Yavor Hadzhiev

发表

Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis

Boris Lenhard, Piero Carninci, Uwe Strähle, 2013, Genome research.

Functional diversification of sonic hedgehog paralog enhancers identified by phylogenomic reconstruction

A. Meyer, F. Müller, U. Strähle, 2007, Genome Biology.

Phylogenomic and functional analyses of enhancer evolution of sonic hedgehog paralogs

Yavor Hadzhiev, 2007 .

Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos

Markus Reischl, Marco Ferg, Urban Liebel, 2009, Nature Methods.

The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome

F. Müller, R. Sanges, S. Basu, 2016, Scientific Reports.

Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing

Piotr J. Balwierz, Piero Carninci, A. Suzuki, 2020, Nature Communications.

Intertwined canonical and non-canonical initiation in dual promoters are pervasive and differentially regulate Polymerase II transcription

Piero Carninci, A. Suzuki, B. Lenhard, 2018 .

Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development

E. Birney, G. Amore, E. Stupka, 2013, Nucleic acids research.

Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

Juan M. Vaquerizas, Anne E. Eagle, Piotr J. Balwierz, 2022, Nature genetics.

Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs

Piero Carninci, B. Lenhard, F. Müller, 2015, Nucleic acids research.

Estrogen sensitive liver transgenic zebrafish (Danio rerio) line (Tg(vtg1:mCherry)) suitable for the direct detection of estrogenicity in environmental samples.

B. Kriszt, Yavor Hadzhiev, B. Urbányi, 2019, Aquatic toxicology.

Loss-of-function mutations in RAB18 cause Warburg micro syndrome.

Mark T. Handley, J. Graham, F. Müller, 2011, American journal of human genetics.

Redefining the initiation and maintenance of zebrafish interrenal steroidogenesis by characterizing the key enzyme cyp11a2.

I. Miguel-Escalada, F. Müller, Yavor Hadzhiev, 2013, Endocrinology.

Two Lamprey Hedgehog Genes Share Non-Coding Regulatory Sequences and Expression Patterns with Gnathostome Hedgehogs

M. Ekker, S. Rétaux, F. Müller, 2010, PloS one.

A cell cycle-coordinated Polymerase II transcription compartment encompasses gene expression before global genome activation

Haseeb K. Qureshi, G. Hutvagner, F. Müller, 2019, Nature Communications.

A cell cycle-coordinated nuclear compartment for Polymerase II transcription encompasses the earliest gene expression before global genome activation

Haseeb K. Qureshi, G. Hutvagner, L. Tora, 2018, bioRxiv.

CMTr mediated 2′-O-ribose methylation status of cap-adjacent nucleotides across animals

Yavor Hadzhiev, J. Pettitt, M. Soller, 2022, RNA.

The miR-430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation.

S. Gustincich, F. Müller, S. Burgess, 2023, Developmental cell.

Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease

Tao Wang, Yavor Hadzhiev, Ferenc Müller, 2018, Nature Neuroscience.

Ancestrally Duplicated Conserved Noncoding Element Suggests Dual Regulatory Roles of HOTAIR in cis and trans

B. Lenhard, F. Müller, P. Mydel, 2020, iScience.

Cooperation of sonic hedgehog enhancers in midline expression.

F. Müller, U. Strähle, S. Rastegar, 2007, Developmental biology.

Targeted transgene integration overcomes variability of position effects in zebrafish

E. Stupka, D. Balciunas, I. Miguel-Escalada, 2014, Development.

single nucleotide resolution during vertebrate embryogenesis Dynamic regulation of the transcription initiation landscape at Material Supplemental

E. Stupka, Rehab F. Abdelhamid, A. Suzuki, 2013 .

Description of embryonic development of spotted green pufferfish (Tetraodon nigroviridis).

F. Müller, F. Loosli, H. Roest Crollius, 2014, Zebrafish.

Hedgehog signaling patterns the outgrowth of unpaired skeletal appendages in zebrafish

Uwe Strähle, Yavor Hadzhiev, Ferenc Müller, 2007, BMC Developmental Biology.

Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish

Juan M. Vaquerizas, Anne E. Eagle, Piotr J. Balwierz, 2021 .

A cell cycle-coordinated Polymerase II transcription compartment encompasses gene expression before global genome activation

Haseeb K. Qureshi, G. Hutvagner, F. Müller, 2019, Nature Communications.

Two independent transcription initiation codes overlap on vertebrate core promoters

Nan Li, Boris Lenhard, Piero Carninci, 2014, Nature.

Intraovarian transplantation of stage I-II follicles results in viable zebrafish embryos.

F. Müller, Yavor Hadzhiev, B. Urbányi, 2010, The International journal of developmental biology.

The words of the regulatory code are arranged in a variable manner in highly conserved enhancers.

T. Dickmeis, J. Nicod, U. Strähle, 2008, Developmental biology.

Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization

Juan M. Vaquerizas, Piotr J. Balwierz, B. Cairns, 2021, Developmental cell.

Expression and knockdown of zebrafish folliculin suggests requirement for embryonic brain morphogenesis

Yavor Hadzhiev, Nan Li, E. Maher, 2016, BMC Developmental Biology.

TBP2, a Vertebrate-Specific Member of the TBP Family, Is Required in Embryonic Development of Zebrafish

Yavor Hadzhiev, Ferenc Müller, László Orbán, 2004, Current Biology.

The miR-430 locus with extreme promoter density is a transcription body organizer, which facilitates long range regulation in zygotic genome activation

S. Gustincich, F. Müller, S. Burgess, 2021, bioRxiv.

Conservation of shh cis-regulatory architecture of the coelacanth is consistent with its ancestral phylogenetic position

C. Amemiya, A. Meyer, F. Müller, 2010, EvoDevo.

Visualization of Transcriptional Activity in Early Zebrafish Primordial Germ Cells.

F. Müller, Yavor Hadzhiev, Aleksandra Jasiulewicz, 2021, Methods in molecular biology.

Testing of Cis-Regulatory Elements by Targeted Transgene Integration in Zebrafish Using PhiC31 Integrase.

D. Balciunas, I. Miguel-Escalada, F. Müller, 2016, Methods in molecular biology.

Automated feature detection and imaging for high-resolution screening of zebrafish embryos.

Ravindra Peravali, Urban Liebel, Yavor Hadzhiev, 2011, BioTechniques.

A lightweight segmentation and lineage tracking tool for noisy, low frame rate 4D fluorescence microscopy data

Yavor Hadzhiev, Ferenc Müller, Haseeb K. Qureshi, 2020, bioRxiv.

University of Birmingham Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs.

Piero Carninci, B. Lenhard, F. Müller, 2015 .

Loss-of-function mutations in RAB18 cause Warburg micro syndrome.

Mark T. Handley, J. Graham, F. Müller, 2011, American journal of human genetics.

New approach methods to assess developmental and adult neurotoxicity for regulatory use: a PARC work package 5 project

O. Spjuth, Selma Hurem, J. Lyche, 2024, Frontiers in toxicology.