Roded Sharan

发表

Identification of protein complexes from co-immunoprecipitation data

Roded Sharan, Guy Geva, 2011, Bioinform..

Bayesian haplo-type inference via the dirichlet process

Roded Sharan, Michael I. Jordan, Eric P. Xing, 2004, ICML.

A Note on Phasing Long Genomic Regions Using Local Haplotype Predictions

Roded Sharan, Eran Halperin, Eleazar Eskin, 2006, J. Bioinform. Comput. Biol..

Discovering statistically significant biclusters in gene expression data

Roded Sharan, Ron Shamir, Amos Tanay, 2002, ISMB.

Fast and Accurate Alignment of Multiple Protein Networks

Roded Sharan, Vineet Bafna, Maxim Kalaev, 2008, RECOMB.

On the complexity of SNP block partitioning under the perfect phylogeny model

Roded Sharan, Jens Gramm, Tzvika Hartman, 2009, Discret. Math..

A Chemical-Distance-Based Test for Positive Darwinian Selection

Roded Sharan, Ron Shamir, Tal Pupko, 2001, WABI.

Flux-Based vs. Topology-Based Similarity of Metabolic Genes

Roded Sharan, Ron Y. Pinter, Eytan Ruppin, 2006, WABI.

Large-Scale Elucidation of Drug Response Pathways in Humans

Roded Sharan, Eytan Ruppin, Assaf Gottlieb, 2012, J. Comput. Biol..

Sigma: a Set-Cover-Based Inexact Graph Matching Algorithm

Roded Sharan, Alfredo Ferro, Alfredo Pulvirenti, 2010, J. Bioinform. Comput. Biol..

Approximation Algorithms for Orienting Mixed Graphs

Roded Sharan, Danny Segev, Michael Elberfeld, 2011, CPM.

Estimating Population Size via Line Graph Reconstruction

Roded Sharan, Bjarni V. Halldórsson, Dima Blokh, 2012, WABI.

Haplotyping with missing data via perfect path phylogenies

Roded Sharan, Jens Gramm, Till Nierhoff, 2007, Discret. Appl. Math..

A Robustness Analysis of Dynamic Boolean Models of Cellular Circuits

Roded Sharan, Ariel Bruner, R. Sharan, 2019, ISBRA.

Associating Genes and Protein Complexes with Disease via Network Propagation

Roded Sharan, Eytan Ruppin, Tomer Shlomi, 2010, PLoS Comput. Biol..

Towards optimally multiplexed applications of universal DNA tag systems

Roded Sharan, Benno Schwikowski, Tzvika Hartman, 2003, RECOMB '03.

Constraint-based functional similarity of metabolic genes: going beyond network topology

Roded Sharan, Ron Y. Pinter, Eytan Ruppin, 2007, Bioinform..

Genome Rearrangement with ILP

Roded Sharan, Matthias Bernt, Martin Middendorf, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Islands of Tractability for Parsimony Haplotyping

Roded Sharan, Sorin Istrail, Bjarni V. Halldórsson, 2005, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

BeWith: A Between-Within method to discover relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions

Roded Sharan, Teresa M. Przytycka, Yoo-Ah Kim, 2017, PLoS Comput. Biol..

Roded Sharan, 2011, SISAP.

PathBLAST: a tool for alignment of protein interaction networks

Roded Sharan, Trey Ideker, Brian P. Kelley, 2004, Nucleic Acids Res..

A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data

Roded Sharan, Eytan Ruppin, Nir Yosef, 2007, Bioinform..

An Algorithm for Orienting Graphs Based on Cause-Effect Pairs and Its Applications to Orienting Protein Networks

Roded Sharan, Uri Zwick, Vineet Bafna, 2008, WABI.

iPoint: an integer programming based algorithm for inferring protein subnetworks.

Roded Sharan, Nir Atias, 2013, Molecular bioSystems.

BMC Bioinformatics BioMed Central

Roded Sharan, Eytan Ruppin, Trey Ideker, 2006 .

Enhancing the Prioritization of Disease-Causing Genes through Tissue Specific Protein Interaction Networks

Roded Sharan, Eytan Ruppin, Oded Magger, 2012, PLoS Comput. Biol..

Torque: topology-free querying of protein interaction networks

Roded Sharan, Richard M. Karp, Ron Shamir, 2009, Nucleic Acids Res..

Optimally Orienting Physical Networks

Roded Sharan, Michael Elberfeld, Dana Silverbush, 2011, RECOMB.

Simultaneous Identification of Multiple Driver Pathways in Cancer

Roded Sharan, Benjamin J. Raphael, Mark D. M. Leiserson, 2013, PLoS Comput. Biol..

Analysis of Biological Networks: Protein-protein Interaction Networks - Functional Annotation

Roded Sharan, Shaul Karni, Aharon Sharim, 2006 .

The Approximability of Shortest Path-Based Graph Orientations of Protein-Protein Interaction Networks

Roded Sharan, Danny Segev, Dima Blokh, 2013, J. Comput. Biol..

ANAT 2.0: reconstructing functional protein subnetworks

Roded Sharan, Dana Silverbush, Nir Atias, 2017, BMC Bioinformatics.

Center CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis

Roded Sharan, Ron Shamir, R. Sharan, 2000, ISMB.

An optimization framework for network annotation

Roded Sharan, Sushant Patkar, 2018, Bioinform..

Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification, and Population Stratification

Roded Sharan, Ron Shamir, Gad Kimmel, 2004, INFORMS J. Comput..

Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect

Roded Sharan, Eytan Ruppin, Tomer Benyamini, 2011, PLoS Comput. Biol..

On the complexity of SNP block partitioning under the perfect phylogeny model

Roded Sharan, Jens Gramm, Tzvika Hartman, 2006, Discret. Math..

Complexity classification of some edge modification problems

Roded Sharan, Ron Shamir, Assaf Natanzon, 1999, Discret. Appl. Math..

Analysis of biological networks: Random Models

Roded Sharan, Ori Folger, Keren Yizhak, 2009 .

CLICK: A Clustering Algorithm for Gene Expression Analysis

Roded Sharan, Ron Shamir, 2000, ISMB 2000.

A New NCAlgorithm for Perfect Matching in Bipartite Cubic Graphs

Roded Sharan, Avi Wigderson, A. Wigderson, 1996, ISTCS.

Fast and Accurate Alignment of Multiple Protein Networks

Roded Sharan, Vineet Bafna, Maxim Kalaev, 2009, J. Comput. Biol..

A Fully Dynamic Algorithm for Recognizing and Representing Proper Interval Graphs

Roded Sharan, Ron Shamir, Pavol Hell, 2001, SIAM J. Comput..

Topology-Free Querying of Protein Interaction Networks

Roded Sharan, Richard M. Karp, Ron Shamir, 2009, RECOMB.

An integer programming framework for inferring disease complexes from network data

Roded Sharan, Erich E. Wanker, Arnon Mazza, 2016, Bioinform..

Global alignment of protein-protein interaction networks.

Roded Sharan, Misael Mongiovì, R. Sharan, 2013, Methods in molecular biology.

A Propagation-based Algorithm for Inferring Gene-Disease Assocations

Roded Sharan, Oron Vanunu, R. Sharan, 2008, German Conference on Bioinformatics.

Protein-protein Interaction: Network Alignment

Roded Sharan, Ofer Lavi, Lev Ferdinskoif, 2006 .

Functional Alignment of Metabolic Networks

Roded Sharan, Eytan Ruppin, Arnon Mazza, 2015, RECOMB.

WebPropagate: A Web Server for Network Propagation.

Roded Sharan, Martin Kupiec, Hadas Biran, 2018, Journal of molecular biology.

On the Approximability of Reachability-Preserving Network Orientations

Roded Sharan, Uri Zwick, Vineet Bafna, 2011, Internet Math..

Combining Drug and Gene Similarity Measures for Drug-Target Elucidation

Roded Sharan, Eytan Ruppin, Assaf Gottlieb, 2011, J. Comput. Biol..

An integer programming framework for inferring disease complexes from network data

Roded Sharan, Erich E. Wanker, Arnon Mazza, 2016, Bioinformatics.

Reconstructing Boolean Models of Signaling

Roded Sharan, Richard M. Karp, R. Karp, 2012, RECOMB.

Comparison of Protein-Protein Interaction Confidence Assignment Schemes

Roded Sharan, Eytan Ruppin, Trey Ideker, 2005, Systems Biology and Regulatory Genomics.

Cross-Species Analysis of Protein-protein Interaction Networks

Roded Sharan, Eytan Ruppin, Nir Yosef, 2008, Protein-protein Interactions and Networks.

Inference of Personalized Drug Targets via Network Propagation

Roded Sharan, Dana Silverbush, Eyal Perry, 2016, PSB.

Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks

Roded Sharan, Richard M. Karp, Trey Ideker, 2005, RECOMB.

Proceedings of the 18th Annual International Conference on Research in Computational Molecular Biology - Volume 8394

Roded Sharan, R. Sharan, 2014 .

Roded Sharan, Ruth Nussinov, Haim J. Wolfson, 2008, BMC Systems Biology.

Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data.

Roded Sharan, Ron Shamir, Amos Tanay, 2004, Proceedings of the National Academy of Sciences of the United States of America.

A Polynomial Approximation Algorithm for the Minimum Fill-In Problem

Roded Sharan, Ron Shamir, Assaf Natanzon, 2000, SIAM J. Comput..

Optimally Orienting Physical Networks

Roded Sharan, Michael Elberfeld, Dana Silverbush, 2011, RECOMB.

Simultaneous Integration of Multi-omics Data Improves the Identification of Cancer Driver Modules.

Roded Sharan, Niko Beerenwinkel, Dana Silverbush, 2019, Cell systems.

An Algorithmic Framework for Predicting Side-Effects of Drugs

Roded Sharan, Nir Atias, 2010, RECOMB.

Reconstructing chain functions in genetic networks.

Roded Sharan, Richard M. Karp, Ron Shamir, 2003 .

A motif-based framework for recognizing sequence families

Roded Sharan, Eugene W. Myers, E. Myers, 2005, ISMB.

Algorithmic approaches to clustering gene expression data

Roded Sharan, Ron Shamir, R. Sharan, 2001 .

Improved network-based identification of protein orthologs

Roded Sharan, William Stafford Noble, Nir Yosef, 2008, ECCB.

Multiplexing schemes for generic SNP genotyping assays.

Roded Sharan, Jens Gramm, Zohar Yakhini, 2005, Journal of computational biology : a journal of computational molecular cell biology.

Network orientation via shortest paths

Roded Sharan, Dana Silverbush, R. Sharan, 2014, Bioinform..

A Robustness Analysis of Dynamic Boolean Models of Cellular Circuits.

Roded Sharan, Ariel Bruner, R. Sharan, 2019, Journal of computational biology : a journal of computational molecular cell biology.

Estimating population size via line graph reconstruction

Roded Sharan, Bjarni V. Halldórsson, Dima Blokh, 2012, Algorithms for Molecular Biology.

A Dynamic Algorithm for Network Propagation

Roded Sharan, Barak Sternberg, 2018, WABI.

Identifying Blocks and Sub-populations in Noisy SNP Data

Roded Sharan, Ron Shamir, Gad Kimmel, 2003, WABI.

Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks

Roded Sharan, Richard M. Karp, Trey Ideker, 2006, J. Comput. Biol..

A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements

Roded Sharan, Vineet Bafna, Shaojie Zhang, 2006, ISMB.

Comparative analysis of protein networks

Roded Sharan, Nir Atias, R. Sharan, 2012, Commun. ACM.

A Sticky Multinomial Mixture Model of Strand-Coordinated Mutational Processes in Cancer

Roded Sharan, Teresa M. Przytycka, Mark D. M. Leiserson, 2019, RECOMB.

Topology-Free Querying of Protein Interaction Networks

Roded Sharan, Richard M. Karp, Ron Shamir, 2009, RECOMB.

A 1.5-approximation algorithm for sorting by transpositions and transreversals

Roded Sharan, Tzvika Hartman, R. Sharan, 2004, J. Comput. Syst. Sci..

A 1.5-approximation algorithm for sorting by transpositions and transreversals

Roded Sharan, Tzvika Hartman, 2005, J. Comput. Syst. Sci..

An Algorithmic Framework for Predicting Side-Effects of Drugs

Roded Sharan, Nir Atias, R. Sharan, 2010, RECOMB.

A Network-Based Method for Predicting Disease-Causing Genes

Roded Sharan, Hermona Soreq, Shaul Karni, 2009, J. Comput. Biol..

ANAT: A Tool for Constructing and Analyzing Functional Protein Networks

Roded Sharan, Eytan Ruppin, Nir Yosef, 2011, Science Signaling.

To Embed or Not: Network Embedding as a Paradigm in Computational Biology

Roded Sharan, Jure Leskovec, Marinka Zitnik, 2019, Front. Genet..

Sign Assignment Problems on Protein Networks

Roded Sharan, Shay Houri, 2012, WABI.

QNet: A Tool for Querying Protein Interaction Networks

Roded Sharan, Eytan Ruppin, Vineet Bafna, 2007, RECOMB.

Prediction of Phenotype Information from Genotype Data

Roded Sharan, Richard M. Karp, William Stafford Noble, 2010, Commun. Inf. Syst..

Using deep learning to model the hierarchical structure and function of a cell

Roded Sharan, Jianzhu Ma, Trey Ideker, 2018, Nature Methods.

Invited: From protein networks to disease mechanisms

Roded Sharan, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Gene Expression in the Rodent Brain is Associated with Its Regional Connectivity

Roded Sharan, Lior Wolf, Eytan Ruppin, 2011, PLoS Comput. Biol..

A discriminative model for identifying spatial cis-regulatory modules

Roded Sharan, Eran Segal, R. Sharan, 2004, J. Comput. Biol..

NetworkBLAST: comparative analysis of protein networks

Roded Sharan, Trey Ideker, Maxim Kalaev, 2008 .

A fully dynamic algorithm for modular decomposition and recognition of cographs

Roded Sharan, Ron Shamir, R. Sharan, 2004, Discret. Appl. Math..

A Linearized Constraint-Based Approach for Modeling Signaling Networks

Roded Sharan, Eytan Ruppin, Liram Vardi, 2012, J. Comput. Biol..

A Discriminative Model for Identifying Spatial cis-Regulatory Modules

Roded Sharan, Eran Segal, 2005, J. Comput. Biol..

Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data

Roded Sharan, Richard M. Karp, Ron Shamir, 2004, J. Comput. Biol..

QNet: A Tool for Querying Protein Interaction Networks

Roded Sharan, Eytan Ruppin, Vineet Bafna, 2007, RECOMB.

Research in Computational Molecular Biology

Roded Sharan, R. Sharan, 2014, Lecture Notes in Computer Science.

CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments

Roded Sharan, Richard M. Karp, Asa Ben-Hur, 2003, ISMB.

Reconstructing Boolean Models of Signaling

Roded Sharan, Richard M. Karp, 2012, RECOMB.

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface

Gad M. Landau, Steven Skiena, Roded Sharan, 2006, WABI 2012.

Modeling clinical and molecular covariates of mutational process activity in cancer

Roded Sharan, Mark D. M. Leiserson, Welles Robinson, 2019, Bioinform..

Hidden Markov models lead to higher resolution maps of mutation signature activity in cancer

Roded Sharan, Teresa M. Przytycka, Yoo-Ah Kim, 2018, Genome Medicine.

Analysis of SNP-Expression Association Matrices

Roded Sharan, Zohar Yakhini, Anya Tsalenko, 2005, CSB.

Cluster Graph Modification Problems

Roded Sharan, Ron Shamir, Dekel Tsur, 2002, WG.

Experimental design schemes for learning Boolean network models

Roded Sharan, Nir Atias, Michal Gershenzon, 2014, Bioinform..

A Fully Dynamic Algorithm for Recognizing and Representing Proper Interval Graphs

Roded Sharan, Ron Shamir, Pavol Hell, 1999, SIAM J. Comput..

Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer

Roded Sharan, Matthew Ruffalo, Mehmet Koyutürk, 2015, PLoS Comput. Biol..

Approximation algorithms for orienting mixed graphs

Roded Sharan, Danny Segev, Michael Elberfeld, 2011, Theor. Comput. Sci..

Biclustering Algorithms: A Survey

Roded Sharan, Ron Shamir, Amos Tanay, 2007 .

PROMO : A Method for identifying modules in protein interaction networks

Roded Sharan, Yaron Singer, Omer Tamuz, 2006 .

PRINCIPLE: a tool for associating genes with diseases via network propagation

Roded Sharan, Eytan Ruppin, Assaf Gottlieb, 2011, Bioinform..

Identification of conserved protein complexes based on a model of protein network evolution

Roded Sharan, Eitan Hirsh, R. Sharan, 2007, Bioinform..

Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data

Roded Sharan, Richard M. Karp, Ron Shamir, 2005, J. Comput. Biol..

A polynomial approximation algorithm for the minimum fill-in problem

Roded Sharan, Ron Shamir, Assaf Natanzon, 1998, STOC '98.

Approximation Algorithms and Hardness Results for Shortest Path Based Graph Orientations

Roded Sharan, Danny Segev, Dima Blokh, 2012, CPM.

Pathways of Toxicity.

Thomas Hartung, Roded Sharan, Melvin E Andersen, 2014, ALTEX.

CREME: Cis-Regulatory Module Explorer for the human genome

Roded Sharan, Asa Ben-Hur, Ivan Ovcharenko, 2004, Nucleic Acids Res..

Bayesian haplo-type inference via the dirichlet process

Roded Sharan, Michael I. Jordan, Eric P. Xing, 2004, ICML.

QPath: a method for querying pathways in a protein-protein interaction network

Roded Sharan, Eytan Ruppin, Tomer Shlomi, 2006, BMC Bioinformatics.

Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species

Roded Sharan, Eytan Ruppin, Anat Kreimer, 2010, PLoS Comput. Biol..

Analysis of SNP-expression association matrices

Roded Sharan, Zohar Yakhini, Anya Tsalenko, 2006, 2005 IEEE Computational Systems Bioinformatics Conference (CSB'05).

A network diffusion approach to inferring sample-specific function reveals functional changes associated with breast cancer

Roded Sharan, Sridhar Hannenhalli, Sushant Patkar, 2017, PLoS Comput. Biol..

Comparative Analysis of Normalization Methods for Network Propagation

Roded Sharan, Martin Kupiec, Hadas Biran, 2019, Frontiers in genetics.

Complexity classification of some edge modification problems

Roded Sharan, Ron Shamir, Assaf Natanzon, 2001, Discret. Appl. Math..

Towards Optimally Multiplexed Applications of Universal Arrays

Roded Sharan, Richard M. Karp, Benno Schwikowski, 2004, J. Comput. Biol..

Network-Free Inference of Knockout Effects in Yeast

Roded Sharan, Eytan Ruppin, Nir Yosef, 2010, PLoS Comput. Biol..

The EXPANDER Integrated Platform for Transcriptome Analysis.

Roded Sharan, Ron Shamir, Ran Elkon, 2019, Journal of molecular biology.

SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments

Roded Sharan, Eytan Ruppin, Trey Ideker, 2007, ISMB/ECCB.

Pepitope: epitope mapping from affinity-selected peptides

Roded Sharan, Eytan Ruppin, Itay Mayrose, 2007, Bioinform..

Improved Orientations of Physical Networks

Roded Sharan, Danny Segev, Iftah Gamzu, 2010, WABI.

On the Complexity of Positional Sequencing by Hybridization

Roded Sharan, Ron Shamir, Itsik Pe'er, 1999, CPM.

A systematic approach to orient the human protein–protein interaction network

Roded Sharan, Dana Silverbush, R. Sharan, 2019, Nature Communications.

Cluster graph modification problems

Roded Sharan, Ron Shamir, Dekel Tsur, 2002, Discret. Appl. Math..

Deep Unfolding for Non-negative Matrix Factorization with Application to Mutational Signature Analysis

Yonina C. Eldar, Roded Sharan, Rami Nasser, 2022, Journal of computational biology : a journal of computational molecular cell biology.

Few-shot learning creates predictive models of drug response that translate from high-throughput screens to individual patients

Roded Sharan, Jian Peng, Marc Hafner, 2021, Nature Cancer.

ANAT 3.0: a framework for elucidating functional protein subnetworks using graph-theoretic and machine learning approaches

Roded Sharan, L. F. Signorini, T. Almozlino, 2021, BMC Bioinformatics.

A Novel HMM-Based Method for Detecting Enriched Transcription Factor Binding Sites Reveals RUNX3 as a Potential Target in Pancreatic Cancer Biology

Roded Sharan, Marvin C. Gershengorn, Eytan Ruppin, 2010, PloS one.

Medical sequencing at the extremes of human body mass.

Roded Sharan, Eytan Ruppin, Nir Yosef, 2006, American journal of human genetics.

Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes

Roded Sharan, Eytan Ruppin, Elhanan Borenstein, 2006, Nucleic acids research.

Modelling the Yeast Interactome

Roded Sharan, Nataša Pržulj, R. Sharan, 2014, Scientific Reports.

Systematic condition-dependent annotation of metabolic genes.

Roded Sharan, Eytan Ruppin, Tomer Shlomi, 2007, Genome research.

Competitive and cooperative metabolic interactions in bacterial communities.

Roded Sharan, Eytan Ruppin, Shiri Freilich, 2011, Nature communications.

Rearrangements and Expansion of the Domain Content in Proteins Frequently Increase the Protein Connectivity in the Protein–Protein Interaction Network

Roded Sharan, Ruth Nussinov, Inbar Cohen-Gihon, 2009 .

Network-based interpretation of genomic variation data.

Roded Sharan, Bjarni V. Halldórsson, B. Halldórsson, 2013, Journal of molecular biology.

A genome-wide screen for essential yeast genes that affect telomere length maintenance

Roded Sharan, Eytan Ruppin, Nir Yosef, 2009, Nucleic acids research.

DEFOG: a practical scheme for deciphering families of genes.

Roded Sharan, Ron Shamir, Miriam Khen, 2002, Genomics.

Network-based approaches elucidate differences within APOBEC and clock-like signatures in breast cancer

Roded Sharan, Dorit S. Hochbaum, Teresa M. Przytycka, 2019, Genome Medicine.

MAPK signaling to the early secretory pathway revealed by kinase/phosphatase functional screening

Roded Sharan, Yael Silberberg, Marino Zerial, 2010, The Journal of cell biology.

Hidden Markov Models Lead to Higher Resolution Maps of Mutation Signature Activity in Cancer

Roded Sharan, Teresa M. Przytycka, Itay Sason, 2018 .

Comprehensive analysis of co-occurring domain sets in yeast proteins

Roded Sharan, Ruth Nussinov, Inbar Cohen-Gihon, 2007, BMC Genomics.

The large-scale organization of the bacterial network of ecological co-occurrence interactions

Roded Sharan, Eytan Ruppin, Anat Kreimer, 2010, Nucleic acids research.

Islands of tractability for parsimony haplotyping

Roded Sharan, Sorin Istrail, Bjarni V. Halldorsson, 2005 .

Increased MicroRNA Activity in Human Cancers

Roded Sharan, Eytan Ruppin, R. Sharan, 2009, PloS one.

Genetic interactions in yeast: is robustness going bust?

Roded Sharan, Eytan Ruppin, Martin Kupiec, 2007, Molecular systems biology.

TP53 cancerous mutations exhibit selection for translation efficiency.

Roded Sharan, Eytan Ruppin, Tamir Tuller, 2009, Cancer research.

Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages

Roded Sharan, Eytan Ruppin, Tamir Tuller, 2010, Nucleic acids research.

Evolution of domain promiscuity in eukaryotic genomes--a perspective from the inferred ancestral domain architectures.

Roded Sharan, Ruth Nussinov, Jessica H. Fong, 2011, Molecular bioSystems.

Islands of tractability for parsimony haplotyping.

Roded Sharan, Sorin Istrail, Bjarni V. Halldórsson, 2006, IEEE/ACM transactions on computational biology and bioinformatics.