Farhia Kabeer

发表

Resource: Scalable whole genome sequencing of 40,000 single cells identifies stochastic aneuploidies, genome replication states and clonal repertoires

Richard A. Moore, C. Steidl, M. Marra, 2018, bioRxiv.

Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses

Kieran R. Campbell, Richard A. Moore, Allen W. Zhang, 2019, Genome Biology.

Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses

Kieran R. Campbell, Richard A. Moore, Allen W. Zhang, 2019, bioRxiv.

Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing

Richard A. Moore, Khanh N. Dinh, S. Tavaré, 2019, Cell.

clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers

Kieran R. Campbell, A. Bouchard-Côté, S. Shah, 2018, bioRxiv.

clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers

Kieran R. Campbell, A. Bouchard-Côté, S. Shah, 2019, Genome Biology.

Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data

Richard A. Moore, Mirela Andronescu, M. Hirst, 2018, bioRxiv.

An evolving cancer instigates clonally unrelated neighboring cells to form distant metastases

T. Lenaerts, L. Gaboury, K. Podsypanina, 2016, bioRxiv.

Single-cell genomic variation induced by mutational processes in cancer

Allen W. Zhang, Nicole Rusk, A. McPherson, 2022, Nature.

Cancer phylogenetic tree inference at scale from 1000s of single cell genomes

Kieran R. Campbell, Marc J. Williams, Mirela Andronescu, 2020, bioRxiv.

CX-5461 is a DNA G-quadruplex stabilizer with selective lethality in BRCA1/2 deficient tumours

Jian Xian, Anni Zhang, Carlos Caldas, 2017, Nature Communications.

Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses

Kieran R. Campbell, Allen W. Zhang, S. Shah, 2019, Genome Biology.

GeneVector: Identification of transcriptional programs using dense vector representations defined by mutual information

Nicole Rusk, A. McPherson, N. Ceglia, 2023, bioRxiv.

Clonal fitness inferred from time-series modelling of single-cell cancer genomes

Kieran R. Campbell, Marc J. Williams, Richard A. Moore, 2021, Nature.

clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers

Kieran R. Campbell, A. Bouchard-Côté, S. Shah, 2019, Genome Biology.

Methods to Study Metastasis in Genetically Modified Mice.

K. Podsypanina, Farhia Kabeer, L. Beverly, 2016, Cold Spring Harbor protocols.

Evolutionary tracking of cancer haplotypes at single-cell resolution

Marc J. Williams, Nicole Rusk, S. Shah, 2021, bioRxiv.

The impact of mutational processes on structural genomic plasticity in cancer cells

Marc J. Williams, Richard A. Moore, Allen W. Zhang, 2021, bioRxiv.

Single cell fitness landscapes induced by genetic and pharmacologic perturbations in cancer

Kieran R. Campbell, Marc J. Williams, Richard A. Moore, 2020, bioRxiv.

Cancer phylogenetic tree inference at scale from 1000s of single cell genomes

Kieran R. Campbell, Marc J. Williams, Mirela Andronescu, 2020, bioRxiv.

Cancer phylogenetic tree inference at scale from 1000s of single cell genomes

Kieran R. Campbell, Marc J. Williams, Mirela Andronescu, 2020, bioRxiv.

clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers

Kieran R. Campbell, A. Bouchard-Côté, A. McPherson, 2018, bioRxiv.

Identification of transcriptional programs using dense vector representations defined by mutual information with GeneVector

Nicole Rusk, A. McPherson, B. Greenbaum, 2023, Nature Communications.