David Langenberger

发表

Dicer-processed small RNAs: rules and exceptions.

Steve Hoffmann, David Langenberger, Peter F Stadler, 2013, Journal of experimental zoology. Part B, Molecular and developmental evolution.

High-throughput sequencing and small non-coding RNAs

David Langenberger, 2013 .

Manipulating base quality scores enables variant calling from bisulfite sequencing alignments using conventional bayesian approaches

P. Stadler, M. Fasold, David Langenberger, 2021, bioRxiv.

Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis

Albert J. Vilella, Steven G. Schroeder, Edward J. Smith, 2010, PLoS biology.

Mapping the RNA-Seq trash bin

P. Stadler, Sven Findeiß, M. Alexis, 2013, RNA biology.

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

Andrea Tanzer, P. Stadler, J. Hackermüller, 2014, Genome Biology.

Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing

R. Spang, P. Stadler, A. Rosenwald, 2012, Nature Genetics.

Alu Elements in ANRIL Non-Coding RNA at Chromosome 9p21 Modulate Atherogenic Cell Functions through Trans-Regulation of Gene Networks

Peter F. Stadler, Steve Hoffmann, Markus Scholz, 2013, PLoS genetics.

Chromosome‐level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates

P. Stadler, D. Galbraith, Claude Becker, 2022, Plant biotechnology journal.

MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data

Claude Becker, D. Weigel, David Langenberger, 2022, Quantitative Plant Biology.

In silico target network analysis of de novo-discovered, tick saliva-specific microRNAs reveals important combinatorial effects in their interference with vertebrate host physiology

M. Hackenberg, David Langenberger, Michail Kotsyfakis, 2017, RNA.

Traces of post-transcriptional RNA modifications in deep sequencing data

Steve Hoffmann, David Langenberger, Peter F Stadler, 2011, Biological chemistry.

Evidence for human microRNA-offset RNAs in small RNA sequencing data

Peter F. Stadler, Steve Hoffmann, David Langenberger, 2009, Bioinform..

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

Ana M. Aransay, Martin Sturm, Michael Hackenberg, 2009, Nucleic Acids Res..

DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments

Peter F. Stadler, Steve Hoffmann, David Langenberger, 2011, Nucleic Acids Res..

Optimal choice of functional and off-target effect-reduced siRNAs for RNAi therapeutics

P. Kolatkar, David Langenberger, I. Aksoy, 2013 .

microRNA Target Predictions across Seven Drosophila Species and Comparison to Mammalian Targets

Kristin C. Gunsalus, David Langenberger, Dominic Grün, 2005, PLoS Comput. Biol..

TargetSpy: a supervised machine learning approach for microRNA target prediction

Dmitrij Frishman, Martin Sturm, Michael Hackenberg, 2010, BMC Bioinformatics.

The EpiDiverse Plant Epigenome-Wide Association Studies (EWAS) Pipeline

N. Fernández-Pozo, S. Rensing, David Langenberger, 2021, Epigenomes.

Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis

Peter F. Stadler, David Langenberger, Adam Nunn, 2020, bioRxiv.

Computational prediction of microRNA genes.

David Langenberger, Peter F Stadler, Jana Hertel, 2014, Methods in molecular biology.

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns

Claus Thorn Ekstrøm, Peter F. Stadler, Jan Gorodkin, 2011, Bioinform..

MYC/MIZ1-dependent gene repression inversely coordinates the circadian clock with cell cycle and proliferation

P. Stadler, A. Rosenwald, R. Eils, 2016, Nature Communications.

conditional expression of Myd 88 ( p . L 252 P ) leads to the development of diffuse large B cell lymphoma in mice

A. Rosenwald, R. Eils, W. Klapper, 2017 .

Identification and Classification of Small RNAs in Transcriptome Sequence Data

Peter F. Stadler, Steve Hoffmann, David Langenberger, 2010, Pacific Symposium on Biocomputing.

MicroRNA or Not MicroRNA?

Peter F. Stadler, Hakim Tafer, Steve Hoffmann, 2011, BSB.

EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics

P. Stadler, M. Fasold, N. Fernández-Pozo, 2021, NAR genomics and bioinformatics.

Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates

P. Stadler, D. Weigel, C. Lanz, 2021 .

plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants

Ivo Grosse, Peter F. Stadler, David Langenberger, 2014, Front. Plant Sci..

MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant WGBS data

D. Weigel, J. Hagmann, David Langenberger, 2022, bioRxiv.

Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma

Jules N. A. Kerssemakers, P. Stadler, A. Rosenwald, 2019, Nature Communications.

Mapping the RNA-Seq trash bin

P. Stadler, Sven Findeiß, M. Alexis, 2013, RNA Biology.

Manipulating base quality scores enables variant calling from bisulfite sequencing alignments using conventional bayesian approaches

P. Stadler, M. Fasold, David Langenberger, 2021, BMC Genomics.

The landscape of genomic alterations across childhood cancers

Michael C. Heinold, Jules N. A. Kerssemakers, David C. Jones, 2018, Nature.

Mapping the RNA-Seq trash bin

P. Stadler, M. Alexis, S. Hoffmann, 2013, RNA Biology.