Rui Shi

发表

Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Populus trichocarpa[OPEN]

R. Sederoff, Huiyu Li, Jack P. Wang, 2019, Plant Cell.

Towards a systems approach for lignin biosynthesis in Populus trichocarpa: transcript abundance and specificity of the monolignol biosynthetic genes.

R. Sederoff, S. Heber, Rui Shi, 2010, Plant & cell physiology.

A standard reaction condition and a single HPLC separation system are sufficient for estimation of monolignol biosynthetic pathway enzyme activities

R. Sederoff, Rui Shi, Quanzi Li, 2012, Planta.

Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling[W]

Cranos M. Williams, R. Sederoff, Jack P. Wang, 2014, Plant Cell.

Involvement of CesA4, CesA7-A/B and CesA8-A/B in secondary wall formation in Populus trichocarpa wood.

Mark F. Davis, R. Sederoff, J. Ralph, 2019, Tree physiology.

A cell wall-bound anionic peroxidase, PtrPO21, is involved in lignin polymerization in Populus trichocarpa

R. Sederoff, Jack P. Wang, D. Muddiman, 2016, Tree Genetics & Genomes.

Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O-methyltransferase activity in poplar monolignol biosynthesis

R. Sederoff, Jack P. Wang, D. Muddiman, 2015, Proceedings of the National Academy of Sciences.

Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa

R. Sederoff, Jack P. Wang, D. Muddiman, 2013, Planta.

Monolignol Benzoates Incorporate into the Lignin of Transgenic Populus trichocarpa Depleted in C3H and C4H

R. Sederoff, Jack P. Wang, J. Ralph, 2020 .

Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa

R. Sederoff, Jack P. Wang, Y. Lin, 2017, Planta.

Filter paper-based spin column for low throughput nucleic acid purification

Rui Shi, D. R. Panthee, Ramsey S. Lewis, 2018, bioRxiv.

A novel plant DNA extraction method using filter paper-based 96-well spin plate

Rui Shi, D. R. Panthee, 2017, Planta.

MicroRNAs in trees

R. Sederoff, Rui Shi, V. Chiang, 2012, Plant Molecular Biology.

Transcriptome-Based Analysis of Tomato Genotypes Resistant to Bacterial Spot (Xanthomonas perforans) Race T4

Rui Shi, D. R. Panthee, 2019, bioRxiv.

Homoeologous chromosome exchange explains the creation of a QTL affecting soil‐borne pathogen resistance in tobacco

Rui Shi, Jing Jin, David Shew, 2021, Plant biotechnology journal.

Identification and validation of SNP markers associated with Wz-mediated Phytophthora nicotianae resistance in Nicotiana tabacum L.

Rui Shi, S. Kernodle, Abigail Dexter-Boone, 2019, Molecular Breeding.

Genetic Control of Facultative Parthenocarpy in Nicotiana tabacum L.

Rui Shi, M. Humphry, Abigail Dexter-Boone, 2019, The Journal of heredity.

Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa

R. Sederoff, Jack P. Wang, D. Muddiman, 2013, Planta.

Complete Proteomic-Based Enzyme Reaction and Inhibition Kinetics Reveal How Monolignol Biosynthetic Enzyme Families Affect Metabolic Flux and Lignin in Populus trichocarpa[W]

Cranos M. Williams, R. Sederoff, Jack P. Wang, 2014, Plant Cell.

Facile means for quantifying microRNA expression by real-time PCR.

Rui Shi, V. Chiang, Vincent L Chiang, 2005, BioTechniques.

Monolignol Pathway 4-Coumaric Acid:Coenzyme A Ligases in Populus. trichocarpa: Novel Specificity, Metabolic Regulation, and Simulation of Coenzyme A Ligation Fluxes1[W]

Cranos M. Williams, R. Sederoff, Jack P. Wang, 2013, Plant Physiology.

Novel and Mechanical Stress–Responsive MicroRNAs in Populus trichocarpa That Are Absent from Arabidopsisw⃞

Vincent L. Chiang, Rui Shi, V. Chiang, 2005, The Plant Cell Online.

Computational prediction of plant miRNA targets.

Rui Shi, V. Chiang, Ying-Hsuan Sun, 2011, Methods in molecular biology.

Specific down-regulation of PAL genes by artificial microRNAs in Populus trichocarpa

R. Sederoff, Rui Shi, Chenmin Yang, 2010, Planta.

A robust chromatin immunoprecipitation protocol for studying transcription factor–DNA interactions and histone modifications in wood-forming tissue

R. Sederoff, Wei Li, Y. Lin, 2014, Nature Protocols.

Rapid EST isolation from chromosome 1R of rye

Jun Hu, Huan Wang, Zanmin Hu, 2008, BMC Plant Biology.

Construction and characterization of chromosome 1B specific DNA library of wheat

Zanmin Hu, Rui Shi, Yihua Zhou, 2005 .

Isolation of expressed sequences from a specific chromosome of Thinopyrum intermedium infected by BYDV.

Rui Shi, Zan-min Hu, Weibo Yin, 2009, Genome.

RNA silencing in plants by the expression of siRNA duplexes.

Rui Shi, V. Chiang, Laigeng Li, 2004, Nucleic acids research.

A simple improved-throughput xylem protoplast system for studying wood formation

R. Sederoff, Wei Li, Jack P. Wang, 2014, Nature Protocols.

The AREB1 Transcription Factor Influences Histone Acetylation to Regulate Drought Responses and Tolerance in Populus trichocarpa[OPEN]

M. Li, Jack P. Wang, Chenguang Zhou, 2018, Plant Cell.

Comparative Metagenomic and Metabolomic Profiling of Rhizospheres of Panax notoginseng Grown under Forest and Field Conditions

Rui Shi, A. Horowitz, Bin Xiong, 2021, Agronomy.

A novel plant DNA extraction method using filter paper-based 96-well spin plate

Rui Shi, D. R. Panthee, 2017, Planta.

Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis

Cranos M. Williams, Mark F. Davis, Fikret Isik, 2018, Nature Communications.

A standard reaction condition and a single HPLC separation system are sufficient for estimation of monolignol biosynthetic pathway enzyme activities

R. Sederoff, Rui Shi, Quanzi Li, 2012, Planta.

Vibrational sum-frequency-generation (SFG) spectroscopy study of the structural assembly of cellulose microfibrils in reaction woods

Yong Bum Park, Sunkyu Park, Rui Shi, 2014, Cellulose.

Poly(T) adaptor RT-PCR.

Rui Shi, V. Chiang, Ying-Hsuan Sun, 2012, Methods in molecular biology.

Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa

Cranos M. Williams, R. Sederoff, Jack P. Wang, 2021, Frontiers in Plant Science.

Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa

R. Sederoff, Wei Li, Huiyu Li, 2017, Proceedings of the National Academy of Sciences.

Comprehensive quantification of monolignol-pathway enzymes in Populus trichocarpa by protein cleavage isotope dilution mass spectrometry.

R. Sederoff, Jack P. Wang, D. Muddiman, 2012, Journal of proteome research.

Filter paper-based spin column method for cost-efficient DNA or RNA purification

Dilip R. Panthee, Rui Shi, D. R. Panthee, 2018, PloS one.

A Proteomic‐Based Quantitative Analysis of the Relationship Between Monolignol Biosynthetic Protein Abundance and Lignin Content Using Transgenic Populus trichocarpa

Cranos M. Williams, R. Sederoff, Jack P. Wang, 2016 .

Growth under field conditions affects lignin content and productivity in transgenic Populus trichocarpa with altered lignin biosynthesis.

J. Domec, Rui Shi, Chenmin Yang, 2014 .