Shuo Jiao

发表

Core Microbiota in Agricultural Soils and Their Potential Associations with Nutrient Cycling

Yahai Lu, Shuo Jiao, Yiqin Xu, 2019, mSystems.

Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.

Simon G. Coetzee, C. Carlson, Lin S. Chen, 2013, Gastroenterology.

Pleiotropic effects of genetic risk variants for other cancers on colorectal cancer risk: PAGE, GECCO and CCFR consortia

Robert J. Goodloe, C. Carlson, L. Hou, 2013, Gut.

Whole-exome sequencing identifies rare and low-frequency coding variants associated with LDL cholesterol.

Jennifer G. Robinson, Kyle J. Gaulton, Emily H Turner, 2014, American journal of human genetics.

Estimating the heritability of colorectal cancer.

John D Potter, Jian Gong, Sonja Berndt, 2014, Human molecular genetics.

The use of imputed values in the meta‐analysis of genome‐wide association studies

U. Peters, C. Hutter, L. Hsu, 2011, Genetic epidemiology.

Genome-Wide Interaction Analyses between Genetic Variants and Alcohol Consumption and Smoking for Risk of Colorectal Cancer

Stephanie A. Bien, T. Hudson, P. Schrotz-King, 2016, PLoS genetics.

Abundant fungi adapt to broader environmental gradients than rare fungi in agricultural fields

Yahai Lu, Shuo Jiao, 2020, Global change biology.

Fungi show broader environmental thresholds in wet than dry agricultural soils with distinct biogeographic patterns.

Shuo Jiao, Zhengqing Zhang, Jie Zhang, 2020, The Science of the total environment.

Genome-Wide Search for Gene-Gene Interactions in Colorectal Cancer

C. Carlson, T. Hudson, C. Ulrich, 2012, PloS one.

CYP24A1 variant modifies the association between use of oestrogen plus progestogen therapy and colorectal cancer risk

C. Carlson, T. Hudson, C. Ulrich, 2016, British Journal of Cancer.

Genome-Wide Diet-Gene Interaction Analyses for Risk of Colorectal Cancer

C. Carlson, C. Ulrich, H. Brenner, 2014, PLoS genetics.

Responses of soil bacterial community structure and function to dry–wet cycles more stable in paddy than in dryland agricultural ecosystems

Shuo Jiao, G. Wei, Stephanie N. Kivlin, 2021, Global Ecology and Biogeography.

Two cultivated legume plants reveal the enrichment process of the microbiome in the rhizocompartments

E. Wang, Shuo Jiao, G. Wei, 2017, Molecular ecology.

Agricultural Management Drive Bacterial Community Assembly in Different Compartments of Soybean Soil-Plant Continuum

Shuo Jiao, G. Wei, Jiejun Qi, 2022, Frontiers in Microbiology.

Rare Species-Driven Diversity–Ecosystem Multifunctionality Relationships are Promoted by Stochastic Community Assembly

Yahai Lu, Shuo Jiao, G. Wei, 2022, mBio.

Thermodynamic Control on Biogeography and Functioning of Rare-Biosphere Propionate Syntrophs in Paddy Field Soils

Yahai Lu, Shuo Jiao, Yidan Jin, 2020 .

Identification of Robinia pseudoacacia target proteins responsive to Mesorhizobium amphore CCNWGS0123 effector protein NopT.

Shuo Jiao, Yantao Luo, G. Wei, 2020, Journal of experimental botany.

Soil pH and temperature regulate assembly processes of abundant and rare bacterial communities in agricultural ecosystems.

Yahai Lu, Shuo Jiao, 2020, Environmental microbiology.

Local domestication of soybean leads to strong root selection and diverse filtration of root-associated bacterial communities

Shuo Jiao, Shanshan Yang, G. Wei, 2022, Plant and Soil.

Variation in soybean root-associated microbiome between lateral roots with and without nodules

Shuo Jiao, G. Wei, Jiejun Qi, 2022, Plant and Soil.

How Do N Addition Affect Soil Fungal Community Assembly: Short- Versus Long-term Effects?

W. Shen, Xiankai Lu, J. Mo, 2020 .

Correction: Corrigendum: Genome-wide association study of colorectal cancer identifies six new susceptibility loci

Christopher P. Fischer, C. Carlson, A. LaCroix, 2015, Nature Communications.

Afforestation can lower microbial diversity and functionality in deep soil layers in a semiarid region

Xiaorong Wei, P. Reich, M. Shao, 2022, Global change biology.

New Insight into the Evolution of Symbiotic Genes in Black Locust-Associated Rhizobia

E. Wang, Shuo Jiao, G. Wei, 2019, Genome biology and evolution.

Gene-environment interactions in CRC risk loci 1 Title: Characterization of gene-environment interactions for colorectal cancer susceptibility loci Authors and Affiliations:

Lin S. Chen, A. LaCroix, J. Chang-Claude, 2012 .

Increasing soil pH enhances the network interactions among bacterial and archaeal microbiota in alpine grasslands of the Tibetan Plateau

Shuo Jiao, Xiaojun Ma, W. Qi, 2019 .

Core phylotypes enhance the resistance of soil microbiome to environmental changes to maintain multifunctionality in agricultural ecosystems

Shuo Jiao, Xun Qian, G. Wei, 2022, Global change biology.

Soil Food Web Complexity Enhances the Link Between Soil Biodiversity and Ecosystem Multifunctionality in Agricultural Systems

Yahai Lu, Shuo Jiao, G. Wei, 2020 .

Material Supplementary Cited Articles E-mail Alerts Characterization of Gene–environment Interactions for Colorectal Cancer Susceptibility Loci American Association for Cancer Research

Mathieu Lemire, Steven Gallinger, Yan Liu, 2022 .

Biodiversity and biogeography of rhizobia associated with common bean (Phaseolus vulgaris L.) in Shaanxi Province.

E. Wang, Shuo Jiao, G. Wei, 2016, Systematic and applied microbiology.

The neglected role of micronutrients in predicting soil microbial structure

Shuo Jiao, G. Wei, Ziheng Peng, 2022, npj Biofilms and Microbiomes.

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

Yunfeng Yang, Yahai Lu, Shuo Jiao, 2019, The ISME Journal.

Inter-phylum negative interactions affect soil bacterial community dynamics and functions during soybean development under long-term nitrogen fertilization

Shuo Jiao, G. Wei, Chunfang Zhang, 2021, Stress Biology.

Evidence for saponin diversity-mycobiome links and conservatism of plant-fungi interaction patterns across Holarctic disjunct Panax species.

Z. Huang, Shuo Jiao, Yongzhong Chen, 2022, The Science of the total environment.

High soil pH enhances the network interactions among bacterial and archaeal microbiota in alpine grasslands of the Tibetan Plateau.

Shuo Jiao, Zhiguang Zhao, Xiaojun Ma, 2020, Environmental microbiology.

Trophic interrelationships drive the biogeography of protistan community in agricultural ecosystems

Shuo Jiao, G. Wei, Shih-Chun Chen, 2021, Soil Biology and Biochemistry.

Resilience and Assemblage of Soil Microbiome in Response to Chemical Contamination Combined with Plant Growth

Shuo Jiao, G. Wei, Weimin Chen, 2019, Applied and Environmental Microbiology.

Microbial succession in response to pollutants in batch-enrichment culture

E. Wang, Shuo Jiao, G. Wei, 2016, Scientific Reports.

Probabilistic peak calling and controlling false discovery rate estimations in transcription factor binding site mapping from ChIP-seq.

Shuo Jiao, Istvan Ladunga, Cheryl P Bailey, 2010, Methods in molecular biology.

Association of aspirin and NSAID use with risk of colorectal cancer according to genetic variants.

Mathieu Lemire, John D Potter, Conghui Qu, 2015, JAMA.

A Variational Bayes Discrete Mixture Test for Rare Variant Association

Benjamin A. Logsdon, Deborah A Nickerson, Christopher J O'Donnell, 2014, Genetic epidemiology.

Imputation of coding variants in African Americans: better performance using data from the exome sequencing project

Yun Li, Goo Jun, Dana C. Crawford, 2013, Bioinform..

Bacterial communities in oil contaminated soils: Biogeography and co-occurrence patterns

Shuo Jiao, G. Wei, Weimin Chen, 2016 .

Whole-exome imputation of sequence variants identified two novel alleles associated with adult body height in African Americans.

Mengmeng Du, Charles Kooperberg, Eric Boerwinkle, 2014, Human molecular genetics.

Novel Common Genetic Susceptibility Loci for Colorectal Cancer

Stephanie A. Bien, Elizabeth L. Barry, Aung Ko Win, 2018, Journal of the National Cancer Institute.

Genome-wide association study of colorectal cancer identifies six new susceptibility loci

Christopher P. Fischer, C. Carlson, A. LaCroix, 2015, Nature Communications.

SBERIA: Set‐Based Gene‐Environment Interaction Test for Rare and Common Variants in Complex Diseases

Mathieu Lemire, Li Hsu, Hermann Brenner, 2013, Genetic epidemiology.

Meta-analysis of new genome-wide association studies of colorectal cancer risk

C. Carlson, Lin S. Chen, A. LaCroix, 2011, Human Genetics.

Estimating the Proportion of Equivalently Expressed Genes in Microarray Data Based on Transformed Test Statistics

Shuo Jiao, Shunpu Zhang, Shuo Jiao, 2010, J. Comput. Biol..

Detecting differentially expressed genes while controlling the false discovery rate for microarray data

Shuo Jiao, Shuo Jiao, 2009 .

On correcting the overestimation of the permutation-based false discovery rate estimator

Shuo Jiao, Shunpu Zhang, Shuo Jiao, 2008, Bioinform..

Identification of a common variant with potential pleiotropic effect on risk of inflammatory bowel disease and colorectal cancer.

J. Manson, A. LaCroix, T. Hudson, 2015, Carcinogenesis.

A mixture model based approach for estimating the FDR in replicated microarray data

Shuo Jiao, Shun-Pu Zhang, Shuo Jiao, 2010 .

Contrasting patterns and drivers of soil micronutrient availability in paddy and maize fields of eastern China

Shuo Jiao, G. Wei, Ziheng Peng, 2023, Geoderma.

A Systematic Mapping Approach of 16q12.2/FTO and BMI in More Than 20,000 African Americans Narrows in on the Underlying Functional Variation: Results from the Population Architecture using Genomics and Epidemiology (PAGE) Study

Dana C. Crawford, Praveen Sethupathy, Lucia A. Hindorff, 2013, PLoS genetics.

Linking soil fungi to bacterial community assembly in arid ecosystems

Xiaorong Wei, H. Chu, Shuo Jiao, 2022, iMeta.

Aridity Threshold Induces Abrupt Change of Soil Abundant and Rare Bacterial Biogeography in Dryland Ecosystems

Xiaorong Wei, Shuo Jiao, Jie Gu, 2022, mSystems.

Linking phylogenetic niche conservatism to soil archaeal biogeography, community assembly and species coexistence

Shuo Jiao, G. Wei, Weimin Chen, 2021 .

Linking Bacterial-Fungal Relationships to Microbial Diversity and Soil Nutrient Cycling

Shuo Jiao, G. Wei, Jiejun Qi, 2021, mSystems.

Environmental filtering drives distinct continental atlases of soil archaea between dryland and wetland agricultural ecosystems

Yahai Lu, Shuo Jiao, Yiqin Xu, 2019, Microbiome.

Stochastic processes shape the biogeographic variations in core bacterial communities between aerial and belowground compartments of common bean.

Shuo Jiao, G. Wei, Yang Liu, 2020, Environmental microbiology.

Powerful Set‐Based Gene‐Environment Interaction Testing Framework for Complex Diseases

Mathieu Lemire, John D Potter, Shuo Jiao, 2015, Genetic epidemiology.

Homogeneous selection shapes rare biosphere in rhizosphere of medicinal plant

Shilin Chen, Shuo Jiao, Linlin Dong, 2021 .

Soil phosphorus determines the distinct assembly strategies for abundant and rare bacterial communities during successional reforestation

Shuo Jiao, G. Wei, Weimin Chen, 2021, Soil Ecology Letters.

Dominant role of abundant rather than rare bacterial taxa in maintaining agro-soil microbiomes under environmental disturbances.

Yahai Lu, Shuo Jiao, G. Wei, 2019, Chemosphere.

Biogeography and ecological diversity patterns of rare and abundant bacteria in oil‐contaminated soils

Shuo Jiao, G. Wei, Weimin Chen, 2017, Molecular ecology.

Distinct succession patterns of abundant and rare bacteria in temporal microcosms with pollutants.

Shuo Jiao, Yantao Luo, G. Wei, 2017, Environmental pollution.

Temporal dynamics of microbial communities in microcosms in response to pollutants

Shuo Jiao, G. Wei, Fan Yang, 2017, Molecular ecology.

Coexistence patterns of soil methanogens are closely tied to methane generation and community assembly in rice paddies

Jizhong Zhou, Yahai Lu, Yuting Liang, 2021, Microbiome.

Biogeographic distribution of bacterial, archaeal and methanogenic communities and their associations with methanogenic capacity in Chinese wetlands.

Yahai Lu, Shuo Jiao, Jie Zhang, 2018, The Science of the total environment.

Temporal dynamics of soil bacterial communities and multifunctionality are more sensitive to introduced plants than to microbial additions in a multicontaminated soil

Shuo Jiao, G. Wei, Weimin Chen, 2019, Land Degradation & Development.

Soil microbiomes with distinct assemblies through vertical soil profiles drive the cycling of multiple nutrients in reforested ecosystems

Qiaoping Li, Shuo Jiao, G. Wei, 2018, Microbiome.

Spatiotemporal Dynamics of Bacterial Taxonomic and Functional Profiles in Estuarine Intertidal Soils of China Coastal Zone

Min Liu, L. Hou, Shuo Jiao, 2021, Microbial Ecology.

Genetic variants of adiponectin and risk of colorectal cancer

E. Rimm, F. Hu, H. Brenner, 2014, International journal of cancer.

Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk

Yan Guo, Ben Zhang, Min-Ho Shin, 2014, Nature Genetics.

Rare loss of function variants in candidate genes and risk of colorectal cancer

Taylor J. Maxwell, Jennifer G. Robinson, Andrew J. Sanford, 2018, Human Genetics.

Dispersal Limitation Plays Stronger Role in the Community Assembly of Fungi Relative to Bacteria in Rhizosphere Across the Arable Area of Medicinal Plant

Shilin Chen, Shuo Jiao, Linlin Dong, 2021, Frontiers in Microbiology.

Powerful Cocktail Methods for Detecting Genome‐Wide Gene‐Environment Interaction

Carolyn Hutter, Shuo Jiao, Li Hsu, 2012, Genetic epidemiology.

Gene–Environment Interaction Involving Recently Identified Colorectal Cancer Susceptibility Loci

Mathieu Lemire, Jing Ma, Mengmeng Du, 2014, Cancer Epidemiology, Biomarkers & Prevention.

Fine-Mapping of Common Genetic Variants Associated with Colorectal Tumor Risk Identified Potential Functional Variants

Stephanie A. Bien, C. Carlson, G. Abecasis, 2014, PloS one.

Environmental filtering drives distinct continental atlases of soil archaea between dryland and wetland agricultural ecosystems

Yahai Lu, Shuo Jiao, Yiqin Xu, 2019, Microbiome.

Bacterial and fungal gut communities of Agrilus mali at different developmental stages and fed different diets

Shuo Jiao, Zhengqing Zhang, Menglou Li, 2018, Scientific Reports.

Bacterial diversity in traditional sourdough from different regions in China

Jiachao Zhang, Fuzhou Ye, Xinzhong Hu, 2018, LWT.

A simplified synthetic community rescues Astragalus mongholicus from root rot disease by activating plant-induced systemic resistance

Shuo Jiao, G. Wei, Hui Zhang, 2021, Microbiome.

Evaluation of the colorectal cancer risk conferred by rare UNC5C alleles.

S. Küry, D. Bonneau, Shuo Jiao, 2014, World journal of gastroenterology.

A Pooled Analysis of Smoking and Colorectal Cancer: Timing of Exposure and Interactions with Environmental Factors

R. Hayes, J. Potter, D. Seminara, 2012, Cancer Epidemiology, Biomarkers & Prevention.

Soil multitrophic network complexity enhances the link between biodiversity and multifunctionality in agricultural systems

Yahai Lu, Shuo Jiao, G. Wei, 2021, Global change biology.

Stochastic community assembly decreases soil fungal richness in arid ecosystems

Shuo Jiao, G. Wei, Guozhuang Zhang, 2021, Molecular ecology.

Bacterial and fungal community assembly in relation to soil nutrients and plant growth across different ecoregions of shrubland in Shaanxi, northwestern China

Shuo Jiao, Yani Zhang, Yongfu Chai, 2022, Applied Soil Ecology.

Plant growth and oil contamination alter the diversity and composition of bacterial communities in agricultural soils across China

Shuo Jiao, G. Wei, Fan Yang, 2018 .

Complexity of bacterial communities within the rhizospheres of legumes drives phenanthrene degradation

Qiaoping Li, Shuo Jiao, G. Wei, 2019, Geoderma.

Soil potassium is correlated with root secondary metabolites and root-associated core bacteria in licorice of different ages

Shuo Jiao, G. Wei, Yang Liu, 2020, Plant and Soil.

No Evidence of Gene–Calcium Interactions from Genome-Wide Analysis of Colorectal Cancer Risk

C. Carlson, T. Hudson, C. Ulrich, 2014, Cancer Epidemiology, Biomarkers & Prevention.

Ecological diversity and co-occurrence patterns of bacterial community through soil profile in response to long-term switchgrass cultivation

Shuo Jiao, Mingxiu Long, T. Hu, 2017, Scientific Reports.

The effect of cowpea (Vigna unguiculata) with root mucilage on phenanthrene (PHE) dissipation and microbial community composition using phospholipid fatty acid (PLFA) analysis and artificial neural network (ANN) modeling

D. Crowley, Shuo Jiao, G. Wei, 2015 .

Common and rare von Willebrand factor (VWF) coding variants, VWF levels, and factor VIII levels in African Americans: the NHLBI Exome Sequencing Project.

Eric Boerwinkle, Deborah A Nickerson, David Green, 2013, Blood.

Dispersal limitation relative to environmental filtering governs the vertical small‐scale assembly of soil microbiomes during restoration

Qiaoping Li, Shuo Jiao, Weimin Chen, 2019, Journal of Applied Ecology.

Stronger impacts of long-term relative to short-term exposure to carbon nanomaterials on soil bacterial communities.

S. Tao, Fan Wu, Shuo Jiao, 2020, Journal of hazardous materials.

Regulation of soil micro-foodwebs to root secondary metabolites in cultivated and wild licorice plants.

Shuo Jiao, G. Wei, Yang Liu, 2022, The Science of the total environment.

Plant domestication shapes rhizosphere microbiome assembly and metabolic functions

Shuo Jiao, Yong-Hwan Lee, G. Wei, 2023, Microbiome.

Transcriptome Response to Heavy Metals in Sinorhizobium meliloti CCNWSX0020 Reveals New Metal Resistance Determinants That Also Promote Bioremediation by Medicago lupulina in Metal-Contaminated Soil

C. Rensing, Shuo Jiao, G. Wei, 2017, Applied and Environmental Microbiology.

Core microbiota drive functional stability of soil microbiome in reforestation ecosystems

Shuo Jiao, G. Wei, Weimin Chen, 2021, Global change biology.

Carbon nanomaterials affect carbon cycle-related functions of the soil microbial community and the coupling of nutrient cycles.

Y. You, Fan Wu, Shuo Jiao, 2020, Journal of hazardous materials.

Temporal Dynamics of Rhizosphere Communities Across the Life Cycle of Panax notoginseng

Shilin Chen, J. Qian, Shuo Jiao, 2022, Frontiers in Microbiology.

Neighboring Plant Community Attributes Drive Rhizobiome Assemblages of a Focal Plant in a Kobresia Meadow

Shuo Jiao, Yanjiang Cai, Scott X. Chang, 2023, SSRN Electronic Journal.

The climate‐driven distribution and response to global change of soil‐borne pathogens in agroecosystems

Shuo Jiao, Xun Qian, G. Wei, 2023, Global Ecology and Biogeography.

Soil microbiomes with distinct assemblies through vertical soil profiles drive the cycling of multiple nutrients in reforested ecosystems

Qiaoping Li, Shuo Jiao, G. Wei, 2018, Microbiome.

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

Yunfeng Yang, Yahai Lu, Shuo Jiao, 2019, The ISME Journal.

Geographical pattern of methanogenesis in paddy and wetland soils across eastern China.

Yahai Lu, Shuo Jiao, Xin Hao, 2019, The Science of the total environment.

Adaptation of Soil Fungal Community Structure and Assembly to Long- Versus Short-Term Nitrogen Addition in a Tropical Forest

W. Shen, Xiankai Lu, J. Mo, 2021, Frontiers in Microbiology.

The Root Endophytic Fungi Community Structure of Pennisetum sinese from Four Representative Provinces in China

Shuo Jiao, Zhanxi Lin, Zhilei Sun, 2019, Microorganisms.

Comparison of clustering algorithms on generalized propensity score in observational studies: a simulation study

Chunhao Tu, Woon Yuen Koh, Shuo Jiao, 2013 .

The t-mixture model approach for detecting differentially expressed genes in microarrays

Shuo Jiao, Shunpu Zhang, Shuo Jiao, 2008, Functional & Integrative Genomics.

Agricultural tillage practice and rhizosphere selection interactively drive the improvement of soybean plant biomass.

Shuo Jiao, G. Wei, Xingyu Chen, 2023, Plant, cell & environment.

Imputation of coding variants in African Americans: better performance using data from the exome sequencing project

Jennifer G. Robinson, C. Carlson, T. Assimes, 2013, Bioinform..

Estimating the heritability of colorectal cancer.

C. Carlson, H. Brenner, J. Chang-Claude, 2014, Human molecular genetics.

Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.

Simon G. Coetzee, C. Carlson, Lin S. Chen, 2013, Gastroenterology.

A pooled analysis of smoking and colorectal cancer: timing of exposure and interactions with environmental factors.

R. Hayes, J. Potter, D. Seminara, 2012, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

Gene–Environment Interaction Involving Recently Identified Colorectal Cancer Susceptibility Loci

C. Carlson, C. Ulrich, H. Brenner, 2014, Cancer Epidemiology, Biomarkers & Prevention.

Metagenomics insights into responses of rhizobacteria and their alleviation role in licorice allelopathy

Yang Liu, Shuo Jiao, Jie Gu, 2023, Microbiome.

Association of aspirin and NSAID use with risk of colorectal cancer according to genetic variants.

C. Carlson, C. Ulrich, H. Brenner, 2015, JAMA.

Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.

Simon G. Coetzee, C. Carlson, Lin S. Chen, 2013, Gastroenterology.

Ecological diversity and co-occurrence patterns of bacterial community through soil profile in response to long-term switchgrass cultivation

Shuo Jiao, Mingxiu Long, T. Hu, 2017, Scientific Reports.

Biodiversity and biogeography of rhizobia associated with common bean (Phaseolus vulgaris L.) in Shaanxi Province.

E. Wang, Shuo Jiao, G. Wei, 2016, Systematic and applied microbiology.

Abstract 2190: Fine-mapping of common genetic variants associated with colorectal tumor risk identified potential functional variants

G. Abecasis, T. Hudson, D. Nickerson, 2014 .