019, Lake Tahoe, NV, USA, October 14–16, 2019, Proceedings

Ken Chen, George Bebis, Takis Benos, 2019, ISMCO.

Optimizing gSpan for Molecular Datasets

Katharina Jahn, Stefan Kramer, S. Kramer, 2005 .

Multiple genome comparison based on overlap regions of pairwise local alignments

Jens Stoye, Katharina Jahn, Henner Sudek, 2012, BMC Bioinformatics.

The Potential of Family-Free Genome Comparison

Daniel Doerr, Jens Stoye, Cédric Chauve, 2013, Models and Algorithms for Genome Evolution.

Tree inference for single-cell data

N. Beerenwinkel, J. Kuipers, Katharina Jahn, 2016, Genome Biology.

COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data

N. Beerenwinkel, Koichi Takahashi, J. Kuipers, 2023, Nature communications.

Joint copy number and mutation phylogeny reconstruction from single-cell amplicon sequencing data

N. Beerenwinkel, Koichi Takahashi, J. Kuipers, 2022, bioRxiv.

Advances in understanding tumour evolution through single-cell sequencing*

N. Beerenwinkel, J. Kuipers, Katharina Jahn, 2017, Biochimica et biophysica acta. Reviews on cancer.

The Bourque distances for mutation trees of cancers

Niko Beerenwinkel, Katharina Jahn, Louxin Zhang, 2020, Algorithms for Molecular Biology.

Eleven grand challenges in single-cell data science

Alexey M. Kozlov, Benjamin J. Raphael, Kieran R. Campbell, 2020, Genome Biology.

Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity

N. Beerenwinkel, R. Majeti, Katharina Jahn, 2023, Research square.

Eleven grand challenges in single-cell data science

Alexey M. Kozlov, Benjamin J. Raphael, Kieran R. Campbell, 2020, Genome Biology.