P. James

发表

Methods for the detection and analysis of protein–protein interactions

Sara Linse, Peter James, S. Linse, 2007, Proteomics.

Characterization of the lipid droplet proteome of a clonal insulin-producing β-cell line (INS-1 832/13).

C. Holm, P. James, S. Resjö, 2012, Journal of proteome research.

Automated methods for improved protein identification by peptide mass fingerprinting

Thorsteinn S. Rögnvaldsson, F. Levander, P. James, 2004, Proteomics.

Quantitative Proteomics Targeting Classes of Motif-containing Peptides Using Immunoaffinity-based Mass Spectrometry*

P. James, C. Wingren, C. Borrebaeck, 2012, Molecular & Cellular Proteomics.

Oxidative metabolism of dopamine: a colour reaction from human midbrain analysed by mass spectrometry.

G. Arrigoni, P. James, F. Vianello, 2008, Biochimica et biophysica acta.

Human Proteinpedia enables sharing of human protein data

Y. L. Ramachandra, Christine A. Miller, J. Bader, 2008, Nature Biotechnology.

Strategy for surveying the proteome using affinity proteomics and mass spectrometry

P. James, C. Wingren, C. Borrebaeck, 2009, Proteomics.

Impact of Temperature Dependent Sampling Procedures in Proteomics and Peptidomics – A Characterization of the Liver and Pancreas Post Mortem Degradome

K. Kultima, M. Savitski, R. Zubarev, 2010, Molecular & Cellular Proteomics.

Proteomic profiling of the signal crayfish Pacifastacus leniusculus egg and spermatophore.

P. James, A. Kouba, H. Niksirat, 2014, Animal reproduction science.

Development of reagents for differential protein quantitation by subtractive parent (precursor) ion scanning.

P. Busson, F. Levander, G. Arrigoni, 2007, Journal of proteome research.

Proteomic analysis of breast tumors confirms the mRNA intrinsic molecular subtypes using different classifiers: a large-scale analysis of fresh frozen tissue samples

Å. Borg, Morten Krogh, T. Berggård, 2016, Breast Cancer Research.

Automation of Proteome Analysis

P. James, 2004 .

Large-scale proteomics analysis of human ovarian cancer for biomarkers.

Cristina Al-Khalili Szigyarto, Peter James, Mathias Uhlen, 2007, Journal of proteome research.

Proteomic Analysis and Discovery Using Affinity Proteomics and Mass Spectrometry*

D. Cahill, P. James, C. Wingren, 2011, Molecular & Cellular Proteomics.

Hunting for protein markers of hypoxia by combining plasma membrane enrichment with a new approach to membrane protein analysis.

E. Fredlund, F. Levander, Morten Krogh, 2011, Journal of proteome research.

Quantitative analysis of a phosphoproteome readily altered by the protein kinase CK2 inhibitor quinalizarin in HEK-293T cells.

L. Cesaro, L. Pinna, C. Franchin, 2015, Biochimica et biophysica acta.

Discovery-Based Protein Expression Profiling Identifies Distinct Subgroups and Pathways in Leiomyosarcomas

A. Carneiro, Morten Krogh, P. James, 2014, Molecular Cancer Research.

Chapter 9 Mass spectrometry for protein identification

F. Levander, P. James, 2005 .

Effects of insulin and the glucagon‐like peptide 1 receptor agonist liraglutide on the kidney proteome in db/db mice

P. James, James N. McGuire, J. Norlin, 2017, Physiological reports.

N-glycosylation proteome enrichment analysis in kidney reveals differences between diabetic mouse models

P. James, J. Norlin, M. H. Pedersen, 2016, Clinical Proteomics.

Parallel post‐source decay for increasing protein identification confidence levels from 2‐D gels

U. Hellman, G. Arrigoni, P. James, 2008, Proteomics.

140 mouse brain proteins identified by Ca2+-calmodulin affinity chromatography and tandem mass spectrometry.

O. Olsson, S. Linse, G. Arrigoni, 2006, Journal of proteome research.

A label-free nano-liquid chromatography-mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients.

F. Levander, P. Nanni, P. James, 2009, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

The impact of the glucagon‐like peptide 1 receptor agonist liraglutide on the streptozotocin‐induced diabetic mouse kidney proteome

P. James, M. H. Pedersen, L. Liljedahl, 2019, Physiological reports.

A Breast Cell Atlas: Organelle analysis of the MDA-MB-231 cell line by density-gradient fractionation using isotopic marking and label-free analysis

F. Levander, P. James, M. Sandín, 2015 .

Chemical derivatization of phosphoserine and phosphothreonine containing peptides to increase sensitivity for MALDI‐based analysis and for selectivity of MS/MS analysis

M. Quadroni, E. Degerman, F. Levander, 2006, Proteomics.

Altered Desaturation and Elongation of Fatty Acids in Hormone-Sensitive Lipase Null Mice

A. Shevchenko, B. Fielding, R. Herzog, 2011, PloS one.

Protein modification in the post-mating spermatophore of the signal crayfish Pacifastacus leniusculus: insight into the tyrosine phosphorylation in a non-motile spermatozoon.

P. James, M. Vancová, A. Kouba, 2016, Animal reproduction science.

Somatostatin effects on the proteome of the LNCaP cell-line.

S. Nilsson, Morten Krogh, P. James, 2007, International journal of oncology.

Confirmation of protein biomarkers of corticosteroids treatment in veal calves sampled under field conditions.

Morten Krogh, G. Arrigoni, G. Biancotto, 2014, Journal of proteome research.

Proteomic changes after fertilization and before first cleavage in rainbow trout Oncorhynchus mykiss

F. Levander, P. James, A. Kouba, 2020 .

Targeted proteomics for the indirect detection of dexamethasone treatment in bovines

G. Biancotto, P. James, F. Barrucci, 2016, Analytical and Bioanalytical Chemistry.

Omics analyses reveal a potential link between hormone-sensitive lipase and polyamine metabolism.

S. Oredsson, Morten Krogh, K. Alm, 2009, Journal of proteome research.

Quantification of egg proteome changes during fertilization in sterlet Acipenser ruthenus.

P. James, H. Niksirat, L. Chupani, 2017, Biochemical and biophysical research communications.

Biosynthesis of selenoproteins in cultured bovine mammary cells.

P. James, S. Purup, B. Åkesson, 2008, Journal of trace elements in medicine and biology : organ of the Society for Minerals and Trace Elements.

Proteomic analysis of striatal proteins in the rat model of l‐DOPA‐induced dyskinesia

W. Danysz, Morten Krogh, M. Cenci, 2007, Journal of neurochemistry.

Grading Breast Cancer Tissues Using Molecular Portraits*

Mårten Fernö, Peter James, Sofia Waldemarson, 2013, Molecular & Cellular Proteomics.

Chromatin , Gene , and RNA Regulation Discovery-Based Protein Expression Pro fi ling Identi fi es Distinct Subgroups and Pathways in Leiomyosarcomas

A. Carneiro, Morten Krogh, P. James, 2014 .

Protein Expression Analysis: From ‘Tip of the Iceberg’ to a Global Method

P. James, 2002, Disease markers.

WNT5A-mediated β-catenin-independent signalling is a novel regulator of cancer cell metabolism

F. Pontén, K. Jirström, M. Bergqvist, 2013, Carcinogenesis.

The Interactome of Palmitoyl-Protein Thioesterase 1 (PPT1) Affects Neuronal Morphology and Function

O. Reiner, P. James, K. Hansson, 2019, Front. Cell. Neurosci..

Abnormal cytoskeletal protein expression in cultured skin fibroblasts from type 1 diabetes mellitus patients with nephropathy: A proteomic approach

A. Tiengo, P. Tessari, G. Arrigoni, 2008, Proteomics. Clinical applications.

Proteome analysis of cultured fibroblasts from type 1 diabetic patients and normal subjects.

P. Tessari, G. Arrigoni, E. Iori, 2006, The Journal of clinical endocrinology and metabolism.

Protein expression changes in ovarian cancer during the transition from benign to malignant.

Ruedi Aebersold, Peter James, Sofia Waldemarson, 2012, Journal of proteome research.

Label-free protein quantification in freshly ejaculated versus post-mating spermatophores of the noble crayfish Astacus astacus.

P. James, A. Kouba, H. Niksirat, 2015, Journal of proteomics.

PhosPiR: an automated phosphoproteomic pipeline in R

L. Elo, P. James, E. Coffey, 2021, Briefings Bioinform..

Mass spectrometry analysis of a protein kinase CK2beta subunit interactome isolated from mouse brain by affinity chromatography.

L. Cesaro, L. Pinna, G. Arrigoni, 2008, Journal of proteome research.

Pathway-centric analysis of the DNA damage response to chemotherapeutic agents in two breast cell lines

F. Levander, P. James, P. Cifani, 2015 .

Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification

Fredrik Levander, Johan Teleman, Peter James, 2012, Journal of proteome research.

Critical comparison of multidimensional separation methods for increasing protein expression coverage.

Fredrik Levander, Peter James, Paolo Cifani, 2012, Journal of proteome research.

Metabolomic and proteomic analysis of a clonal insulin-producing beta-cell line (INS-1 832/13).

Peter James, Morten Krogh, Kristofer Wårell, 2008, Journal of proteome research.

Interpreting Peptide Tandem Mass-Spectrometry Fragmentation Spectra

Peter James, P. James, Werner Staudenmann, 2001 .

Protein expression changes in skeletal muscle in response to growth promoter abuse in beef cattle.

Morten Krogh, G. Biancotto, P. James, 2011, Journal of proteome research.

Binding of calcium ions and SNAP-25 to the hexa EF-hand protein secretagogin.

S. Linse, A. Lindqvist, T. Berggård, 2007, The Biochemical journal.

Plasma Lipid Composition and Risk of Developing Cardiovascular Disease

A. Shevchenko, P. Almgren, O. Melander, 2013, PloS one.

Acidic proteome of growing and resting Lactococcus lactis metabolizing maltose

B. Hahn-Hägerdal, F. Levander, P. James, 2004, Proteomics.

Quantification of membrane proteins using nonspecific protease digestions.

Salvatore Cappadona, F. Levander, G. Arrigoni, 2009, Journal of proteome research.

Proteolysis of Human Calcitonin in Excised Bovine Nasal Mucosa: Elucidation of the Metabolic Pathway by Liquid Secondary lonization Mass Spectrometry (LSIMS) and Matrix Assisted Laser Desorption lonization Mass Spectrometry (MALDI)

H. Merkle, P. James, B. Galli, 1996, Pharmaceutical Research.

Chips for proteomics: a new tool or just hype?

P. James, 2002, BioTechniques.

Tracing Cell Signalling Pathways Using a Combination of 2D Gel Electrophoresis and Mass Spectrometry

M. Quadroni, E. Carafoli, P. James, 1995 .

Facing challenges in Proteomics today and in the coming decade: Report of Roundtable Discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010.

Fredrik Levander, Jürgen Cox, Eugene Kolker, 2011, Journal of proteomics.

Glycolytic enzyme expression and pyruvate kinase activity in cultured fibroblasts from type 1 diabetic patients with and without nephropathy.

P. Tessari, L. Pinna, G. Arrigoni, 2008, Biochimica et biophysica acta.

RAPID COMMUNICATION Proteome Analysis of Cultured Fibroblasts from Type 1 Diabetic Patients and Normal Subjects

P. Tessari, G. Arrigoni, E. Iori, 2006 .

Reproducibility of tryptic digestion investigated by quantitative fourier transform ion cyclotron resonance mass spectrometry.

J. Bergquist, M. Ramström, P. James, 2005, Journal of Proteome Research.

Automated reporting from gel‐based proteomics experiments using the open source Proteios database application

Fredrik Levander, Peter James, Jari Häkkinen, 2007, Proteomics.

Proteomic analysis of breast tumors confirms the mRNA intrinsic molecular subtypes using different classifiers: a large-scale analysis of fresh frozen tissue samples

Å. Borg, Morten Krogh, T. Berggård, 2016, Breast Cancer Research.

The protein expression of Streptococcus pyogenes is significantly influenced by human plasma.

L. Björck, B. Johansson, F. Levander, 2005, Journal of proteome research.

Epitope‐specificity of recombinant antibodies reveals promiscuous peptide‐binding properties

Peter James, Stefan Wallin, S. Wallin, 2012, Protein science : a publication of the Protein Society.

Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors.

P. James, Ufuk Kirik, P. Cifani, 2015, Journal of proteome research.

Differential proteomic analysis of HT29 Cl.16E and intestinal epithelial cells by LC ESI/QTOF mass spectrometry.

F. Levander, P. Nanni, P. James, 2009, Journal of proteomics.

Relative quantification of membrane proteins in wild-type and prion protein (PrP)-knockout cerebellar granule neurons.

F. Levander, P. James, K. Hansson, 2012, Journal of proteome research.

Proteomics for the detection of indirect markers of steroids treatment in bovine muscle

G. Arrigoni, G. Biancotto, P. James, 2015, Proteomics.

Membrane protein identification: N-terminal labeling of nontryptic membrane protein peptides facilitates database searching.

F. Levander, P. James, K. Wårell, 2008, Journal of proteome research.

Impact of Temperature Dependent Sampling Procedures in Proteomics and Peptidomics – A Characterization of the Liver and Pancreas Post Mortem Degradome

K. Kultima, M. Savitski, R. Zubarev, 2010, Molecular & Cellular Proteomics.

Relative quantification of membrane proteins in wild-type and prion protein (PrP)-knockout cerebellar granule neurons.

F. Levander, P. James, K. Hansson, 2012, Journal of proteome research.

A probabilistic treatment of the missing spot problem in 2D gel electrophoresis experiments.

Peter James, Morten Krogh, Morten Krogh, 2007, Journal of proteome research.

Altered chaperone and protein turnover regulators expression in cultured skin fibroblasts from type 1 diabetes mellitus with nephropathy.

P. Tessari, A. Coracina, G. Arrigoni, 2007, Journal of proteome research.

Analysis of DIGE data using a linear mixed model allowing for protein‐specific dye effects

Peter James, Sofia Waldemarson, Morten Krogh, 2007, Proteomics.