S. Kosugi

发表

Comprehensive evaluation of structural variation detection algorithms for whole genome sequencing

Y. Kamatani, M. Kubo, Y. Momozawa, 2019, Genome Biology.

Genome sequencing reveals agronomically important loci in rice using MutMap

Satoshi Natsume, Hiroki Takagi, Hideki Innan, 2012, Nature Biotechnology.

Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements

R. Terauchi, Kentaroh Yoshida, S. Kamoun, 2016, BMC Genomics.

Six Classes of Nuclear Localization Signals Specific to Different Binding Grooves of Importin α*

M. Tomita, H. Takashima, E. Miyamoto-Sato, 2009, Journal of Biological Chemistry.

Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs

M. Tomita, H. Yanagawa, S. Kosugi, 2009, Proceedings of the National Academy of Sciences.

Nuclear Export Signal Consensus Sequences Defined Using a Localization‐Based Yeast Selection System

M. Tomita, H. Yanagawa, S. Kosugi, 2008, Traffic.

Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species

S. Kuhara, S. Tabata, S. Isobe, 2013, DNA research : an international journal for rapid publication of reports on genes and genomes.

An improved assay for β-glucuronidase in transformed cells: methanol almost completely suppresses a putative endogenous β-glucuronidase activity.

Y. Arai, S. Kosugi, Y. Ohashi, 1990 .

Sequence Analysis of the Genome of Carnation (Dianthus caryophyllus L.)

Y. Ozeki, K. Ichimura, S. Tabata, 2013, DNA research : an international journal for rapid publication of reports on genes and genomes.

Cloning and DNA-binding properties of a tobacco Ethylene-Insensitive3 (EIN3) homolog.

S. Kosugi, Y. Ohashi, Yuko Ohashi, 2000, Nucleic acids research.

Involvement of two rice ETHYLENE INSENSITIVE3-LIKE genes in wound signaling

H. Yoshida, E. Uchida, H. Matsui, 2009, Molecular Genetics and Genomics.

Sequencing and comparative analyses of the genomes of zoysiagrasses

Hideki Hirakawa, Akiko Watanabe, Katsuya Shimizu, 2016, DNA research : an international journal for rapid publication of reports on genes and genomes.

tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

Jeremy R. B. Newman, A. Conesa, Sonia Tarazona, 2020, Genome Biology.

The promoter of Milk vetch dwarf virus component 8 confers effective gene expression in both dicot and monocot plants

I. Mitsuhara, S. Kosugi, S. Seo, 2005, Plant Cell Reports.

Constitutive E2F Expression in Tobacco Plants Exhibits Altered Cell Cycle Control and Morphological Change in a Cell Type-Specific Manner

S. Kosugi, Y. Ohashi, 2003, Plant Physiology.

Interaction of the Arabidopsis E2F and DP Proteins Confers Their Concomitant Nuclear Translocation and Transactivation

S. Kosugi, Y. Ohashi, 2002, Plant Physiology.

Two of three promoter elements identified in a rice gene for proliferating cell nuclear antigen are essential for meristematic tissue-specific expression.

S. Kosugi, Y. Ohashi, I. Suzuka, 1995, The Plant journal : for cell and molecular biology.

A novel PAK3 pathogenic variant identified in two siblings from a Japanese family with X-linked intellectual disability: case report and review of the literature

Y. Kamatani, M. Kubo, Y. Momozawa, 2019, Cold Spring Harbor molecular case studies.

A novel intragenic deletion in OPHN1 in a Japanese patient with Dandy-Walker malformation

Y. Kamatani, M. Kubo, Y. Momozawa, 2018, Human Genome Variation.

Coval: Improving Alignment Quality and Variant Calling Accuracy for Next-Generation Sequencing Data

R. Terauchi, D. MacLean, Kentaroh Yoshida, 2013, PloS one.

Highly conserved structure of proliferating cell nuclear antigen (DNA polymerase delta auxiliary protein) gene in plants.

S. Kosugi, S. Hata, M. Matsuoka, 1991, European journal of biochemistry.

tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

Jeremy R. B. Newman, A. Conesa, Sonia Tarazona, 2019, bioRxiv.

Transcriptional activation of tobacco E2F is repressed by co-transfection with the retinoblastoma-related protein: cyclin D expression overcomes this repressor activity

J. Murray, Masaki Ito, E. Kondorosi, 2004, Plant Molecular Biology.

E2Ls, E2F-like Repressors of Arabidopsis That Bind to E2F Sites in a Monomeric Form*

S. Kosugi, Y. Ohashi, 2002, The Journal of Biological Chemistry.

Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs (Proceedings of the National Academy of Sciences of the United States of America (2009) 106, (10171-10176) DOI: 10.1073/pnas.0900604106)

M. Tomita, H. Yanagawa, S. Kosugi, 2009 .

Upstream sequences of rice proliferating cell nuclear antigen (PCNA) gene mediate expression of PCNA-GUS chimeric gene in meristems of transgenic tobacco plants.

Y. Arai, S. Kosugi, Y. Ohashi, 1991, Nucleic acids research.

Mutation in OsLMS, a gene encoding a protein with two double-stranded RNA binding motifs, causes lesion mimic phenotype and early senescence in rice (Oryza sativa L.).

S. Sharma, M. Yano, R. Terauchi, 2012, Genes & genetic systems.

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations.

R. Terauchi, H. Innan, S. Takuno, 2013, The Plant journal : for cell and molecular biology.

Endogenization and excision of human herpesvirus 6 in human genomes

Y. Kamatani, K. Matsuda, M. Kubo, 2019, bioRxiv.

DNA binding and dimerization specificity and potential targets for the TCP protein family.

Yuko Ohashi, Shunichi Kosugi, S. Kosugi, 2002, The Plant journal : for cell and molecular biology.

Whole genome sequencing of 45 Japanese patients with intellectual disability

Y. Kamatani, M. Kubo, Y. Momozawa, 2021, American journal of medical genetics. Part A.

Comprehensive evaluation of structural variation detection algorithms for whole genome sequencing

Y. Kamatani, M. Kubo, Y. Momozawa, 2019, Genome Biology.

Nuclear localization signal in a cancer-related transcriptional regulator protein NAC1.

T. Urano, R. Maruyama, S. Kosugi, 2012, Carcinogenesis.

PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene.

S. Kosugi, Y. Ohashi, 1997, The Plant cell.

MutMap accelerates breeding of a salt-tolerant rice cultivar

Hiroki Yaegashi, Satoshi Natsume, Hiroki Takagi, 2015, Nature Biotechnology.

E2F sites that can interact with E2F proteins cloned from rice are required for meristematic tissue-specific expression of rice and tobacco proliferating cell nuclear antigen promoters.

S. Kosugi, Y. Ohashi, 2002, The Plant journal : for cell and molecular biology.

MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice

H. Matsumura, R. Terauchi, Kentaroh Yoshida, 2013, PloS one.

Prevalence and Spectrum of Pathogenic Germline Variants in Japanese Patients With Early-Onset Colorectal, Breast, and Prostate Cancer

Y. Kamatani, K. Matsuda, M. Kubo, 2020 .

GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments

Hideki Hirakawa, Satoshi Tabata, Shunichi Kosugi, 2015, Bioinform..

A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly

T. Itoh, S. Sugano, Yutaka Suzuki, 2015, Nature Genetics.

QTL Map Meets Population Genomics: An Application to Rice

R. Terauchi, H. Innan, Jeffrey A. Fawcett, 2013, PloS one.

Genome features of common vetch ( Vicia sativa ) in natural habitats

A. Toyoda, S. Isobe, H. Hirakawa, 2021, Plant direct.

Whole genome sequencing and future breeding of rice

H. Matsumura, R. Terauchi, Kentaroh Yoshida, 2012, Journal of Plant Biochemistry and Biotechnology.

Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa)

Masaru Tomita, Kenichi Higo, Shoshi Kikuchi, 2005, Bioinform..

involved in tissue-specific transcription in rice (Oryza sativa)

M. Tomita, J. Kawai, Piero Carninci, 2005 .

NESmapper: Accurate Prediction of Leucine-Rich Nuclear Export Signals Using Activity-Based Profiles

Satoshi Tabata, Hiroshi Yanagawa, Shunichi Kosugi, 2014, PLoS Comput. Biol..

Design of peptide inhibitors for the importin alpha/beta nuclear import pathway by activity-based profiling.

M. Tomita, H. Yanagawa, S. Kosugi, 2008, Chemistry & biology.

Involvement of EIN3 homologues in basic PR gene expression and flower development in tobacco plants.

I. Mitsuhara, S. Kosugi, S. Seo, 2007, Journal of experimental botany.

Detection of trait-associated structural variations using short-read sequencing

Y. Kamatani, Y. Momozawa, C. Terao, 2023, Cell genomics.

An E2F-Regulated Reporter Construct is Transcriptionally Activated Following the Transient Expression of Cyclin D in Plants.

Masaki Ito, S. Kosugi, A. Shinmyō, 2004 .

Variant spectrum of von Hippel–Lindau disease and its genomic heterogeneity in Japan

Todd A. Johnson, K. Tamura, Y. Momozawa, 2023, Human molecular genetics.

Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa)

M. Tomita, J. Kawai, Piero Carninci, 2005, Bioinform..

Comprehensive evaluation of structural variation detection algorithms for whole genome sequencing

Y. Kamatani, Y. Momozawa, C. Terao, 2019, Genome Biology.

Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa)

M. Tomita, J. Kawai, Piero Carninci, 2005, Bioinform..

Genome features of common vetch (Vicia sativa) in natural habitats

A. Toyoda, S. Isobe, H. Hirakawa, 2021, bioRxiv.

Whole Genome Sequencing to Identify Genes and QTL in Rice

H. Matsumura, R. Terauchi, H. Kanzaki, 2015 .

Correction for Kosugi et al., Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs

M. Tomita, H. Yanagawa, S. Kosugi, 2009, Proceedings of the National Academy of Sciences.