J. Beaver

A Genome-Wide Gene Function Prediction Resource for Drosophila melanogaster

Marc Vidal, Frederick P. Roth, Michael E. Cusick, 2010, PloS one.

Next generation software for functional trend analysis

Frederick P. Roth, Gabriel F. Berriz, John E. Beaver, 2009, Bioinform..

Binding MOAD, a high-quality protein–ligand database

Richard D. Smith, Heather A. Carlson, John E. Beaver, 2007, Nucleic Acids Res..

Immune epitope database analysis resource (IEDB-AR)

Qing Zhang, Philip E. Bourne, Morten Nielsen, 2008, Nucleic Acids Res..

Con-Struct Map: a comparative contact map analysis tool

Philip E. Bourne, John E. Beaver, Eric D. Scheeff, 2007, Bioinform..

EpitopeViewer: a Java application for the visualization and analysis of immune epitopes in the Immune Epitope Database and Analysis Resource (IEDB)

Julia V Ponomarenko, Philip E Bourne, John E Beaver, 2007, Immunome research.

Novel cardiovascular gene functions revealed via systematic phenotype prediction in zebrafish

Frederick P. Roth, Quaid Morris, Khalid Zuberi, 2014, Development.

A Resource of Quantitative Functional Annotation for Homo sapiens Genes

Judith A. Blake, Weidong Tian, Frederick P. Roth, 2012, G3: Genes | Genomes | Genetics.