Sayaka Miura

发表

Origins and Evolution of MicroRNA Genes in Drosophila Species

Masatoshi Nei, Sayaka Miura, M. Nei, 2010, Genome biology and evolution.

Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data

Sudhir Kumar, Jiyeong Choi, Sayaka Miura, 2019, bioRxiv.

Predicting clone genotypes from tumor bulk sequencing of multiple samples

Louise A. Huuki, Sudhir Kumar, Sayaka Miura, 2018, bioRxiv.

Origins and Evolution of MicroRNA Genes in Plant Species

M. Nei, M. Nozawa, Sayaka Miura, 2012, Genome biology and evolution.

Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data

Sudhir Kumar, Jiyeong Choi, Sayaka Miura, 2020, Scientific Reports.

Abstracts from the 3rd International Genomic Medicine Conference (3rd IGMC 2015)

Peter Natesan Pushparaj, Jennifer D. Churchill, Omran M. Rashidi, 2016, BMC Genomics.

Using Disease-Associated Coding Sequence Variation to Investigate Functional Compensation by Human Paralogous Proteins

Sudhir Kumar, Sayaka Miura, S. Tate, 2015, Evolutionary bioinformatics online.

A phylogenetic approach to study the evolution of somatic mutational processes in cancer

Sudhir Kumar, J. Townsend, Sajjad Karim, 2022, Communications Biology.

The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study

Zheng Wang, Sudhir Kumar, A. Galvani, 2021, The Lancet Microbe.

Clone Phylogenetics Reveals Metastatic Tumor Migrations, Maps, and Models

Maxwell D. Sanderford, Sudhir Kumar, J. Townsend, 2022, Cancers.

Molecular evidence for SARS-CoV-2 in samples collected from patients with morbilliform eruptions since late 2019 in Lombardy, northern Italy

M. Canuti, E. Tanzi, A. Amendola, 2021, Environmental Research.

Abstracts from the 3rd International Genomic Medicine Conference (3rd IGMC 2015)

Peter Natesan Pushparaj, Jennifer D. Churchill, Omran M. Rashidi, 2016, BMC Genomics.

Evolutionary Changes of the Target Sites of Two MicroRNAs Encoded in the Hox Gene Cluster of Drosophila and Other Insect Species

M. Nei, M. Nozawa, Sayaka Miura, 2010, Genome biology and evolution.

Random fluctuation of selection coefficients and the extent of nucleotide variation in human populations

M. Nei, Sayaka Miura, Zhenguo Zhang, 2013, Proceedings of the National Academy of Sciences.

An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic

Maxwell D. Sanderford, Sudhir Kumar, Sergei L Kosakovsky Pond, 2020, bioRxiv.

An Evolutionary Portrait of the Progenitor SARS-CoV-2 and Its Dominant Offshoots in COVID-19 Pandemic

Maxwell D. Sanderford, Sudhir Kumar, Sergei L Kosakovsky Pond, 2021, Molecular biology and evolution.

A new method for inferring timetrees from temporally sampled molecular sequences

Sudhir Kumar, Sayaka Miura, Louise A. Huuki, 2019, bioRxiv.

Evolution of somatic mutational processes in cancer 6 7

J. Townsend, Sajjad Karim, Jiyeong Choi, 2022 .

Phylomedicine of mutational processes in somatic cancer cell populations

Sudhir Kumar, Jiyeong Choi, Sayaka Miura, 2021, bioRxiv.

MOCA for Integrated Analysis of Gene Expression and Genetic Variation in Single Cells

Sudhir Kumar, Hannah Kim, Sayaka Miura, 2022, Frontiers in Genetics.

Predicting clone genotypes from tumor bulk sequencing of multiple samples

Sudhir Kumar, Sayaka Miura, Karen Gomez, 2018, bioRxiv.

Computational enhancement of single-cell sequences for inferring tumor evolution

Sudhir Kumar, Sayaka Miura, Karen Gomez, 2018, bioRxiv.

Somatic evolutionary timings of driver mutations

Louise A. Huuki, Sudhir Kumar, J. Townsend, 2018, BMC Cancer.

Migrations of cancer cells through the lens of phylogenetic biogeography

Sudhir Kumar, Sayaka Miura, Olumide Oladeinde, 2021, Scientific Reports.

TopHap: Rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity

Maxwell D. Sanderford, Sudhir Kumar, Sergei L Kosakovsky Pond, 2021, bioRxiv.

Somatic evolutionary timings of driver mutations

Louise A. Huuki, Sudhir Kumar, J. Townsend, 2018, BMC Cancer.

Delineation of Tumor Migration Paths by Using a Bayesian Biogeographic Approach

Sudhir Kumar, Sayaka Miura, Tracy Vu, 2019, Cancers.

PathFinder: Bayesian inference of clone migration histories in cancer.

Maxwell D. Sanderford, Sudhir Kumar, K. Tamura, 2020, Bioinformatics.

PathFinder: Bayesian inference of clone migration histories in cancer

Maxwell D. Sanderford, Sudhir Kumar, K. Tamura, 2020, bioRxiv.

Improving cellular phylogenies through the integrated use of mutation order and optimality principles

Maxwell D. Sanderford, Sudhir Kumar, Sayaka Miura, 2023, Computational and structural biotechnology journal.

Bootstrap confidence for molecular evolutionary estimates from tumor bulk sequencing data

Maxwell D. Sanderford, Sudhir Kumar, Sayaka Miura, 2023, Frontiers in Bioinformatics.

An evolutionary portrait of the progenitor SARS ‐ CoV ‐ 2 and its dominant offshoots in COVID ‐ 19 pandemic

Kumar, Sudhir, Sanderford, 2021 .