P. Shah

发表

A Comprehensive Map of Insulator Elements for the Drosophila Genome

Christopher D. Brown, Parantu K. Shah, Carolyn A. Morrison, 2010, PLoS genetics.

A cis-regulatory map of the Drosophila genome

Robert L. Grossman, Mark Gerstein, Manolis Kellis, 2011, Nature.

Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression

Parantu K. Shah, K. White, O. Olopade, 2008, Molecular systems biology.

The SMARCA2/4 ATPase Domain Surpasses the Bromodomain as a Drug Target in SWI/SNF-Mutant Cancers: Insights from cDNA Rescue and PFI-3 Inhibitor Studies.

Parantu K. Shah, A. Protopopov, B. Vangamudi, 2015, Cancer research.

canEvolve: A Web Portal for Integrative Oncogenomics

Parantu K. Shah, N. Munshi, Cheng Li, 2013, PloS one.

Genome analysis Evolutionary analysis of enzymes using Chisel

Alexis A. Rodriguez, N. Maltsev, M. Syed, 2007 .

Parantu K. Shah, P. Bork, R. Russell, 2005, Protein science : a publication of the Protein Society.

Gene Expression Profile Alone Is Inadequate In Predicting Complete Response In Multiple Myeloma

Yi Li, Parantu K. Shah, Cheng Li, 2014, Leukemia.

Integrative analysis of gene and miRNA expression profiles with transcription factor–miRNA feed-forward loops identifies regulators in human cancers

Parantu K. Shah, Hongbin Ji, Vikas Misra, 2012, Nucleic acids research.

The shaping and functional consequences of the dosage effect landscape in multiple myeloma

Parantu K. Shah, N. Munshi, Cheng Li, 2013, BMC Genomics.

Transcription factor-pathway co-expression analysis reveals cooperation between SP1 and ESR1 on dysregulating cell cycle arrest in non-hyperdiploid multiple myeloma

Parantu K. Shah, Yong Zhang, N. Munshi, 2013, Leukemia.

Genetic events that limit the efficacy of MEK and RTK inhibitor therapies in a mouse model of KRAS-driven pancreatic cancer.

Parantu K. Shah, Nora S. Sanchez, G. Mills, 2015, Cancer research.

A small molecule inhibitor of ubiquitin-specific protease-7 induces apoptosis in multiple myeloma cells and overcomes bortezomib resistance.

Parantu K. Shah, N. Munshi, P. Richardson, 2012, Cancer cell.

Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families.

Peer Bork, Lokesh P. Tripathi, Lars Juhl Jensen, 2008, Gene.

TRIM28 and Interacting KRAB-ZNFs Control Self-Renewal of Human Pluripotent Stem Cells through Epigenetic Repression of Pro-differentiation Genes

Parantu K. Shah, M. Esteller, H. Heyn, 2017, Stem cell reports.

Lessons from a decade of integrating cancer copy number alterations with gene expression profiles

Cheng Li, Parantu K. Shah, Norman Huang, 2012, Briefings Bioinform..

Applications of machine learning in drug discovery and development

Parantu K. Shah, I. Dunham, A. Madabhushi, 2019, Nature Reviews Drug Discovery.

Computational characterization of multiple Gag-like human proteins.

Parantu K. Shah, P. Bork, T. Doerks, 2006, Trends in genetics : TIG.

In Vivo Functional Platform Targeting Patient-Derived Xenografts Identifies WDR5-Myc Association as a Critical Determinant of Pancreatic Cancer.

Parantu K. Shah, Nora S. Sanchez, L. Chin, 2016, Cell reports.

Avelumab in patients with previously treated metastatic Merkel cell carcinoma: long-term data and biomarker analyses from the single-arm phase 2 JAVELIN Merkel 200 trial

Parantu K. Shah, G. Linette, K. Lewis, 2020, Journal for immunotherapy of cancer.

Determinants of antigenicity and specificity in immune response for protein sequences

Yulong Wang, Cheng Li, Wenjun Wu, 2011, BMC Bioinformatics.

Targeting Poly(ADP-Ribose) Polymerase and the c-Myb–Regulated DNA Damage Response Pathway in Castration-Resistant Prostate Cancer

Parantu K. Shah, B. Broom, Wenjun Chang, 2014, Science Signaling.

Computational characterisation of cancer molecular profiles derived using next generation sequencing

Urszula Oleksiewicz, Parantu K. Shah, Katarzyna Tomczak, 2015, Contemporary oncology.

Evolutionary analysis of enzymes using Chisel

Natalia Maltsev, Parantu K. Shah, Tanuja Bompada, 2007, Bioinform..

Structural determinants of binding and specificity in transforming growth factor–receptor interactions

Cristina Marino Buslje, Parantu K. Shah, R. Sowdhamini, 2001, Proteins.

TRIM24 links glucose metabolism with transformation of human mammary epithelial cells

Parantu K. Shah, M. Stampfer, S. Jiang, 2014, Oncogene.

HLA-A*03 and response to immune checkpoint blockade in cancer: an epidemiological biomarker study.

Parantu K. Shah, M. Carrington, X. Mu, 2021, The Lancet. Oncology.

Flynet: a genomic resource for Drosophila melanogaster transcriptional regulatory networks

Robert L. Grossman, Jia Chen, Feng Tian, 2009, Bioinform..

Classify Hyperdiploidy Status of Multiple Myeloma Patients Using Gene Expression Profiles

Parantu K. Shah, Yong Zhang, N. Munshi, 2013, PloS one.

Extraction of Transcript Diversity from Scientific Literature

Peer Bork, Lars Juhl Jensen, Parantu K. Shah, 2005, PLoS Comput. Biol..

First-line avelumab in a cohort of 116 patients with metastatic Merkel cell carcinoma (JAVELIN Merkel 200): primary and biomarker analyses of a phase II study

Parantu K. Shah, J. Grob, C. Lebbé, 2021, Journal for ImmunoTherapy of Cancer.

Biological and Therapeutic Potential of Mir-155, 585 and Let-7f in Myeloma in Vitro and In Vivo.

D. Carrasco, N. Munshi, P. Moreau, 2009 .

A novel MSH2 germline mutation in homozygous state in two brothers with colorectal cancers diagnosed at the age of 11 and 12 years

J. Rüschoff, H. Schackert, J. Epplen, 2006, American journal of medical genetics. Part A.

TRIM28 multi-domain protein regulates cancer stem cell population in breast tumor development

Parantu K. Shah, K. Tomczak, Patrycja Czerwińska, 2016, Oncotarget.

The dChip survival analysis module for microarray data

Parantu K. Shah, Sophia Adamia, Aimin Yan, 2011, BMC Bioinformatics.

Cross-talk between chromatin acetylation and SUMOylation of tripartite motif–containing protein 24 (TRIM24) impacts cell adhesion

Parantu K. Shah, M. Barton, J. Andersen, 2018, The Journal of Biological Chemistry.

PASBio: predicate-argument structures for event extraction in molecular biology

Nigel Collier, Parantu K. Shah, Tuangthong Wattarujeekrit, 2004, BMC Bioinformatics.

Information extraction from full text scientific articles: Where are the keywords?

Miguel A. Andrade-Navarro, Peer Bork, Carolina Perez-Iratxeta, 2003, BMC Bioinformatics.

Whole Genome Paired End Sequencing Identifies Genomic Evolution in Myeloma.

P. Campbell, P. Stephens, N. Munshi, 2009 .