D. Niu

发表

Evaluation of Models of the Mechanisms Underlying Intron Loss and Gain in Aspergillus Fungi

Lei-Ying Zhang, Yu-Fei Yang, D. Niu, 2010, Journal of Molecular Evolution.

Low Contents of Carbon and Nitrogen in Highly Abundant Proteins: Evidence of Selection for the Economy of Atomic Composition

Ning Li, D. Niu, Jie Lv, 2009, Journal of Molecular Evolution.

Intron gain by tandem genomic duplication: a novel case in a potato gene encoding RNA-dependent RNA polymerase

D. Niu, Ming-Yue Ma, Xin-Ran Lan, 2016, PeerJ.

Intron gain by tandem genomic duplication: a novel case and a new version of the model

D. Niu, Ming-Yue Ma, Xin-Ran Lan, 2016 .

Evaluation of the mechanisms of intron loss and gain in the social amoebae Dictyostelium

D. Niu, A. Porceddu, Ming-Yue Ma, 2015, BMC Evolutionary Biology.

Mechanisms of Intron Loss and Gain in the Fission Yeast Schizosaccharomyces

D. Niu, Tao Zhu, 2013, PloS one.

Association of Intron Loss with High Mutation Rate in Arabidopsis: Implications for Genome Size Evolution

Yu-Fei Yang, D. Niu, Tao Zhu, 2013, Genome biology and evolution.

Intron losses and gains in the nematodes

Kun-xian Shu, D. Niu, Ming-Yue Ma, 2022, Biology direct.

Desiccation does not drastically increase the accessibility of exogenous DNA to nuclear genomes: evidence from the frequency of endosymbiotic DNA transfer

D. Niu, Jun-Peng Zhao, Xi-Xi Li, 2020, BMC Genomics.

Frequency of intron loss correlates with processed pseudogene abundance: a novel strategy to test the reverse transcriptase model of intron loss

D. Niu, Tao Zhu, 2013, BMC Biology.

Aerobic prokaryotes do not have higher GC contents than anaerobic prokaryotes, but obligate aerobic prokaryotes have

D. Niu, Xin-Ran Lan, Bo-Wen Zhang, 2019, BMC Evolutionary Biology.

Aerobiosis is not associated with GC content and G to T mutations are not the signature of oxidative stress in prokaryotic evolution

D. Niu, Xin-Ran Lan, Bo-Wen Zhang, 2018 .

Aerobiosis Decreases the Genomic GC content in Prokaryotes by Guanine Oxidation

D. Niu, Xin-Ran Lan, S. Aslam, 2017, bioRxiv.

A Positive Correlation between CRISPR-Cas Contents and Cell 1 Cycle Durations Across the Bacteria Domain

D. Niu, Zhi-Ling Liu, E. Hu, 2022 .

Plant Cellular Osmotica

D. Niu, Ming Wang, Ya F. Wang, 1997 .

Protecting exons from deleterious R-loops: a potential advantage of having introns

D. Niu, 2007, Biology Direct.

Why eukaryotic cells use introns to enhance gene expression: Splicing reduces transcription-associated mutagenesis by inhibiting topoisomerase I cutting activity

Deng-Ke Niu, Yu-Fei Yang, D. Niu, 2011, Biology Direct.

Desiccation Does Not Drastically Increase the Accessibility of Foreign DNA to the Nuclear Genomes: Evidence from the Frequency of Endosymbiotic DNA Transfer

D. Niu, Jun-Peng Zhao, Cheng Fang, 2018, bioRxiv.

Strand compositional asymmetries in vertebrate large genes

D. Niu, Hai-Fang Wang, Wen-Ru Hou, 2008, Molecular Biology Reports.

Replication-associated strand asymmetries in vertebrate genomes and implications for replicon size, DNA replication origin, and termination.

D. Niu, Hai-Fang Wang, Wen-Ru Hou, 2006, Biochemical and biophysical research communications.

Strand Compositional Asymmetries of Nuclear DNA in Eukaryotes

Kui Lin, Da‐Yong Zhang, D. Niu, 2003, Journal of Molecular Evolution.

Evaluation of the mechanisms of intron loss and gain in the social amoebae Dictyostelium

D. Niu, A. Porceddu, Ming-Yue Ma, 2015, BMC Evolutionary Biology.

Higher frequency of intron loss from the promoter proximally paused genes of Drosophila melanogaster

D. Niu, Li Jiang, Xue-Nan Li, 2014, Fly.

Low-level illegitimate transcription of genes may be to silence the genes.

D. Niu, 2005, Biochemical and biophysical research communications.

Can ENCODE tell us how much junk DNA we carry in our genome?

D. Niu, Li Jiang, Deng-Ke Niu, 2013, Biochemical and biophysical research communications.

Relationship between mRNA stability and intron presence

Liang Feng, Deng-Ke Niu, D. Niu, 2007, Biochemical and Biophysical Research Communications.

Frequency of intron loss correlates with processed pseudogene abundance: a novel strategy to test the reverse transcriptase model of intron loss

D. Niu, Tao Zhu, 2013, BMC Biology.

Characterization of Human Dosage-Sensitive Transcription Factor Genes

D. Niu, S. Aslam, Xiao-Yu Zhou, 2019, bioRxiv.

A positive correlation between GC content and growth temperature in prokaryotes

D. Niu, Xin-Ran Lan, Jie Gao, 2022, bioRxiv.

A Positive Correlation between Bacterial GC Content and Growth Temperature

D. Niu, Xin-Ran Lan, Jie Gao, 2021 .

Significant Correlation between Growth Temperature and Guanine-Cytosine Content in 1 Bacteria 2 3

D. Niu, Xin-Ran Lan, Jie Gao, 2021 .

Selection for the miniaturization of highly expressed genes.

D. Niu, Liang Feng, Shu-Wei Li, 2007, Biochemical and biophysical research communications.

Aerobic prokaryotes do not have higher GC contents than anaerobic prokaryotes, but obligate aerobic prokaryotes have

D. Niu, Xin-Ran Lan, Bo-Wen Zhang, 2019, BMC Evolutionary Biology.

Evidence against the energetic cost hypothesis for the short introns in highly expressed genes

Yi-Fei Huang, D. Niu, Deng-Ke Niu, 2008, BMC Evolutionary Biology.

mRNA-mediated intron losses: evidence from extraordinarily large exons.

D. Niu, Wen-Ru Hou, Shu-Wei Li, 2005, Molecular biology and evolution.

Characterization of Human Dosage-Sensitive Transcription Factor Genes

D. Niu, S. Aslam, Xiao-Yu Zhou, 2019, bioRxiv.

Relationship Between mRNA Stability and Length: An Old Question with a New Twist

D. Niu, Liang Feng, 2007, Biochemical Genetics.

Investigating the Relationship between CRISPR-Cas Content and Growth Rate in Bacteria

D. Niu, Zhi-Ling Liu, E. Hu, 2023, bioRxiv.

Precipitous Increase of Bacterial CRISPR-Cas Abundance at Around 45°C

D. Niu, Xin-Ran Lan, Zhi-Ling Liu, 2022, Frontiers in Microbiology.

Bacterial CRISPR-Cas Abundance Increases Precipitously at Around 45°C: Linking Antivirus Immunity to Grazing Risk

D. Niu, Xin-Ran Lan, Zhi-Ling Liu, 2021, bioRxiv.

Genotypic variations between wild-type and small colony variant of Staphylococcus aureus in prosthetic valve infectious endocarditis: a comparative genomic and transcriptomic analysis.

D. Niu, Qi Wang, Hui Wang, 2017, International journal of antimicrobial agents.

Exon definition as a potential negative force against intron losses in evolution

D. Niu, 2008, Biology Direct.

Intron Losses and Gains in Nematodes: Not Eccentric at All

K. Shu, D. Niu, Ming-Yue Ma, 2021, bioRxiv.

Nucleosome deposition and DNA methylation may participate in the recognition of premature termination codon in nonsense‐mediated mRNA decay

D. Niu, Jiani Cao, Deng-Ke Niu, 2010, FEBS letters.

Ideas in Theoretical Biology Origin of Cancerous Cells from Tumours

D. Niu, Jia-kuan Chen, 1998, Acta biotheoretica.

Margulis' Theory on Division of Labour in Cells Revisited

D. Niu, Jia-Kuan Chen, Y. Liu, 2001, Acta biotheoretica.

Counting citations in texts rather than reference lists to improve the accuracy of assessing scientific contribution

Ming Li, Wen-Ru Hou, Deng-Ke Niu, 2011, BioEssays : news and reviews in molecular, cellular and developmental biology.

Dependent variable selection in phylogenetic generalized least squares regression analysis under Pagel’s lambda model

D. Niu, Zheng-Lin Chen, Hong-Ji Guo, 2023, bioRxiv.

Association between the availability of environmental resources and the atomic composition of organismal proteomes: evidence from Prochlorococcus strains living at different depths.

Ning Li, D. Niu, Jie Lv, 2008, Biochemical and biophysical research communications.

Relationship between prokaryotic GC content and environmental salinity

D. Niu, E. Hu, Shen Sun, 2023, bioRxiv.

Exon definition as a potential negative force against intron losses in evolution

D. Niu, 2008, Biology Direct.

Protecting exons from deleterious R-loops: a potential advantage of having introns

D. Niu, 2007, Biology Direct.

Imprecise intron losses are less frequent than precise intron losses but are not rare in plants

Yu-Fei Yang, D. Niu, Ming-Yue Ma, 2015, Biology Direct.