C. Ellison

发表

Nanopore sequencing and Hi-C scaffolding provide insight into the evolutionary dynamics of transposable elements and piRNA production in wild strains of Drosophila melanogaster

C. Ellison, Weihuan Cao, 2019, Nucleic acids research.

3D genome evolution and reorganization in the Drosophila melanogaster species group

C. Ellison, Weihuan Cao, Nicole S. Torosin, 2020, bioRxiv.

3D genome evolution and reorganization in the Drosophila melanogaster species group

C. Ellison, Weihuan Cao, Nicole S. Torosin, 2020, bioRxiv.

3D genome evolution and reorganization in the Drosophila melanogaster species group

C. Ellison, Weihuan Cao, Nicole S. Torosin, 2020, PLoS genetics.

The Epigenome of Evolving Drosophila Neo-Sex Chromosomes: Dosage Compensation and Heterochromatin Formation

A. Alekseyenko, A. Gorchakov, Qi Zhou, 2013, PLoS biology.

The Drosophila TART transposon manipulates the piRNA pathway as a counter-defense strategy to limit host silencing

Meenakshi Kagda, C. Ellison, Weihuan Cao, 2020, bioRxiv.

Population genomics and local adaptation in wild isolates of a model microbial eukaryote

Rachel B. Brem, D. Kowbel, R. Brem, 2011, Proceedings of the National Academy of Sciences.

Adenine Methylation in Drosophila Is Associated with the Tissue-Specific Expression of Developmental and Regulatory Genes

C. Ellison, Weihuan Cao, Kinnary A. Shah, 2019, G3: Genes, Genomes, Genetics.

Identification of Transcription Factors Regulating SARS-CoV-2 Entry Genes in the Intestine

C. Ellison, L. Chen, M. Verzi, 2020, Cellular and Molecular Gastroenterology and Hepatology.

Sex-specific variation in R-loop formation in Drosophila melanogaster

T. Stanek, C. Ellison, Weihuan Cao, 2022, PLoS genetics.

Massive Changes in Genome Architecture Accompany the Transition to Self-Fertility in the Filamentous Fungus Neurospora tetrasperma

Alla Lapidus, Jason E. Stajich, Andrea Aerts, 2011, Genetics.

Discovering Functions of Unannotated Genes from a Transcriptome Survey of Wild Fungal Isolates

Rachel B. Brem, D. Kowbel, R. Brem, 2014, mBio.

Rampant cryptic sex chromosome drive in Drosophila

C. Ellison, Emily L. Landeen, D. Bachtrog, 2018 .

Mode and Tempo of 3D Genome Evolution in Drosophila

C. Ellison, Weihuan Cao, Nicole S. Torosin, 2022, Molecular biology and evolution.

Recurrent gene co-amplification on Drosophila X and Y chromosomes

C. Ellison, D. Bachtrog, 2019, PLoS genetics.

Clonal reproduction in fungi

S. Branco, John W. Taylor, C. Ellison, 2015, Proceedings of the National Academy of Sciences.

A transposon expression burst accompanies the activation of Y-chromosome fertility genes during Drosophila spermatogenesis

C. Ellison, Weihuan Cao, Matthew A. Lawlor, 2021, Nature Communications.

Telomeric TART elements target the piRNA machinery in Drosophila

Meenakshi Kagda, C. Ellison, Weihuan Cao, 2020, PLoS biology.

Dosage Compensation via Transposable Element Mediated Rewiring of a Regulatory Network

C. Ellison, D. Bachtrog, 2013, Science.

Continental‐level population differentiation and environmental adaptation in the mushroom Suillus brevipes

K. Peay, R. Vilgalys, T. Bruns, 2017, Molecular ecology.

Genetic isolation between two recently diverged populations of a symbiotic fungus

I. Grigoriev, A. Lipzen, K. Peay, 2015, Molecular ecology.

Non-allelic gene conversion enables rapid evolutionary change at multiple regulatory sites encoded by transposable elements

C. Ellison, D. Bachtrog, 2015, eLife.

Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila.

P. Park, M. Kuroda, Shouyong Peng, 2013, Genes & development.

Mushrooms: Morphological complexity in the fungi

C. Ellison, J. Taylor, John W. Taylor, 2010, Proceedings of the National Academy of Sciences.

The nuclear receptor HNF4 drives a brush border gene program conserved across murine intestine, kidney, and embryonic yolk sac

C. Ellison, Weihuan Cao, M. Verzi, 2021, Nature Communications.

Contingency in the convergent evolution of a regulatory network: Dosage compensation in Drosophila

C. Ellison, D. Bachtrog, 2018, bioRxiv.

Phylogenetic relationships of Loxosceles and Sicarius spiders are consistent with Western Gondwanan vicariance.

C. Ellison, R. P. Duncan, G. Binford, 2008, Molecular phylogenetics and evolution.

Recurrent gene amplification on Drosophila Y chromosomes suggests cryptic sex chromosome drive is common on young sex chromosomes

C. Ellison, D. Bachtrog, 2018, bioRxiv.

Three-dimensional interactions between enhancers and promoters during intestinal differentiation depend upon HNF4

C. Ellison, Weihuan Cao, M. Verzi, 2021, Cell reports.

Evolutionary genomics of divergence and adaptation within the model fungi Neurospora crassa and Neurospora tetrasperma

C. Ellison, 2011 .

Structural Variation among Wild and Industrial Strains of Penicillium chrysogenum

Rachel B. Brem, L. Pachter, M. Eisen, 2014, PloS one.

A burst of transposon expression accompanies the activation of Y chromosome fertility genes during Drosophila spermatogenesis

C. Ellison, Weihuan Cao, Matthew A. Lawlor, 2021, bioRxiv.

Evolutionary dynamics between transposable elements and their host genomes: mechanisms of suppression and escape.

C. Ellison, Matthew A. Lawlor, 2023, Current opinion in genetics & development.

Transposon Extermination Reveals Their Adaptive Fitness Contribution

M. Zaratiegui, C. Ellison, Weihuan Cao, 2021, bioRxiv.

Long-read genome assemblies for the study of chromosome expansion: Drosophila kikkawai, Drosophila takahashii, Drosophila bipectinata, and Drosophila ananassae

S. Elgin, L. Reed, C. Ellison, 2023, G3.

Long-read genome assemblies for the study of chromosome expansion: Drosophila kikkawai, Drosophila takahashii, Drosophila bipectinata, and Drosophila ananassae

S. Elgin, L. Reed, C. Ellison, 2023, bioRxiv.