Thomas Eng

发表

parameters of origin activation and repression follicle cells : Drosophila Integrative analysis of gene amplification in Material Supplemental

D. MacAlpine, J. Nordman, T. Orr-Weaver, 2011 .

Adaptive laboratory evolution of Pseudomonas putida KT2440 improves p-coumaric and ferulic acid catabolism and tolerance

Adam M. Feist, Markus J. Herrgård, B. Simmons, 2020, Metabolic engineering communications.

Ubiquitin-Dependent Control of Class II MHC Localization Is Dispensable for Antigen Presentation and Antibody Production

Annette M. McGehee, O. Kirak, H. Ploegh, 2011, PloS one.

Generation of ionic liquid tolerant Pseudomonas putida KT2440 strains via adaptive laboratory evolution

Adam M. Feist, Connor A. Olson, B. Palsson, 2020, Green Chemistry.

Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC

L. Blank, C. Petzold, A. Mukhopadhyay, 2018, Microbial Cell Factories.

Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale

Thomas Eng, Jay D Keasling, Christopher J Petzold, 2020, Nature Communications.

Engineering Corynebacterium glutamicum to produce the biogasoline isopentenol from plant biomass hydrolysates

B. Simmons, C. Petzold, A. Mukhopadhyay, 2019, Biotechnology for Biofuels.

Iron Supplementation Eliminates Antagonistic Interactions Between Root-Associated Bacteria

A. Deutschbauer, M. Bissell, A. Mukhopadhyay, 2020, bioRxiv.

Iron Supplementation Eliminates Antagonistic Interactions Between Root-Associated Bacteria

James B. Brown, A. Deutschbauer, M. Bissell, 2020, Frontiers in Microbiology.

Genome-scale metabolic rewiring to achieve predictable titers rates and yield of a non-native product at scale

J. Keasling, C. Petzold, A. Mukhopadhyay, 2020, bioRxiv.

Complete Genome Sequence of Agrobacterium sp. Strain 33MFTa1.1, Isolated from Thlaspi arvense Roots

James B. Brown, S. Tringe, S. Celniker, 2019, Microbiology Resource Announcements.

Tuning a high performing multiplexed-CRISPRi Pseudomonas putida strain to further enhance indigoidine production

Yinjie J. Tang, Young-Mo Kim, S. Baker, 2022, Metabolic engineering communications.

Photobiological production of high-value pigments via compartmentalized co-cultures using Ca-alginate hydrogels

Yinjie J. Tang, A. Mukhopadhyay, Young-Shin Jun, 2022, Scientific reports.

Engineering Robust Production Microbes for Large-Scale Cultivation.

Thomas Eng, Maren Wehrs, Aindrila Mukhopadhyay, 2019, Trends in microbiology.

Rhizobacteria Mediate the Phytotoxicity of a Range of Biorefinery‐Relevant Compounds

James B. Brown, M. Bissell, K. Wan, 2019, Environmental toxicology and chemistry.

Developmental control of gene copy number by repression of replication initiation and fork progression.

G. Bell, D. MacAlpine, M. Eaton, 2012, Genome research.

replication initiation and fork progression Developmental control of gene copy number by repression of Material Supplemental

G. Bell, D. MacAlpine, M. Eaton, 2011 .

A Conserved Domain in the Scc3 Subunit of Cohesin Mediates the Interaction with Both Mcd1 and the Cohesin Loader Complex

V. Guacci, D. Koshland, Thomas Eng, 2015, PLoS genetics.

Genomics Characterization of an Engineered Corynebacterium glutamicum in Bioreactor Cultivation Under Ionic Liquid Stress

B. Simmons, A. Mukhopadhyay, N. Sun, 2021, Frontiers in bioengineering and biotechnology.

Genomics Characterization of an engineered Corynebacterium glutamicum in Bioreactor Cultivation under Ionic Liquid Stress

B. Simmons, N. Sun, A. Mukhopadhyay, 2021, bioRxiv.

Interallelic complementation provides functional evidence for cohesin–cohesin interactions on DNA

V. Guacci, D. Koshland, Thomas Eng, 2015, Molecular biology of the cell.

ROCC, a conserved region in cohesin's Mcd1 subunit, is essential for the proper regulation of the maintenance of cohesion and establishment of condensation

V. Guacci, D. Koshland, Thomas Eng, 2014, Molecular biology of the cell.

Engineering Pseudomonas putida for efficient aromatic conversion to bioproduct using high throughput screening in a bioreactor.

A. Deutschbauer, A. Mukhopadhyay, Deepti Tanjore, 2021, Metabolic engineering.

Biosystem design of Corynebacterium glutamicum for bioproduction.

Yinjie J. Tang, M. Koffas, A. Mukhopadhyay, 2022, Current opinion in biotechnology.

High Throughput Fitness Profiling Reveals Loss Of GacS-GacA Regulation Improves Indigoidine Production In Pseudomonas putida

A. Deutschbauer, A. Mukhopadhyay, Deepti Tanjore, 2021, bioRxiv.

Integrative analysis of gene amplification in Drosophila follicle cells: parameters of origin activation and repression.

D. MacAlpine, J. Nordman, T. Orr-Weaver, 2011, Genes & development.

Developmental control of the DNA replication and transcription programs.

D. MacAlpine, J. Nordman, T. Orr-Weaver, 2011, Genome research.

Improving membrane protein expression and function using genomic edits

V. Chubukov, A. Mukhopadhyay, Thomas Eng, 2017, Scientific Reports.

Production of tetra-methylpyrazine using engineered Corynebacterium glutamicum

C. Petzold, A. Mukhopadhyay, Yan Chen, 2019, Metabolic engineering communications.

Development of genetic tools for heterologous protein expression in a pentose‐utilizing environmental isolate of Pseudomonas putida

B. Simmons, S. Singer, Y. Yoshikuni, 2023, Microbial biotechnology.

Optimizing a High Performing Multiplex-CRISPRi P. putida Strain with Integrated Metabolomics and 13C-Metabolic Flux Analyses

Yinjie J. Tang, S. Baker, A. Mukhopadhyay, 2021, bioRxiv.

Ensemble and Iterative Engineering for Maximized Bioconversion to the Blue Pigment, Indigoidine from Non-Canonical Sustainable Carbon Sources

J. Keasling, C. Larabell, B. Simmons, 2023, bioRxiv.