Zuojian Tang

发表

Genetic Inactivation of the PRC2 Complex in T-Cell Acute Lymphoblastic Leukemia

A. Ferrando, R. Rabadán, T. Huynh, 2011, Nature Medicine.

The Ecoresponsive Genome of Daphnia pulex

Todd H. Oakley, Abraham E. Tucker, Rupali Patwardhan, 2011, Science.

Transcription factor profiling reveals molecular choreography and key regulators of human retrotransposon expression

J. Boeke, D. Fenyö, Zuojian Tang, 2018, Proceedings of the National Academy of Sciences.

Human transposon insertion profiling: Analysis, visualization and identification of somatic LINE-1 insertions in ovarian cancer

J. Boeke, I. Shih, Sisi Ma, 2017, Proceedings of the National Academy of Sciences.

FIREWACh: High-throughput Functional Detection of Transcriptional Regulatory Modules in Mammalian Cells

Richard Bonneau, Yuval Kluger, Zuojian Tang, 2014, Nature Methods.

ESTPiper – a web-based analysis pipeline for expressed sequence tags

Qunfeng Dong, Zuojian Tang, Chris Hemmerich, 2009, BMC Genomics.

Relapse specific mutations in NT5C2 in childhood acute lymphoblastic leukemia

W. Evans, C. Mason, Sheng Li, 2013, Nature Genetics.

UXT is required for spermatogenesis in mice

D. Fenyö, S. Ha, S. Logan, 2018, PloS one.

Somatic retrotransposition is infrequent in glioblastomas

J. Boeke, G. Riggins, G. Gallia, 2016, Mobile DNA.

University of Birmingham ESTPiper--a web-based analysis pipeline for expressed sequence tags

Jeong-Hyeon Choi, J. Colbourne, Zuojian Tang, 2009 .

Human transposon insertion profiling by sequencing (TIPseq) to map LINE-1 insertions in single cells

J. Boeke, D. Fenyö, K. Burns, 2020, Philosophical Transactions of the Royal Society B.

Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome

Thiago L. A. Miller, J. Boeke, A. Heguy, 2019, Mobile DNA.

Assessing quality and completeness of human transcriptional regulatory pathways on a genome-wide scale

Alexander Statnikov, Iannis Aifantis, Zuojian Tang, 2011, Biology Direct.

Co-expression network analysis identifies Spleen Tyrosine Kinase (SYK) as a candidate oncogenic driver in a subset of small-cell lung cancer

Jonathan E. Clark, Shyr Yu, Daniel C. Liebler, 2013, BMC Systems Biology.

An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer*

Li Ding, David L. Tabb, Daniel C. Liebler, 2015, Molecular & Cellular Proteomics.

Identification of a Face Enhancer Reveals Direct Regulation of LIM Homeobox 8 (Lhx8) by Wingless-Int (WNT)/β-Catenin Signaling*♦

Juhee Jeong, Zuojian Tang, Stuart Brown, 2014, The Journal of Biological Chemistry.

Lhx6 and Lhx8 promote palate development through negative regulation of a cell cycle inhibitor gene, p57Kip2.

Stuart M. Brown, J. Rubenstein, Juhee Jeong, 2015, Human molecular genetics.

Effects of Nickel Treatment on H3K4 Trimethylation and Gene Expression

K. Tchou-Wong, Zuojian Tang, Stuart Brown, 2011, PloS one.

A Streamlined Method for Detecting Structural Variants in Cancer Genomes by Short Read Paired-End Sequencing

Stuart M. Brown, Efstratios Efstathiadis, Zuojian Tang, 2012, PloS one.

Phylogenetic debugging of a complete human biosynthetic pathway transplanted into yeast

J. Boeke, I. Yanai, B. Tu, 2019, Nucleic acids research.

Human to yeast pathway transplantation: cross-species dissection of the adenine de novo pathway regulatory node

J. Boeke, I. Yanai, B. Tu, 2017, bioRxiv.

Synthesis, debugging, and effects of synthetic chromosome consolidation: synVI and beyond

H. K. Dai, David Fenyö, Yizhi Cai, 2017, Science.

Low escape-rate genome safeguards with minimal molecular perturbation of Saccharomyces cerevisiae

Yizhi Cai, Joel S. Bader, Jef D. Boeke, 2017, Proceedings of the National Academy of Sciences.

Prediction of Co-Regulated Gene Groups through Gene Ontology

Sieu Phan, Fazel Famili, Youlian Pan, 2007, 2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology.

Prediction ofCo-Regulated GeneGroups through GeneOntology

Fazel Famili, Youlian Pan, Zuojian Tang, 2007 .

Molecular profiles and urinary biomarkers of upper tract urothelial carcinomas associated with aristolochic acid exposure

J. Zavadil, E. Venturini, M. Olivier, 2021, International journal of cancer.

ChIP-Seq Analytics: Methods and Systems to Improve ChIP-Seq Peak Identification

D. Frank Hsu, Christina Schweikert, Stuart M. Brown, 2012 .

Combining multiple ChIP-seq peak detection systems using combinatorial fusion

Christina Schweikert, Zuojian Tang, D. Hsu, 2012, BMC Genomics.

An exon junction complex‐independent function of Barentsz in neuromuscular synapse growth

C. Ho, Jean-Yves Roignant, J. Treisman, 2021, EMBO reports.

An exon junction complex-independent function of Barentsz in neuromuscular synapse growth

C. Ho, Jean-Yves Roignant, J. Treisman, 2021, bioRxiv.

A novel pattern based clustering methodology for time-series microarray data

Sieu Phan, Fazel Famili, Ziying Liu, 2007, Int. J. Comput. Math..

EST and microarray analysis of horn development in Onthophagus beetles

A. Moczek, J. Andrews, Zuojian Tang, 2009, BMC Genomics.

Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome

David Fenyö, Jef D. Boeke, Zuojian Tang, 2019, Mobile DNA.

Abstract 2482: A portable bioinformatics pipeline for the FDA authorized IMPACT DNAseq assay

Nikhil Kumar, Cyriac Kandoth, Feng Liu, 2019, Bioinformatics, Convergence Science, and Systems Biology.

TranspoScope: interactive visualization of retrotransposon insertions

Zuojian Tang, Mark Grivainis, David Fenyö, 2020, Bioinform..