S. Sim

发表

White pupae genes in the Tephritids Ceratitis capitata, Bactrocera dorsalis and Zeugodacus cucurbitae: a story of parallel mutations

J. Ragoussis, A. Darby, H. Djambazian, 2020 .

A generic white pupae sex selection phenotype for insect pest control

J. Ragoussis, H. Djambazian, F. Marec, 2020, bioRxiv.

The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species

Georgios K. Georgakilas, Andrew E. Rosselot, Monica F. Poelchau, 2016, Genome Biology.

Rapid evolution of flowering time by an annual plant in response to a climate fluctuation

S. Sim, S. Franks, A. E. Weis, 2007, Proceedings of the National Academy of Sciences.

Whole Genome Sequencing of the Braconid Parasitoid Wasp Fopius arisanus, an Important Biocontrol Agent of Pest Tepritid Fruit Flies

T. Murphy, S. Sim, S. Geib, 2017, G3: Genes, Genomes, Genetics.

The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species

Georgios K. Georgakilas, Andrew E. Rosselot, Monica F. Poelchau, 2016, Genome biology.

Population genomics and comparisons of selective signatures in two invasions of melon fly, Bactrocera cucurbitae (Diptera: Tephritidae)

L. Leblanc, S. Sim, S. Geib, 2018, Biological Invasions.

The Geographic Distribution of Rhagoletis pomonella (Diptera: Tephritidae) in the Western United States: Introduced Species or Native Population?

Charles C. Y. Xu, J. Feder, W. Yee, 2013 .

Distinct Patterns of Genetic Variation Alter Flowering Responses of Arabidopsis Accessions to Different Daylengths1[C][W][OA]

G. Coupland, J. Schmitt, S. Sim, 2009, Plant Physiology.

A chromosome-scale genome assembly of a Bacillus thuringiensis Cry1Ac insecticidal protein resistant strain of Helicoverpa zea

O. Perera, S. Sim, S. Geib, 2022, bioRxiv.

Genome Annotation Generator: a simple tool for generating and correcting WGS annotation tables for NCBI submission

S. Sim, S. Geib, Forest T. Bremer, 2018, GigaScience.

Taro Genome Assembly and Linkage Map Reveal QTLs for Resistance to Taro Leaf Blight

Thomas K. Wolfgruber, M. Kantar, M. Bellinger, 2020, G3.

Whole-genome resequencing data support a single introduction of the invasive white pine sawfly, Diprion similis

C. Linnen, S. Sim, S. Geib, 2022, bioRxiv.

Effects of Genetic Perturbation on Seasonal Life History Plasticity

Brook T. Moyers, G. Coupland, S. Welch, 2009, Science.

Using genotyping by sequencing (GBS) to identify loci inColocasiae esculentalinked toPhytophthora colocasiaeresistance

H. Kimball, S. Sim, S. Geib, 2016 .

A Unified Protocol for CRISPR/Cas9-Mediated Gene Knockout in Tephritid Fruit Flies Led to the Recreation of White Eye and White Puparium Phenotypes in the Melon Fly

S. Sim, S. Geib, Tyler J. Simmonds, 2022, Journal of Economic Entomology.

Whole Genomes Reveal Evolutionary Relationships and Mechanisms Underlying Gene-Tree Discordance in Neodiprion Sawflies

D. Weisrock, C. Linnen, S. Sim, 2023, bioRxiv.

Molecular characterization of interspecific competition of Diachasmimorpha longicaudata (Ashmead) and Fopius arisanus (Sonan) parasitizing the oriental fruit fly, Bactrocera dorsalis (Hendel)

E. Jang, S. Sim, S. Geib, 2017 .

White pupae phenotype of tephritids is caused by parallel mutations of a MFS transporter

J. Ragoussis, Thu N M Nguyen, A. Darby, 2021, Nature Communications.

A New Diagnostic Resource for Ceratitis capitata Strain Identification Based on QTL Mapping

S. Sim, S. Geib, N. Barr, 2017, G3: Genes, Genomes, Genetics.

Evaluating Bactrocera dorsalis (Hendel) (Diptera: Tephritidae) Response to Methyl Eugenol: Comparison of Three Common Bioassay Methods

N. Manoukis, S. Sim, D. Cha, 2022, Journal of Economic Entomology.

Identification of Host Fruit Volatiles from Domestic Apple (Malus domestica), Native Black Hawthorn (Crataegus douglasii) and Introduced Ornamental Hawthorn (C. monogyna) Attractive to Rhagoletis pomonella Flies from the Western United States

J. Feder, W. Yee, S. Sim, 2012, Journal of Chemical Ecology.

BEHAVIORAL EVIDENCE FOR FRUIT ODOR DISCRIMINATION AND SYMPATRIC HOST RACES OF RHAGOLETIS POMONELLA FLIES IN THE WESTERN UNITED STATES

J. Feder, W. Yee, C. Linn, Jr., 2012, Evolution; international journal of organic evolution.

A field test for host fruit odour discrimination and avoidance behaviour for Rhagoletis pomonella flies in the western United States

J. Feder, W. Yee, C. Linn, Jr., 2012, Journal of evolutionary biology.

J. Feder, W. Yee, S. Sim, 2012, Journal of Chemical Ecology.

Hybridization and the spread of the apple maggot fly, Rhagoletis pomonella (Diptera: Tephritidae), in the northwestern United States

J. Feder, D. Schwarz, James J. Smith, 2015, Evolutionary applications.

Transpacific coalescent pathways of coconut rhinoceros beetle biotypes: Resistance to biological control catalyses resurgence of an old pest

S. Sim, S. Geib, D. Rubinoff, 2018, Molecular ecology.

Widespread genomic divergence during sympatric speciation

Michael S. Taylor, P. Nosil, J. Feder, 2010, Proceedings of the National Academy of Sciences.

The USDA-ARS Ag100Pest Initiative: High-Quality Genome Assemblies for Agricultural Pest Arthropod Research

Monica F. Poelchau, S. Sim, S. Geib, 2021, Insects.

Transcriptome of the egg parasitoid Fopius arisanus: an important biocontrol tool for Tephritid fruit fly suppression

S. Sim, S. Geib, B. Calla, 2015, GigaScience.

A Chromosome-Scale Assembly of the Bactrocera cucurbitae Genome Provides Insight to the Genetic Basis of white pupae

S. Sim, S. Geib, Scott M Geib, 2017, G3: Genes, Genomes, Genetics.

Environmental interactions during host race formation: host fruit environment moderates a seasonal shift in phenology in host races of Rhagoletis pomonella

J. Feder, S. Sim, D. Hahn, 2012 .

Insight into weevil biology from a reference quality genome of the boll weevil, Anthonomus grandis grandis Boheman (Coleoptera: Curculionidae).

S. Sim, S. Geib, Anna K. Childers, 2022, G3.

Draft Genome of the Rice Coral Montipora capitata Obtained from Linked-Read Sequencing

M. Takabayashi, M. Bellinger, S. Sim, 2019, Genome biology and evolution.

Development of chloroplast single nucleotide polymorphisms (SNPs) as a tool towards interspecies typing of Anthurium germplasm

J. Suzuki, S. Sim, S. Geib, 2017 .

Molecular Markers Detect Cryptic Predation on Coffee Berry Borer (Coleoptera: Curculionidae) by Silvanid and Laemophloeid Flat Bark Beetles (Coleoptera: Silvanidae, Laemophloeidae) in Coffee Beans

S. Sim, S. Geib, Nicole M Yoneishi, 2015, Journal of Economic Entomology.

Arthropod genomics research in the United States Department of Agriculture , Agricultural Research Service : Applications of RNA interference and CRISPR gene-editing technologies in pest control

Michael E. Sparks, A. Handler, Saikat Ghosh, 2017 .

The ABCs of CRISPR in Tephritidae: developing methods for inducing heritable mutations in the genera Anastrepha, Bactrocera and Ceratitis

S. Sim, S. Geib, A. Kauwe, 2019, Insect molecular biology.

HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly

S. Sim, S. Geib, Tyler J. Simmonds, 2022, BMC Genomics.

Rapid and repeatable host plant shifts drive reproductive isolation following a recent human‐mediated introduction of the apple maggot fly, Rhagoletis pomonella

J. Feder, D. Schwarz, W. Yee, 2019, Evolution; international journal of organic evolution.

Molecular Species Identification of Cryptic Apple and Snowberry Maggots (Diptera: Tephritidae) in Western and Central Washington

J. Feder, D. Schwarz, W. Yee, 2013, Environmental entomology.

The frontier of ecological speciation: Investigating western populations of Rhagoletis pomonella

S. Sim, 2013 .

Genetic Evidence for the Introduction of Rhagoletis pomonella (Diptera:Tephritidae) into the Northwestern United States

Jason D. K. Dzurisin, J. Feder, D. Schwarz, 2017, Journal of Economic Entomology.

mvmapper: Interactive spatial mapping of genetic structures

T. Jombart, S. Sim, S. Geib, 2018, Molecular ecology resources.

Effects of Genetic Perturbation on Seasonal Life History Plasticity

Brook T. Moyers, G. Coupland, S. Welch, 2009, Science.

Chromosome-scale genome assembly of the rusty patched bumble bee, Bombus affinis (Cresson) (Hymenoptera: Apidae), an endangered North American pollinator.

Tamara A. Smith, S. Sim, S. Geib, 2023, G3.

Repeated shifts in sociality are associated with fine-tuning of highly conserved and lineage-specific enhancers in a socially flexible bee

Beryl M. Jones, R. Schweizer, S. Sim, 2024, bioRxiv.

Recurrent selection shapes the genomic landscape of differentiation between a pair of host-specialized haplodiploids that diverged with gene flow.

C. Linnen, S. Sim, Ryan D. Ridenbaugh, 2024, Molecular ecology.

The genetic basis of the black pupae phenotype in tephritid fruit flies

G. Gouvi, A. Choo, S. Sim, 2024, bioRxiv.