D. Dean

S. Morré, Gilbert GREUB, D. Dean, 2022, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Tet(C) Gene Transfer between Chlamydia suis Strains Occurs by Homologous Recombination after Co-infection: Implications for Spread of Tetracycline-Resistance among Chlamydiaceae

T. Read, D. Dean, S. Joseph, 2017, Front. Microbiol..

Identification of individual genotypes of Chlamydia trachomatis from experimentally mixed serovars and mixed infections among trachoma patients

R. Stephens, D. Dean, 1994, Journal of clinical microbiology.

Uveitis associated with an epidemic outbreak of leptospirosis.

D. Dean, S. Rathinam, S. Selvaraj, 1997, American journal of ophthalmology.

Chlamydia trachomatis today: treatment, detection, immunogenetics and the need for a greater global understanding of chlamydial disease pathogenesis.

D. Dean, 2009, Drugs of today.

Immune Response to Chlamydial 60-Kilodalton Heat Shock Protein in Tears from Nepali Trachoma Patients

D. Dean, T. Hessel, S. Dhital, 2001, Infection and Immunity.

Fluorometric Paper-Based, Loop-Mediated Isothermal Amplification Devices for Quantitative Point-of-Care Detection of Methicillin-Resistant Staphylococcus aureus (MRSA).

A. deMello, M. Schmelcher, P. Howes, 2021, ACS sensors.

Correlating Chlamydia trachomatis infectious load with urogenital ecological success and disease pathogenesis.

D. Dean, P. Nogueira, J. P. Gomes, 2006, Microbes and infection.

Major outer membrane protein variants of Chlamydia trachomatis are associated with severe upper genital tract infections and histopathology in San Francisco.

N. Padian, D. Dean, G. Bolan, 1995, The Journal of infectious diseases.

Analysis of Genetic Diversity and Population Structure for the Native Tree Viburnum rufidulum Occurring in Kentucky and Tennessee

B. Ownley, D. Dean, R. Trigiano, 2015 .

Characterization of a Strain of Chlamydia pneumoniae Isolated from a Coronary Atheroma by Analysis of theomp1 Gene and Biological Activity in Human Endothelial Cells

J. Ramirez, R. Molestina, D. Dean, 1998, Infection and Immunity.

is a negative regulator of responses and modulates long-term sequelae resulting from Chlamydia trachomatis infections in humans.

D. Ojcius, S. Morré, D. Dean, 2014 .

Comparison of Performance and Cost-Effectiveness of Direct Fluorescent-Antibody, Ligase Chain Reaction, and PCR Assays for Verification of Chlamydial Enzyme Immunoassay Results for Populations with a Low to Moderate Prevalence of Chlamydia trachomatis Infection

D. Dean, Michael McCarthy, D. Ferrero, 1998, Journal of Clinical Microbiology.

Prevalence of Chlamydia trachomatis-Specific Antibodies before and after Mass Drug Administration for Trachoma in Community-Wide Surveys of Four Communities in Nepal

M. Gambhir, D. Dean, S. Gwyn, 2017, The American journal of tropical medicine and hygiene.

Population-based genetic epidemiologic analysis of Chlamydia trachomatis serotypes and lack of association between ompA polymorphisms and clinical phenotypes.

S. Tavaré, K. Millman, C. Black, 2006, Microbes and infection.

Impact of annual targeted treatment on infectious trachoma and susceptibility to reinfection.

D. Dean, Berna Atik, Stephan Lagree, 2006, JAMA.

The application of precision breeding (PB) for crop improvement is fully consistent with the plant life cycle: the utility of PB for grapevine

D. Dean, S. Dhekney, D. Gray, 2014 .

Use of a Chlamydia trachomatis DNA probe for detection of ocular chlamydiae

S. Falkow, D. Dean, P. Courtright, 1989, Journal of clinical microbiology.

SARS-CoV-2 variants of concern Alpha and Delta show increased viral load in saliva

D. Dean, C. Parkinson, K. L. King, 2022, medRxiv.

A Genome-wide RNAi Screen for Microtubule Bundle Formation and Lysosome Motility Regulation in Drosophila S2 Cells.

Anne E Carpenter, Andrew R. Cohen, Andrew R Cohen, 2016, Cell reports.

Chlamydia trachomatis L2c Infection in a Porcine Model Produced Urogenital Pathology and Failed to Induce Protective Immune Responses Against Re-Infection

D. Vanrompay, D. Dean, W. Van den Broeck, 2020, Frontiers in Immunology.

Chlamydia trachomatis regulates growth and development in response to host cell fatty acid availability in the absence of lipid droplets

D. Dean, M. A. Recuero-Checa, Manu Sharma, 2018, Cellular microbiology.

Ten polymorphic microsatellite loci identified from a small insert genomic library for Peronospora tabacina

M. Thines, J. Ristaino, D. Dean, 2012, Mycologia.

Identification of bacterial pathogens in patients with endophthalmitis by 16S ribosomal DNA typing.

D. Dean, T. Margolis, V. Cevallos, 1999, American journal of ophthalmology.

Molecular identification of an avian strain of Chlamydia psittaci causing severe keratoconjunctivitis in a bird fancier.

D. Dean, J. Schachter, C. Dawson, 1995, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Comprehensive bioinformatics analysis of Mycoplasma pneumoniae genomes to investigate underlying population structure and type-specific determinants

Heta P. Desai, Maureen H Diaz, T. Read, 2017, PloS one.

Zoonotic Chlamydiaceae Species Associated with Trachoma, Nepal

D. Dean, K. Sachse, J. Rothschild, 2013, Emerging infectious diseases.

16S Ribosomal DNA Typing for Identification of Pathogens in Patients with Bacterial Keratitis

D. Dean, C. Knox, Vickey Cevellos, 1998, Journal of Clinical Microbiology.

Comparative Analysis of Chlamydia psittaci Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Host Range

T. Read, X. Didelot, D. Dean, 2013, mBio.

Chlamydia psittaci comparative genomics reveals intraspecies variations in the putative outer membrane and type III secretion system genes

Shankar S. Changayil, D. MacCannell, Lori Rowe, 2015, Microbiology.

Tetracycline Selective Pressure and Homologous Recombination Shape the Evolution of Chlamydia suis: A Recently Identified Zoonotic Pathogen

T. Read, X. Didelot, D. Dean, 2016, Genome biology and evolution.

Direct sequence evaluation of the major outer membrane protein gene variant regions of Chlamydia trachomatis subtypes D', I', and L2'

R. Stephens, D. Dean, M. Patton, 1991, Infection and immunity.

Generation of Tetracycline and Rifamycin Resistant Chlamydia Suis Recombinants

T. Read, D. Dean, T. Pesch, 2021, Frontiers in Microbiology.

Evaluating the Antibiotic Susceptibility of Chlamydia – New Approaches for in Vitro Assays

D. Dean, H. Marti, N. Borel, 2018, Front. Microbiol..

Predicting Phenotype and Emerging Strains among Chlamydia trachomatis Infections

W. Bruno, G. Myers, T. Read, 2009, Emerging infectious diseases.

Identification of Leptospira species in the pathogenesis of uveitis and determination of clinical ocular characteristics in south India.

D. Dean, P. Namperumalsamy, K. Chu, 1998, The Journal of infectious diseases.

Limitations of screening tests for the detection of Chlamydia trachomatis in asymptomatic adolescent and young adult women.

P. Rice, D. Dean, L. Shrier, 2004, American journal of obstetrics and gynecology.

Assessing the genetic diversity of the genus Viburnumusing simple sequence repeats

D. Dean, 2014 .

Assessing the genetic diversity of the genus Viburnum using simple sequence repeats

D. Dean, 2014 .

Persistent Chlamydia trachomatisInfections Resist Apoptotic Stimuli

D. Dean, V. Powers, 2001, Infection and Immunity.

Population-Based Genetic and Evolutionary Analysis of Chlamydia trachomatis Urogenital Strain Variation in the United States

Robert E. Johnson, S. Tavaré, K. Millman, 2004, Journal of bacteriology.

Genotyping Chlamydia trachomatis by PCR.

D. Dean, 1999, Methods in molecular medicine.

TRAIL-R1 Is a Negative Regulator of Pro-Inflammatory Responses and Modulates Long-Term Sequelae Resulting from Chlamydia trachomatis Infections in Humans

D. Ojcius, S. Morré, D. Dean, 2014, PloS one.

Recombination in the ompA Gene but Not theomcB Gene of Chlamydia Contributes to Serovar-Specific Differences in Tissue Tropism, Immune Surveillance, and Persistence of the Organism

S. Tavaré, K. Millman, D. Dean, 2001, Journal of bacteriology.

Chlamydia trachomatis Strain Types Have Diversified Regionally and Globally with Evidence for Recombination across Geographic Divides

J. Dillner, S. Morré, D. Dean, 2017, Front. Microbiol..

Multiplex recombinase polymerase amplification for high-risk and low-risk type HPV detection, as potential local use in single tube

T. Palaga, D. Dean, D. Wongsawaeng, 2023, Scientific Reports.

Rapid colorimetric loop-mediated isothermal amplification for hypersensitive point-of-care Staphylococcus aureus enterotoxin A gene detection in milk and pork products

T. Vilaivan, D. Dean, N. Somboonna, 2020, Scientific Reports.

Rapid and sensitive detection of Chlamydia trachomatis sexually transmitted infections in resource-constrained settings in Thailand at the point-of-care

D. Dean, N. Arunrut, W. Kiatpathomchai, 2018, PLoS neglected tropical diseases.

Molecular and mutation trends analyses of omp1 alleles for serovar E of Chlamydia trachomatis. Implications for the immunopathogenesis of disease.

K. Millman, D. Dean, Deborah Dean, 1997, The Journal of clinical investigation.

Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots.

W. Bruno, D. Dean, J. P. Gomes, 2006, Genome research.

In Vitro Recombinants of Antibiotic-Resistant Chlamydia trachomatis Strains Have Statistically More Breakpoints than Clinical Recombinants for the Same Sequenced Loci and Exhibit Selection at Unexpected Loci

W. Bruno, D. Dean, A. Yen, 2011, Journal of bacteriology.

Unexpected Loci Sequenced Loci and Exhibit Selection at than Clinical Recombinants for the Same Strains Have Statistically More Breakpoints trachomatisAntibiotic-Resistant Chlamydia Recombinants of In Vitro

W. Bruno, Albert, D. Dean, 2012 .

Sequence Polymorphisms in pfcrt Are Strongly Associated with Chloroquine Resistance in Plasmodium falciparum

D. Dean, W. Stamm, 2001 .

Identification of Novel Single Nucleotide Polymorphisms in Inflammatory Genes as Risk Factors Associated with Trachomatous Trichiasis

H. Erlich, L. Steiner, D. Dean, 2008, PloS one.

Chlamydia trachomatis-Infected Patients Display Variable Antibody Profiles against the Nine-Member Polymorphic Membrane Protein Family

R. Ness, P. Bavoil, R. Hsia, 2009, Infection and Immunity.

Molecular Evolution of Chlamydiales

K. Millman, D. Dean, 2008 .

Polymorphisms in the Nine Polymorphic Membrane Proteins of Chlamydia trachomatis across All Serovars: Evidence for Serovar Da Recombination and Correlation with Tissue Tropism

W. Bruno, D. Dean, J. P. Gomes, 2006, Journal of bacteriology.

Immunoreactivity and differential developmental expression of known and putative Chlamydia trachomatis membrane proteins for biologically variant serovars representing distinct disease groups.

R. Hsia, D. Dean, J. P. Gomes, 2005, Microbes and infection.

Recombination in the Genome of Chlamydia trachomatis Involving the Polymorphic Membrane Protein C Gene Relative to ompA and Evidence for Horizontal Gene Transfer

W. Bruno, D. Dean, J. P. Gomes, 2004, Journal of bacteriology.

Tryptophan Operon Diversity Reveals Evolutionary Trends among Geographically Disparate Chlamydia trachomatis Ocular and Urogenital Strains Affecting Tryptophan Repressor and Synthase Function

D. Dean, N. Somboonna, S. Bommana, 2021, mBio.

Chlamydia pneumoniae Burden in Carotid Arteries Is Associated With Upregulation of Plaque Interleukin-6 and Elevated C-Reactive Protein in Serum

M. Lawton, S. Johnston, D. Dean, 2005, Arteriosclerosis, thrombosis, and vascular biology.

C-Reactive Protein Levels and Viable Chlamydia pneumoniae in Carotid Artery Atherosclerosis

M. Lawton, S. Johnston, W. Browner, 2001, Stroke.

Comparative Expression Profiling of the Chlamydia trachomatis pmp Gene Family for Clinical and Reference Strains

D. Dean, J. P. Gomes, M. Borrego, 2007, PloS one.

Hypervirulent Chlamydia trachomatis Clinical Strain Is a Recombinant between Lymphogranuloma Venereum (L2) and D Lineages

T. Read, D. Ojcius, D. Dean, 2011, mBio.

Development and Evaluation of a Point-of-Care Test in a Low-Resource Setting with High Rates of Chlamydia trachomatis Urogenital Infections in Fiji

D. Dean, D. Mitra, M. Kama, 2021, Journal of clinical microbiology.

Rapid detection and strain typing of Chlamydia trachomatis using a highly multiplexed microfluidic PCR assay

T. Read, D. Dean, S. Joseph, 2017, PloS one.

Whole-Genome Enrichment and Sequencing of Chlamydia trachomatis Directly from Patient Clinical Vaginal and Rectal Swabs

Brian H. Raphael, T. Read, D. Dean, 2020, mSphere.

Engineered phage-based therapeutic materials inhibit Chlamydia trachomatis intracellular infection.

S. Bhattarai, Seung-Wuk Lee, S. Yoo, 2012, Biomaterials.

Chlamydial and gonorrheal neglected sexually transmitted diseases among Pacific Islanders of the Western Pacific Region—A narrative review and call to action

Joelle M. Brown, D. Dean, M. Kama, 2023, PLoS neglected tropical diseases.

Hyperendemic Chlamydia trachomatis sexually transmitted infections among females represent a high burden of asymptomatic disease and health disparity among Pacific Islanders in Fiji

D. Dean, M. Kama, A. Blair, 2020, PLoS neglected tropical diseases.

Stromal Fibroblasts Drive Host Inflammatory Responses That Are Dependent on Chlamydia trachomatis Strain Type and Likely Influence Disease Outcomes

D. Dean, Amber L. Jolly, Sameeha Rau, 2019, mBio.

Discovering and Differentiating New and Emerging Clonal Populations of Chlamydia trachomatis with a Novel Shotgun Cell Culture Harvest Assay

D. Dean, N. Somboonna, S. Mead, 2008, Emerging infectious diseases.

Impact of oral azithromycin on recurrence of trachomatous trichiasis in Nepal over 1 year

D. Dean, R. Kandel, H. Zhang, 2006, British Journal of Ophthalmology.

Improved sensitivity of a modified polymerase chain reaction amplified DNA probe in comparison with serial tissue culture passage for detection of Chlamydia trachomatis in conjunctival specimens from nepal.

D. Dean, P. O'Hanley, C. Pant, 1989, Diagnostic microbiology and infectious disease.

Useofa Chlamydia trachomatis DNA ProbeforDetection of Ocular Chlamydiae

S. Falkow, D. Dean, P. Courtright, 1989 .

Targeted Treatment of Active Trachoma—Reply

D. Dean, Berna Atik, Stephan Lagree, 2007 .

Evaluating the "A" component of the SAFE strategy.

D. Dean, Berna Atik, Q. L. Vu, 2007, The Lancet. Infectious diseases.

Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis

T. Read, D. Dean, N. Ziklo, 2023, bioRxiv.

Chlamydia trachomatis infections.

D. Dean, G. Bolan, H. Weinstock, 1994, Infectious disease clinics of North America.

Population genomics of Chlamydia trachomatis: insights on drift, selection, recombination, and population structure.

T. Read, X. Didelot, S. Morré, 2012, Molecular biology and evolution.

Research article Population Genomics of Chlamydia trachomatis :I nsights on Drift, Selection, Recombination, and Population Structure

T. Read, X. Didelot, S. Morré, 2012 .

A Fresh Look at C Reactive Protein Measurements

P. Davis, D. Dean, I. Addison, 1985 .

Conjunctival impression cytology for vitamin A deficiency in the presence of infectious trachoma

T. Lietman, D. Dean, S. Dhital, 1998, The British journal of ophthalmology.

Screening and Characterization of 11 Novel Microsatellite Markers from Viburnum dilatatum

B. Ownley, D. Dean, R. Trigiano, 2011 .

Analyzing microsatellites using the QIAxcel system.

D. Dean, R. Trigiano, P. Wadl, 2013, Methods in molecular biology.

Novel Chlamydia trachomatis Strains in Heterosexual Sex Partners, Indianapolis, Indiana, USA

J. Fortenberry, D. Dean, James A. Williams, 2014, Emerging infectious diseases.

Use of gene sequences as type for naming prokaryotes: Recommendations of the international committee on the taxonomy of chlamydiae

M. Horn, R. Valdivia, D. Vanrompay, 2023, New microbes and new infections.

Development of Microsatellite Markers from Crape Myrtle (Lagerstroemia L.)

R. Cabrera, D. Dean, R. Trigiano, 2010 .

Overview of the epidemiology, microbiology, and pathogenesis of Leptospira spp. in humans.

D. Dean, D. Dean, R. Plank, 2000, Microbes and infection.

among species.

T. Read, X. Didelot, M. Frace, 2016 .

Multiple Chlamydiaceae Species in Trachoma: Implications for Disease Pathogenesis and Control

D. Dean, R. Kandel, H. K. Adhikari, 2008, PLoS medicine.

Modeling the economic net benefit of a potential vaccination program against ocular infection with Chlamydia trachomatis.

M. A. Colchero, D. Dean, K. Frick, 2004, Vaccine.

Distributed under Creative Commons Cc-by 4.0 Population Structure of Neisseria Gonorrhoeae Based on Whole Genome Data and Its Relationship with Antibiotic Resistance

C. del Rio, T. Read, M. Unemo, 2022 .

The unique microbial diversity, community composition and networks of Pacific Islander endocervical and vaginal microbiomes in the presence or absence of Chlamydia trachomatis infection using metagenomic shotgun sequencing

T. Read, K. Jijakli, D. Dean, 2023, bioRxiv.