Johan Reimegård

发表

Evidence for Small RNAs Homologous to Effector-Encoding Genes and Transposable Elements in the Oomycete Phytophthora infestans

S. Whisson, E. Savenkov, A. Avrova, 2012, PloS one.

Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA.

J. Vogel, E. Wagner, Erik Holmqvist, 2005, Genes & development.

Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis

E. Wagner, Erik Holmqvist, U. Römling, 2010, The EMBO journal.

Combined mRNA and protein single cell analysis in a dynamic cellular system using SPARC

M. Friedländer, Marcel Tarbier, Johan Reimegård, 2019, bioRxiv.

MicroRNAs in Amoebozoa: deep sequencing of the small RNA population in the social amoeba Dictyostelium discoideum reveals developmentally regulated microRNAs.

E. Wagner, Johan Reimegård, F. Söderbom, 2012, RNA.

The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway

Victor R. Ambros, E. Gerhart H. Wagner, Wolfgang Nellen, 2007, Nucleic acids research.

Comparative analysis of genome-wide DNA methylation in Neurospora

Johan Reimegård, H. Johannesson, S. Hosseini, 2020, Epigenetics.

Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora

B. Laenen, D. Scofield, Johan Reimegård, 2016, Proceedings of the National Academy of Sciences.

Title: Analysis of allele-specific expression reveals cis-regulatory changes associated with a recent mating system shift and floral adaptation in Capsella Running title: Cis-regulatory evolution in Capsella

Daniel Koenig, D. Scofield, Johan Reimegård, 2015 .

Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly

M. Huss, F. Vezzi, S. Nylin, 2016, BMC Evolutionary Biology.

Early cone-setting in Picea abies var. acrocona

O. Emanuelsson, Johan Reimegård, D. Clapham, 2012 .

Nuclear-specific gene expression in heterokaryons of the filamentous ascomycete Neurospora tetrasperma

J. Mank, Johan Reimegård, H. Johannesson, 2022, Proceedings of the Royal Society B.

Comprehensive interrogation of a Drosophila embryonic patterning network reveals the impact of chromatin state on tissue-specific burst kinetics and RNA Polymerase II promoter-proximal pause release

R. Sandberg, M. Mannervik, Christoph Ziegenhain, 2022, bioRxiv.

The impact of natural selection on the distribution of cis-regulatory variation

B. Laenen, D. Scofield, Johan Reimegård, 2015 .

Spatially resolved transcriptome profiling in model plant species

Andrey Alexeyenko, Chanaka Mannapperuma, Joakim Lundeberg, 2017, Nature Plants.

A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp

Erik Holmqvist, E. Wagner, Cecilia Unoson, 2012, Molecular microbiology.

The Dictyostelium discoideum RNA-dependent RNA polymerase RrpC silences the centromeric retrotransposon DIRS-1 post-transcriptionally and is required for the spreading of RNA silencing signals

O. Emanuelsson, M. Käller, Johan Reimegård, 2013, Nucleic acids research.

Genomic analysis reveals major determinants of cis-regulatory variation in 3 Capsella grandiflora 4 5 6

B. Laenen, D. Scofield, Johan Reimegård, 2016 .

A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart

Joakim Lundeberg, Daniel Fürth, Christer Sylvén, 2019, Cell.

Genome-wide identification of physically clustered genes suggests chromatin-level co-regulation in male reproductive development in Arabidopsis thaliana

Peter Shaw, Naomi Nakayama, Olof Emanuelsson, 2017, Nucleic acids research.

Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas

L. Eichinger, A. Noegel, G. Glöckner, 2020, bioRxiv.

RNA sequencing uncovers antisense RNAs and novel small RNAs in Streptococcus pyogenes

E. Charpentier, Krzysztof Chylinski, Johan Reimegård, 2015, RNA biology.

Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III in Streptococcus pyogenes

E. Charpentier, Johan Reimegård, Estelle Proux-Wéra, 2017, Nucleic acids research.

Massive functional mapping of a 5′-UTR by saturation mutagenesis, phenotypic sorting and deep sequencing

E. Gerhart H. Wagner, Erik Holmqvist, E. Wagner, 2013, Nucleic acids research.

Cis-Regulatory Changes Associated with a Recent Mating System Shift and Floral Adaptation in Capsella

Douglas G. Scofield, Daniel Koenig, D. Scofield, 2015, bioRxiv.

Analysis of allele-specific expression reveals cis-regulatory changes 2 associated with a recent mating system shift and floral adaptation in Capsella 3 4 Running title : Cis-regulatory evolution in Capsella 5 6

Tanja, Daniel Koenig, D. Scofield, 2015 .

Identification and verification of microRNAs by high-throughput sequencing.

M. Käller, Johan Reimegård, F. Söderbom, 2013, Methods in molecular biology.

The role of transposable elements for gene expression in Capsella hybrids and allopolyploids

Douglas G. Scofield, D. Scofield, C. Köhler, 2016, bioRxiv.

A combined approach for single-cell mRNA and intracellular protein expression analysis

M. Friedländer, Johan Reimegård, N. Dahl, 2021, Communications Biology.

A method to map changes in bacterial surface composition induced by regulatory RNAs in Escherichia coli and Staphylococcus aureus.

E. Wagner, F. Vandenesch, S. Boisset, 2014, Biochimie.

Early Cone Setting in Picea abies acrocona Is Associated with Increased Transcriptional Activity of a MADS Box Transcription Factor1[W][OA]

O. Emanuelsson, Johan Reimegård, S. von Arnold, 2012, Plant Physiology.

An Organ-Wide Gene Expression Atlas of the Developing Human Heart

Patrik L. Ståhl, Daniel Fürth, J. Lundeberg, 2018 .

Genetic atlas of hygro-and thermosensory cells in the vinegar fly Drosophila melanogaster

Johan Reimegård, A. Churcher, Anders Enjin, 2023, bioRxiv.

A combined approach for single-cell mRNA and intracellular protein expression analysis

M. Friedländer, Johan Reimegård, N. Dahl, 2021 .

A combined approach for single-cell mRNA and intracellular protein expression analysis.

M. Friedländer, Johan Reimegård, N. Dahl, 2021, Communications biology.

Genome-wide identification of physically clustered genes suggests chromatin-level co-regulation in male reproductive development in Arabidopsis thaliana

O. Emanuelsson, P. Shaw, Johan Reimegård, 2017, Nucleic acids research.

Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network

R. Sandberg, M. Mannervik, Johan Reimegård, 2024, Genome biology.