C. G. Schrago

发表

Functional Copies of the Mst77F Gene on the Y Chromosome of Drosophila melanogaster

A. B. Carvalho, F. Krsticevic, Henrique L Santos, 2010, Genetics.

The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes

Diego Mauricio Riaño-Pachón, M. Vincentz, B. Mueller‐Roeber, 2008, PloS one.

Detection and sequencing of Zika virus from amniotic fluid of fetuses with microcephaly in Brazil: a case study.

Carlos G Schrago, Amilcar Tanuri, F. Thompson, 2016, The Lancet. Infectious diseases.

Conservation analysis and decomposition of residue correlation networks in the phospholipase A2 superfamily (PLA2s): Insights into the structure‐function relationships of snake venom toxins

L. Bleicher, C. G. Schrago, A. Oliveira, 2018, Toxicon : official journal of the International Society on Toxinology.

On the time scale of New World primate diversification.

Carlos G Schrago, C. G. Schrago, 2007, American journal of physical anthropology.

Comparative evaluation of maximum parsimony and Bayesian phylogenetic reconstruction using empirical morphological data

Barbara O. Aguiar, C. G. Schrago, B. Mello, 2018, Journal of evolutionary biology.

Expanded phylogenetic analyses of the class Heterotrichea (Ciliophora, Postciliodesmatophora) using five molecular markers and morphological data.

C. G. Schrago, M. Schlegel, N. Fernandes, 2016, Molecular phylogenetics and evolution.

Comparative evolutionary epidemiology of dengue virus serotypes.

R. L. Costa, C. G. Schrago, C. M. Voloch, 2012, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Characterization of Juquitiba Virus in Oligoryzomys fornesi from Brazilian Cerrado

C. Bonvicino, P. D'Andrea, C. G. Schrago, 2014, Viruses.

1 Evolution of Philodendron ( Araceae ) species along Neotropical biomes 2 3

C. M. Sakuragui, C. G. Schrago, Letícia Loss-Oliveira, 2018 .

Evolution of Philodendron (Araceae) species in Neotropical biomes

C. G. Schrago, Letícia Loss-Oliveira, M. L. Soares, 2016, PeerJ.

Positive Selection on HIV Accessory Proteins and the Analysis of Molecular Adaptation After Interspecies Transmission

M. Soares, C. G. Schrago, A. E. Soares, 2008, Journal of Molecular Evolution.

The Influence of Taxon Sampling and Tree Shape on Molecular Dating: An Empirical Example from Mammalian Mitochondrial Genomes

C. G. Schrago, A. E. Soares, 2012, Bioinformatics and biology insights.

Evolution of the B3 DNA Binding Superfamily: New Insights into REM Family Gene Diversification

R. Couñago, E. Romanel, M. Alves-Ferreira, 2009, PloS one.

The Estimated Pacemaker for Great Apes Supports the Hominoid Slowdown Hypothesis

C. G. Schrago, B. Mello, 2019, Evolutionary bioinformatics online.

The range of sampling times affects Zika virus evolutionary rates and divergence times

C. G. Schrago, Lucia P Barzilai, 2019, Archives of Virology.

New bunya-like viruses: Highlighting their relations.

C. G. Schrago, A. Guterres, R. C. de Oliveira, 2017, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

A multigene timescale and diversification dynamics of Ciliophora evolution.

C. G. Schrago, N. Fernandes, 2019, Molecular phylogenetics and evolution.

Large ancestral effective population size explains the difficult phylogenetic placement of owl monkeys

H. Seuánez, C. G. Schrago, 2019, American journal of primatology.

Multispecies Coalescent Analysis of the Early Diversification of Neotropical Primates: Phylogenetic Inference under Strong Gene Trees/Species Tree Conflict

C. Bonvicino, H. Seuánez, C. Furtado, 2014, Genome biology and evolution.

The origin of South American HIV-1 subtype C: lack of evidence for a Mozambican ancestry.

M. Soares, C. G. Schrago, Rachel Fontella, 2009, AIDS.

Hantavirus pulmonary syndrome (HPS) is caused by the emerging rodent-borne viruses of the genus Hantavi-

C. Bonvicino, C. G. Schrago, A. Guterres, 2012 .

Positive selection along the evolution of primate mitogenomes.

H. Seuánez, C. Furtado, C. G. Schrago, 2013, Mitochondrion.

Recognition of the genus Thaumatophyllum Schott − formerly Philodendron subg. Meconostigma (Araceae) − based on molecular and morphological evidence

L. S. Calazans, C. M. Sakuragui, C. G. Schrago, 2018, PhytoKeys.

Analysis of Adaptive Evolution in Lyssavirus Genomes Reveals Pervasive Diversifying Selection during Species Diversification

C. G. Schrago, B. Mello, C. M. Voloch, 2014, Viruses.

Genomic basis of neotropical primate adaptations.

C. G. Schrago, 2022, Proceedings of the National Academy of Sciences of the United States of America.

Redescription and Phylogenetic Position of Condylostoma arenarium Spiegel, 1926 (Ciliophora, Heterotrichea) from Guanabara Bay, Brazil

C. G. Schrago, N. Fernandes, R. Dias, 2015, The Journal of eukaryotic microbiology.

Assessing the relative performance of fast molecular dating methods for phylogenomic data

C. G. Schrago, B. Mello, Fernanda P. Costa, 2022, BMC Genomics.

Comparative evaluation of macroevolutionary regimes of Ruminantia and selected mammalian lineages

C. G. Schrago, B. Mello, M. Rossi, 2018 .

Global alteration of microRNAs and transposon-derived small RNAs in cotton (Gossypium hirsutum) during Cotton leafroll dwarf polerovirus (CLRDV) infection

L. Farinelli, E. Romanel, C. G. Schrago, 2012, Plant Molecular Biology.

Testing Synchrony in Historical Biogeography: The Case of New World Primates and Hystricognathi Rodents

Barbara O. Aguiar, C. G. Schrago, Letícia Loss-Oliveira, 2012, Evolutionary bioinformatics online.

Sigmodontine rodents diversified in South America prior to the complete rise of the Panamanian Isthmus

C. G. Schrago, B. Mello, C. M. Voloch, 2014 .

Phylogenetic Status and Timescale for the Diversification of Steno and Sotalia Dolphins

A. Solé-Cava, C. G. Schrago, V. D. da Silva, 2011, PloS one.

Employing statistical learning to derive species‐level genetic diversity for mammalian species

C. G. Schrago, B. Mello, 2020 .

Phylogenetic analysis of the ATP-binding cassette proteins suggests a new ABC protein subfamily J in Aedes aegypti (Diptera: Culicidae)

A. C. Melo, C. G. Schrago, T. Salles, 2020, BMC Genomics.

Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles.

C. G. Schrago, J. Sterli, A. Pereira, 2017, Molecular phylogenetics and evolution.

Molecular evolution of α4 integrin binding site to lentiviral envelope proteins in new world primates.

M. Soares, H. Seuánez, C. G. Schrago, 2012, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Evolution of TRIM5alpha B30.2 (SPRY) domain in New World primates.

M. Soares, C. Bonvicino, M. A. Moreira, 2010, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Discovery of Novel Hemocyanin-Like Genes in Metazoans

C. G. Schrago, K. Halanych, C. Coates, 2018, The Biological Bulletin.

Broad Phylogenetic Occurrence of the Oxygen-Binding Hemerythrins in Bilaterians

C. G. Schrago, K. Halanych, E. Costa-Paiva, 2017, Genome biology and evolution.

Discovery and evolution of novel hemerythrin genes in annelid worms

C. G. Schrago, K. Halanych, Nathan V. Whelan, 2017, BMC Evolutionary Biology.

Coalescent-based phylogenetic inference from genes with unequivocal historical signal suggests a polytomy at the root of the placental mammal tree of life

C. G. Schrago, F. Moreira, 2018, bioRxiv.

Data partitioning and correction for ascertainment bias reduce the uncertainty of placental mammal divergence times inferred from the morphological clock

Ian V. Caldas, C. G. Schrago, 2019, Ecology and evolution.

Boronated tartrolon antibiotic produced by symbiotic cellulose-degrading bacteria in shipworm gills

C. A. Soares, Andrew W. Han, A. Hanora, 2013, Proceedings of the National Academy of Sciences of the United States of America.

Appropriate Assignment of Fossil Calibration Information Minimizes the Difference between Phylogenetic and Pedigree Mutation Rates in Humans

C. G. Schrago, E. Costa-Paiva, Renata T. Capellão, 2018, Life.

Incomplete lineage sorting impacts the inference of macroevolutionary regimes from molecular phylogenies when concatenation is employed: An analysis based on Cetacea

C. G. Schrago, A. Pereira, Anieli G. Pereira, 2018, Ecology and evolution.

The limiting distribution of the effective population size of the ancestor of humans and chimpanzees.

C. G. Schrago, 2014, Journal of theoretical biology.

The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages.

C. G. Schrago, A. E. Soares, 2015, Journal of theoretical biology.

Estimation of the ancestral effective population sizes of African great apes under different selection regimes

C. G. Schrago, 2014, Genetica.

Performance of genomic data sets on the estimation of the divergence time of New World and Old World anthropoids.

C. G. Schrago, C. M. Voloch, 2014, Genetics and molecular research : GMR.

Assignment of Calibration Information to Deeper Phylogenetic Nodes is More Effective in Obtaining Precise and Accurate Divergence Time Estimates

C. G. Schrago, B. Mello, 2014, Evolutionary bioinformatics online.

The effective population sizes of the anthropoid ancestors of the human-chimpanzee lineage provide insights on the historical biogeography of the great apes.

C. G. Schrago, 2014, Molecular biology and evolution.

The precision of the hominid timescale estimated by relaxed clock methods

C. G. Schrago, C. M. Voloch, 2013, Journal of evolutionary biology.

Conventional Simulation of Biological Sequences Leads to a Biased Assessment of Multi-Loci Phylogenetic Analysis

Carlos G. Schrago, Barbara O. Aguiar, C. G. Schrago, 2013, Evolutionary bioinformatics online.

Phylogeny and chronology of the major lineages of New World hystricognath rodents: insights on the biogeography of the Eocene/Oligocene arrival of mammals in South America

C. G. Schrago, C. M. Voloch, Letícia Loss-Oliveira, 2013, BMC Research Notes.

Impact of the Partitioning Scheme on Divergence Times Inferred from Mammalian Genomic Data Sets

Carlos G. Schrago, Carolina M. Voloch, C. G. Schrago, 2012, Evolutionary bioinformatics online.

Impact of long‐term chromosomal shuffling on the multispecies coalescent analysis of two anthropoid primate lineages

H. Seuánez, C. Furtado, C. G. Schrago, 2017, Ecology and evolution.

Combining fossil and molecular data to date the diversification of New World Primates

C. G. Schrago, B. Mello, A. E. Soares, 2013, Journal of evolutionary biology.

Timing the origin of New World monkeys.

C. Russo, C. G. Schrago, 2003, Molecular biology and evolution.

Analysis of differential selective forces acting on the coat protein (P3) of the plant virus family Luteoviridae.

C. G. Schrago, R. Corrêa, Marina W Torres, 2005, Genetics and molecular research : GMR.

Arrival and diversification of mabuyine skinks (Squamata: Scincidae) in the Neotropics based on a fossil-calibrated timetree

C. G. Schrago, A. Pereira, Anieli G. Pereira, 2017, PeerJ.

Evolutionary analysis of Chironius snakes unveils cryptic diversity and provides clues to diversification in the Neotropics.

D. Rödder, C. G. Schrago, Letícia Loss-Oliveira, 2017, Molecular phylogenetics and evolution.

Long-Read Single Molecule Sequencing to Resolve Tandem Gene Copies: The Mst77Y Region on the Drosophila melanogaster Y Chromosome

Carlos G Schrago, A. B. Carvalho, F. Krsticevic, 2015, G3: Genes, Genomes, Genetics.

The Use of Bioinformatics for Studying HIV Evolutionary and Epidemiological History in South America

M. Soares, C. G. Schrago, G. Bello, 2011, AIDS research and treatment.

Evaluating DNA evidence in a genetically complex population.

D. Balding, C. G. Schrago, R. Moura-Neto, 2018, Forensic science international. Genetics.

Challenges in estimating virus divergence times in short epidemic timescales with special reference to the evolution of SARS-CoV-2 pandemic.

C. G. Schrago, Lucia P Barzilai, 2021, Genetics and molecular biology.

Characterization and comparative analysis of a simian foamy virus complete genome isolated from Brazilian capuchin monkeys.

M. Soares, C. G. Schrago, A. F. Santos, 2015, Virus research.

On the origin of HIV-1 subtype C in South America

M. Soares, C. G. Schrago, Rachel Fontella, 2008, AIDS.

Geological Changes of the Americas and their Influence on the Diversification of the Neotropical Kissing Bugs (Hemiptera: Reduviidae: Triatominae)

C. G. Schrago, C. Galvão, S. A. Justi, 2016, PLoS neglected tropical diseases.

Survey for positively selected coding regions in the genome of the hematophagous tsetse fly Glossina morsitans identifies candidate genes associated with feeding habits and embryonic development

C. G. Schrago, Lucas Freitas, R. Mesquita, 2020, Genetics and molecular biology.

Complete genome sequences of two new virus isolates associated with cotton blue disease resistance breaking in Brazil

J. Belot, E. Romanel, C. G. Schrago, 2015, Archives of Virology.

Multispecies coalescent analysis confirms standing phylogenetic instability in Hexapoda

C. G. Schrago, B. Mello, Lucas Freitas, 2018, Journal of evolutionary biology.

Newly Discovered Occurrences and Gene Tree of the Extracellular Globins and Linker Chains from the Giant Hexagonal Bilayer Hemoglobin in Metazoans

C. G. Schrago, K. Halanych, C. Coates, 2019, Genome biology and evolution.

Molecular characterization of BK polyomavirus subtypes in renal transplant recipients in Brazil

C. G. Schrago, M. Zalis, R. T. Gonçalves, 2011, Journal of medical virology.

Evolution of Philodendron (Araceae) species along Neotropical biomes

C. G. Schrago, Letícia Loss-Oliveira, M. L. Soares, 2016 .

Floral Evolution of Philodendron Subgenus Meconostigma (Araceae)

L. S. Calazans, C. M. Sakuragui, C. G. Schrago, 2014, PloS one.

CCR5 chemokine receptor gene evolution in New World monkeys (Platyrrhini, Primates): implication on resistance to lentiviruses.

M. Soares, A. Tanuri, H. Seuánez, 2005, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Epidemiologic and Evolutionary Trends of HIV-1 CRF31_BC-Related Strains in Southern Brazil

M. Soares, C. G. Schrago, E. Sprinz, 2007, Journal of acquired immune deficiency syndromes.

The evolution of South American endemic canids: a history of rapid diversification and morphological parallelism

C. Russo, C. G. Schrago, F. Perini, 2010, Journal of evolutionary biology.

Phylogeny and chronology of the major lineages of New World hystricognath rodents: insights on the biogeography of the Eocene/Oligocene arrival of mammals in South America

C. G. Schrago, C. M. Voloch, Letícia Loss-Oliveira, 2013, BMC Research Notes.

Molecular systematics reveals the origins of subsociality in tortoise beetles (Coleoptera, Chrysomelidae, Cassidinae)

C. G. Schrago, D. Windsor, M. Simões, 2020 .

Phylogenetic nomenclature and evolution of mannose-binding lectin (MBL2) haplotypes

M. Petzl-Erler, K. Dietz, F. Lang, 2010, BMC Genetics.

Multispecies coalescent analysis unravels the non-monophyly and controversial relationships of Hexapoda

C. G. Schrago, B. Mello, Lucas Freitas, 2017, bioRxiv.

Diversification of the Genus Anopheles and a Neotropical Clade from the Late Cretaceous

C. Russo, C. G. Schrago, C. M. Voloch, 2015, PloS one.

Fast speciations and slow genes: uncovering the root of living canids

C. G. Schrago, Alessandra P. Lamarca, 2020 .

Signatures of natural selection in tree topology shape of serially sampled viral phylogenies.

C. G. Schrago, Lucia P Barzilai, 2023, Molecular phylogenetics and evolution.

Morphology and Phylogenetic Position of an Unusual Stentor polymorphus (Ciliophora: Heterotrichea) Without Symbiotic Algae

C. G. Schrago, N. Fernandes, I. D. da Silva Neto, 2014, The Journal of eukaryotic microbiology.

Conservation phylogenetics and computational species delimitation of Neotropical primates

C. G. Schrago, B. Mello, J. F. Vilela, 2018 .

A molecular study on the evolution of a subtype B variant frequently found in Brazil.

C. Russo, C. Russo, C. G. Schrago, 2008, Genetics and molecular research : GMR.

Detection of different South American hantaviruses.

C. G. Schrago, A. Guterres, J. Fernandes, 2015, Virus research.

Co-circulation of Araraquara and Juquitiba Hantavirus in Brazilian Cerrado

C. Bonvicino, C. G. Schrago, A. Guterres, 2018, Microbial Ecology.

Detection of the first incidence of Akodon paranaensis naturally infected with the Jabora virus strain (Hantavirus) in Brazil.

C. Bonvicino, C. G. Schrago, A. Guterres, 2012, Memórias do Instituto Oswaldo Cruz.

The performance of outgroup-free rooting under evolutionary radiations.

C. G. Schrago, B. Mello, Alessandra P. Lamarca, 2022, Molecular phylogenetics and evolution.

Phylogenetic analysis of the S segment from Juquitiba hantavirus: identification of two distinct lineages in Oligoryzomys nigripes.

C. Bonvicino, C. G. Schrago, M. R. Elkhoury, 2013, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

An empirical examination of the standard errors of maximum likelihood phylogenetic parameters under the molecular clock via bootstrapping.

C. G. Schrago, 2006, Genetics and molecular research : GMR.