S. Bhaumik

发表

Histone Crosstalk between H2B Monoubiquitination and H3 Methylation Mediated by COMPASS

Laurence Florens, Michael P. Washburn, Jessica Schneider, 2007, Cell.

Covalent modifications of histones during development and disease pathogenesis

A. Shilatifard, Edwin R. Smith, S. Bhaumik, 2007, Nature Structural &Molecular Biology.

Elongating RNA Polymerase II Is Disassembled through Specific Degradation of Its Largest but Not Other Subunits in Response to DNA Damage in Vivo*

S. Bhaumik, S. Bagla, Shivani Malik, 2008, Journal of Biological Chemistry.

RNA Polymerase II and Associated Transcription Factors

S. Batra, M. P. Ponnusamy, S. Bhaumik, 2018, eLS.

Two Distinct Regulatory Mechanisms of Transcriptional Initiation in Response to Nutrient Signaling

S. Bhaumik, J. Ferdoush, Rwik Sen, 2017, Genetics.

Interaction of Gal4p with components of transcription machinery in vivo.

Michael R. Green, S. Bhaumik, Michael R. Green, 2003, Methods in enzymology.

Molecular parameters of hyperthermia for radiosensitization.

T. Pandita, S. Bhaumik, S. Pandita, 2009, Critical reviews in eukaryotic gene expression.

Elongating RNA Polymerase II Is Disassembled through Specific Degradation of Its Largest but Not Other Subunits in Response to DNA Damage in Vivo*

S. Bhaumik, S. Bagla, Shivani Malik, 2008, Journal of Biological Chemistry.

Stimulation of mRNA export by an F-box protein, Mdm30p, in vivo.

J. Schneider, Geetha Durairaj, A. Shukla, 2009, Journal of molecular biology.

Rrd1p, an RNA polymerase II-specific prolyl isomerase and activator of phosphoprotein phosphatase, promotes transcription independently of rapamycin response

S. Bhaumik, Shivani Malik, Rwik Sen, 2014, Nucleic acids research.

A Novel Role for Cet1p mRNA 5′-Triphosphatase in Promoter Proximal Accumulation of RNA Polymerase II in Saccharomyces cerevisiase

Geetha Durairaj, S. Bhaumik, Bhawana Uprety, 2013, Genetics.

Rad26p, a transcription-coupled repair factor, promotes the eviction and prevents the reassociation of histone H2A-H2B dimer during transcriptional elongation in vivo.

S. Bhaumik, Shivani Malik, 2012, Biochemistry.

PD2/PAF1 at the Crossroads of the Cancer Network.

S. Batra, M. P. Ponnusamy, S. Bhaumik, 2018, Cancer research.

Ubiquitin-Proteasome System Regulation of an Evolutionarily Conserved RNA Polymerase II-Associated Factor 1 Involved in Pancreatic Oncogenesis.

S. Batra, S. Bhaumik, J. Ferdoush, 2017, Biochemistry.

PCILO investigations on the conformation of two-base hairpin loop in DNA

S. Bhaumik, G. Govil, A. Saran, 1996 .

The interactions of the largest subunit of RNA polymerase II with other cellular proteins: a bioinformatic approach.

H. El-Shemy, A. Shukla, S. Bhaumik, 2009, Current issues in molecular biology.

The 26S proteasome complex: an attractive target for cancer therapy.

S. Bhaumik, Sarah Frankland-Searby, 2012, Biochimica et biophysica acta.

A novel palindromic triple-stranded structure formed by homopyrimidine dodecamer d-CTTCTCCTCTTC and homopurine hexamer d-GAAGAG.

S. Bhaumik, K. Chary, G. Govil, 1998, Nucleic acids research.

Molecular mechanics calculations on a triple stranded DNA involving C+.G-T and T.A+-C mismatched base triples.

S. Bhaumik, K. Chary, G. Govil, 1998, Journal of biomolecular structure & dynamics.

NMR structure of a parallel-stranded DNA duplex at atomic resolution.

F. B. Howard, Keliang Liu, S. Bhaumik, 2002, Nucleic acids research.

Histone methylation and ubiquitination with their cross-talk and roles in gene expression and stability

A. Shukla, S. Bhaumik, A. Shukla, 2008, Cellular and Molecular Life Sciences.

An F-Box Protein, Mdm30, Interacts with TREX Subunit Sub2 To Regulate Cellular Abundance Cotranscriptionally in Orchestrating mRNA Export Independently of Splicing and Mitochondrial Function

Geetha Durairaj, S. Bhaumik, J. Ferdoush, 2020, Molecular and Cellular Biology.

SAGA is an essential in vivo target of the yeast acidic activator Gal4p.

M. Green, S. Bhaumik, M. Green, 2001, Genes & development.

Eukaryotic Gene Expression by RNA Polymerase II

Geetha Durairaj, S. Bhaumik, Shivani Malik, 2017 .

Distinct Functions of the Cap-Binding Complex in Stimulation of Nuclear mRNA Export

S. Bhaumik, J. Ferdoush, Rwik Sen, 2019, Molecular and Cellular Biology.

TOR Facilitates the Targeting of the 19S Proteasome Subcomplex To Enhance Transcription Complex Assembly at the Promoters of the Ribosomal Protein Genes

S. Bhaumik, Amala Kaja, Bhawana Uprety, 2018, Molecular and Cellular Biology.

Eaf1p Is Required for Recruitment of NuA4 in Targeting TFIID to the Promoters of the Ribosomal Protein Genes for Transcriptional Initiation In Vivo

S. Bhaumik, Rwik Sen, Bhawana Uprety, 2015, Molecular and Cellular Biology.

The 19S proteasome subcomplex promotes the targeting of NuA4 HAT to the promoters of ribosomal protein genes to facilitate the recruitment of TFIID for transcriptional initiation in vivo

S. Bhaumik, Shivani Malik, Bhawana Uprety, 2011, Nucleic acids research.

Distinct regulatory mechanisms of eukaryotic transcriptional activation by SAGA and TFIID.

S. Bhaumik, 2011, Biochimica et biophysica acta.

The mRNA cap-binding complex stimulates the formation of pre-initiation complex at the promoter via its interaction with Mot1p in vivo

Geetha Durairaj, A. Shukla, S. Bhaumik, 2010, Nucleic acids research.

Functional Analysis of H2B-Lys-123 Ubiquitination in Regulation of H3-Lys-4 Methylation and Recruitment of RNA Polymerase II at the Coding Sequences of Several Active Genes in Vivo*

A. Shukla, S. Bhaumik, Zhenhong Duan, 2006, Journal of Biological Chemistry.

Proteasomal Regulation of Mammalian SPT16 in Controlling Transcription

J. Davie, S. Batra, Uttiya Basu, 2021, Molecular and Cellular Biology.

Rtt109 Is Required for Proper H3K56 Acetylation

Jessica Schneider, Ali Shilatifard, A. Shilatifard, 2006, Journal of Biological Chemistry.

Viral regulation of mRNA export with potentials for targeted therapy.

S. Bhaumik, Shalini Guha, 2020, Biochimica et biophysica acta. Gene regulatory mechanisms.

Transcription-coupled DNA double-strand break repair.

S. Bhaumik, Shalini Guha, 2021, DNA repair.

Mechanisms of Antisense Transcription Initiation with Implications in Gene Expression, Genomic Integrity and Disease Pathogenesis

S. Bhaumik, D. Reddy, Priyanka Barman, 2019, Non-coding RNA.

Fine-Tuning of FACT by the Ubiquitin Proteasome System in Regulation of Transcriptional Elongation

S. Bhaumik, J. Ferdoush, Rwik Sen, 2016, Molecular and Cellular Biology.

Regulation of Chromatin Assembly/Disassembly by Rtt109p, a Histone H3 Lys56-specific Acetyltransferase, in Vivo*

Geetha Durairaj, A. Shukla, S. Bhaumik, 2010, The Journal of Biological Chemistry.

Ctk Complex-Mediated Regulation of Histone Methylation by COMPASS

John J. Wyrick, Laurence Florens, Michael P. Washburn, 2006, Molecular and Cellular Biology.

An mRNA Capping Enzyme Targets FACT to the Active Gene To Enhance the Engagement of RNA Polymerase II into Transcriptional Elongation

S. Bhaumik, J. Ferdoush, Rwik Sen, 2017, Molecular and Cellular Biology.

Mechanisms of Antisense Transcription Initiation from the 3′ End of the GAL10 Coding Sequence In Vivo

Geetha Durairaj, S. Bhaumik, Shivani Malik, 2013, Molecular and Cellular Biology.

Diverse Regulatory Mechanisms of Eukaryotic Transcriptional Activation by the Proteasome Complex

S. Bhaumik, Shivani Malik, 2008, Critical reviews in biochemistry and molecular biology.

Sgf29p facilitates the recruitment of TATA box binding protein but does not alter SAGA's global structural integrity in vivo.

Geetha Durairaj, A. Shukla, S. Bhaumik, 2012, Biochemistry.

The 19 S Proteasome Subcomplex Establishes a Specific Protein Interaction Network at the Promoter for Stimulated Transcriptional Initiation in Vivo*

A. Shukla, S. Bhaumik, P. Sen, 2009, The Journal of Biological Chemistry.

Sem1p and Ubp6p orchestrate telomeric silencing by modulating histone H2B ubiquitination and H3 acetylation

G. Wani, A. Wani, Qien Wang, 2009, Nucleic acids research.

Sem 1 p and Ubp 6 p orchestrate telomeric silencing by modulating histone H 2 B ubiquitination and H 3 acetylation

G. Wani, A. Wani, Qien Wang, 2009 .

H2B-K123 ubiquitination stimulates RNAPII elongation independent of H3-K4 methylation.

A. Shukla, S. Bhaumik, 2007, Biochemical and biophysical research communications.

SAGA-associated Sgf73p facilitates formation of the preinitiation complex assembly at the promoters either in a HAT-dependent or independent manner in vivo

A. Shukla, S. Bhaumik, P. Bajwa, 2006, Nucleic acids research.

Ubp8p, a Histone Deubiquitinase Whose Association with SAGA Is Mediated by Sgf11p, Differentially Regulates Lysine 4 Methylation of Histone H3 In Vivo

A. Shukla, S. Bhaumik, P. Sen, 2006, Molecular and Cellular Biology.

Systematic analysis of essential yeast TAFs in genome‐wide transcription and preinitiation complex assembly

I. Simon, R. Young, E. Jennings, 2003, The EMBO journal.

Regulation of Antisense Transcription by NuA4 Histone Acetyltransferase and Other Chromatin Regulatory Factors

S. Bhaumik, J. Ferdoush, Rwik Sen, 2016, Molecular and Cellular Biology.

Rad26p, a transcription-coupled repair factor, is recruited to the site of DNA lesion in an elongating RNA polymerase II-dependent manner in vivo

Geetha Durairaj, A. Shukla, S. Bhaumik, 2009, Nucleic acids research.

Regulation of active genome integrity and expression by Rad26p

S. Bhaumik, Shivani Malik, 2014, Nucleus.

Preferential Repair of DNA Double-strand Break at the Active Gene in Vivo*

T. Pandita, S. Bhaumik, P. Chaurasia, 2012, The Journal of Biological Chemistry.

In vivo target of a transcriptional activator revealed by fluorescence resonance energy transfer.

Michael R Green, Michael R. Green, S. Bhaumik, 2004, Genes & development.

Fluorescence resonance energy transfer in revealing protein-protein interactions in living cells.

S. Bhaumik, 2021, Emerging topics in life sciences.

Genome-Wide Regulations of the Preinitiation Complex Formation and Elongating RNA Polymerase II by an E3 Ubiquitin Ligase, San1

S. Bhaumik, C. Govind, J. Ferdoush, 2021, Molecular and cellular biology.

Mixed lineage leukemia: histone H3 lysine 4 methyltransferases from yeast to human

S. Bhaumik, Shivani Malik, 2010, The FEBS journal.

Differential Requirement of SAGA Components for Recruitment of TATA-Box-Binding Protein to Promoters In Vivo

Michael R. Green, S. Bhaumik, Michael R. Green, 2002, Molecular and Cellular Biology.

Review of the Rpt3 Genes Encoding Part of the 26S Proteasome Associated with Loci Underlying Disease Resistance in Soybean

D. Lightfoot, S. Bhaumik, Shivani Malik, 2012 .

Sus1p facilitates pre-initiation complex formation at the SAGA-regulated genes independently of histone H2B de-ubiquitylation.

Geetha Durairaj, A. Shukla, S. Bhaumik, 2014, Journal of molecular biology.

Transcriptional stimulatory and repressive functions of histone H2B ubiquitin ligase

S. Bhaumik, Rwik Sen, 2013, Transcription.

Functional Analysis of Bre1p, an E3 Ligase for Histone H2B Ubiquitylation, in Regulation of RNA Polymerase II Association with Active Genes and Transcription in Vivo*

Geetha Durairaj, S. Bhaumik, Rwik Sen, 2013, The Journal of Biological Chemistry.

A new regulatory pathway of mRNA export by an F-box protein, Mdm30

Geetha Durairaj, S. Bhaumik, Shweta Lahudkar, 2012, RNA.

Distinct classes of yeast promoters revealed by differential TAF recruitment.

X. Y. Li, M. Green, S. Bhaumik, 2000, Science.

Nuclear export of mRNA and its regulation by ubiquitylation

Geetha Durairaj, S. Bhaumik, P. Garg, 2009, RNA biology.

Analysis of in vivo targets of transcriptional activators by fluorescence resonance energy transfer.

S. Bhaumik, 2006, Methods.

Homopurine and homopyrimidine strands complementary in parallel orientation form an antiparallel duplex at neutral pH with A-C, G-T, and T-C mismatched base pairs.

S. Bhaumik, K. Chary, G. Govil, 1997, Biopolymers.

Rad26p regulates the occupancy of histone H2A–H2B dimer at the active genes in vivo

S. Bhaumik, Shivani Malik, P. Chaurasia, 2011, Nucleic acids research.

Rad 26 p regulates the occupancy of histone H 2 A – H 2 B dimer at the active genes in vivo

S. Bhaumik, Shivani Malik, P. Chaurasia, 2012 .

Functional Analysis of Rad14p, a DNA Damage Recognition Factor in Nucleotide Excision Repair, in Regulation of Transcription in Vivo*

S. Bhaumik, P. Chaurasia, Rwik Sen, 2012, The Journal of Biological Chemistry.

Selective Recruitment of TAFs by Yeast Upstream Activating Sequences Implications for Eukaryotic Promoter Structure

Michael R. Green, Xiaoyong Li, S. Bhaumik, 2002, Current Biology.

NMR characterisation of a triple stranded complex formed by homo-purine and homo-pyrimidine DNA strands at 1:1 molar ratio and acidic pH.

S. Bhaumik, K. Chary, G. Govil, 1995, Nucleic acids research.

Molecular Dynamics and Mechanics Calculations on a DNA Duplex with A+C, G-T and T-C Mispairs

S. Bhaumik, K. Chary, 2002, Journal of biomolecular structure & dynamics.

Chromatin and non-chromatin immunoprecipitations to capture protein-protein and protein-nucleic acid interactions in living cells.

P. Chakraborty, S. Bhaumik, Amala Kaja, 2023, Methods.

Pyruvate metabolism in Halobacterium salinarium studied by intracellular 13C nuclear magnetic resonance spectroscopy

H. M. Sonawat, S. Bhaumik, S. Bhaumik, 1994, Journal of bacteriology.

UPS writes a new saga of SAGA.

P. Chakraborty, S. Bhaumik, Priyanka Barman, 2023, Biochimica et biophysica acta. Gene regulatory mechanisms.

Ubiquitin-proteasome system regulation of a key gene regulatory factor, Paf1C.

S. Bhaumik, J. Ferdoush, Amala Kaja, 2023, Gene.

A novel UPS regulation of Sgf73/ataxin-7 that maintains the integrity of the co-activator SAGA in orchestrating transcription.

P. Chakraborty, S. Bhaumik, J. Ferdoush, 2023, Genetics.

Ubiquitin-Proteasome System Regulation of an Evolutionarily Conserved RNA Polymerase II-Associated Factor 1 Involved in Pancreatic Oncogenesis.

S. Batra, S. Bhaumik, J. Ferdoush, 2017, Biochemistry.

Distinct regulatory mechanisms of eukaryotic transcriptional activation by SAGA and TFIID.

S. Bhaumik, 2011, Biochimica et biophysica acta.

Preferential Repair of DNA Double-strand Break at the Active Gene in Vivo*

T. Pandita, S. Bhaumik, Rwik Sen, 2012, The Journal of Biological Chemistry.