J. Becker

发表

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

Jörg D. Becker, Filipe Borges, Robert A. Martienssen, 2009, Cell.

Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA

R. Martienssen, J. Feijó, F. Berger, 2012, Cell.

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

R. Giegerich, A. Becker, Jan-Philip Schlüter, 2010, BMC Genomics.

Genomic organization and expression properties of the MtSucS1 gene, which encodes a nodule-enhanced sucrose synthase in the model legume Medicago truncatula

A. Pühler, J. Becker, H. Küster, 1999, Molecular and General Genetics MGG.

Comparative transcriptomic analysis reveals conserved transcriptional programs underpinning organogenesis and reproduction in land plants

F. Berger, M. Mutwil, S. Proost, 2020, bioRxiv.

Phylogenomic analysis of gene co‐expression networks reveals the evolution of functional modules

K. Vandepoele, S. Rensing, D. Lang, 2017, The Plant journal : for cell and molecular biology.

Early transcriptional response of Saccharomyces cerevisiae to stress imposed by the herbicide 2,4-dichlorophenoxyacetic acid.

Miguel C. Teixeira, Isabel Sá-Correia, A. R. Fernandes, 2006, FEMS yeast research.

Gene Family Analysis of the Arabidopsis Pollen Transcriptome Reveals Biological Implications for Cell Growth, Division Control, and Gene Expression Regulation1[w]

J. Feijó, J. Becker, C. Pina, 2005, Plant Physiology.

BKDB 2005 Bioinformatics : Knowledge Discovery in Biology

Mário J. Silva, F. Couto, J. Becker, 2005 .

Arabidopsis Tetraspanins Are Confined to Discrete Expression Domains and Cell Types in Reproductive Tissues and Form Homo- and Heterodimers When Expressed in Yeast1[C][W][OPEN]

J. Becker, P. Qin, S. McCormick, 2013, Plant Physiology.

Low-dose ionizing radiation induces therapeutic neovascularization in a pre-clinical model of hindlimb ischemia

M. Mareel, T. Carvalho, J. Rino, 2017, Cardiovascular research.

Setting the Stage for the Next Generation: Epigenetic Reprogramming During Sexual Plant Reproduction

J. Becker, Marcela Hernández-Coronado, Leonor C. Boavida, 2015 .

Effects of Delta1 and Jagged1 on Early Human Hematopoiesis: Correlation with Expression of Notch Signaling‐Related Genes in CD34+ Cells

J. V. van Dongen, F. Weerkamp, F. Staal, 2006, Stem cells.

Early transcriptional responseofSaccharomyces cerevisiae to stress imposed by theherbicide 2 , 4-dichlorophenoxyacetic acid

Miguel C. Teixeira, A. R. Fernandes, I. Sá-Correia, 2006 .

Assessment of fight outcome is needed to activate socially driven transcriptional changes in the zebrafish brain

Rui F. Oliveira, J. Lopes, J. Becker, 2016, Proceedings of the National Academy of Sciences.

Genetic subtraction profiling identifies genes essential for Arabidopsis reproduction and reveals interaction between the female gametophyte and the maternal sporophyte

U. Grossniklaus, J. Becker, Michael Federer, 2007, Genome Biology.

Comparative Transcriptomics of Arabidopsis Sperm Cells

J. Feijó, Rui Gardner, F. Borges, 2008 .

Characterization of NVf32: a narbonin-like nodulin of high abundance in Vicia faba L

A. Pühler, U. Kahmann, J. Becker, 2002 .

The Sinorhizobium meliloti ExpE1 protein secreted by a type I secretion system involving ExpD1 and ExpD2 is required for biosynthesis or secretion of the exopolysaccharide galactoglucan.

A. Pühler, J. Becker, A. Becker, 2000, Microbiology.

Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin

R. Martienssen, F. Berger, T. Higashiyama, 2020, Nature Cell Biology.

The 3D architecture and molecular foundations of de novo centriole assembly via bicentrioles

G. Goshima, Martin Schorb, Tiago Paixão, 2020, Current Biology.

Transthyretin Proteins Regulate Angiogenesis by Conferring Different Molecular Identities to Endothelial Cells*

J. Kelly, J. Becker, P. Marcelino, 2013, The Journal of Biological Chemistry.

Mucoid morphotype variation of Burkholderia multivorans during chronic cystic fibrosis lung infection is correlated with changes in metabolism, motility, biofilm formation and virulence.

J. Becker, L. M. Moreira, D. Mil-Homens, 2011, Microbiology.

Transcriptional profiling in Saccharomyces cerevisiae relevant for predicting alachlor mechanisms of toxicity

J. Becker, C. A. Viegas, Fátima N. Gil, 2011, Environmental toxicology and chemistry.

Genome-Wide Analysis of PAPS1-Dependent Polyadenylation Identifies Novel Roles for Functionally Specialized Poly(A) Polymerases in Arabidopsis thaliana

M. Lenhard, C. Kappel, J. Becker, 2015, PLoS genetics.

Evolutionarily conserved mechanisms of male germline development in flowering plants and animals.

J. Becker, P. Navarro-Costa, R. Martinho, 2014, Biochemical Society transactions.

FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei

R. Martienssen, R. Slotkin, Rui Gardner, 2012, Plant Methods.

Elucidating how the saprophytic fungus Aspergillus nidulans uses the plant polyester suberin as carbon source

J. Renaut, J. Becker, C. Leclercq, 2014, BMC Genomics.

Isolation of Arabidopsis Pollen, Sperm Cells, and Vegetative Nuclei by Fluorescence-Activated Cell Sorting (FACS).

J. Becker, C. Bispo, Mário R. Santos, 2017, Methods in molecular biology.

Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida

Mark Stitt, Takayuki Tohge, Zoran Nikoloski, 2019, Nature Communications.

Natural Products from Bryophytes: From Basic Biology to Biotechnological Applications

M. Thorsteinsdóttir, R. Reski, N. Cronberg, 2021, Critical Reviews in Plant Sciences.

Transcriptomic and metabolomic profiling of ionic liquid stimuli unveils enhanced secondary metabolism in Aspergillus nidulans

J. Becker, M. Galceran, O. Núñez, 2016, BMC Genomics.

Genomic expression program involving the Haa1p-regulon in Saccharomyces cerevisiae response to acetic acid.

Isabel Sá-Correia, J. Becker, I. Sá-Correia, 2010, Omics : a journal of integrative biology.

The Sinorhizobium meliloti EmrR regulator is required for efficient colonization of Medicago sativa root nodules.

J. Becker, L. M. Moreira, A. T. Marques, 2014, Molecular plant-microbe interactions : MPMI.

Gametophyte interaction and sexual reproduction: how plants make a zygote.

J. Feijó, J. Becker, Ana María Vieira, 2005, The International journal of developmental biology.

Comparative Transcriptomic Analysis of the Burkholderia cepacia Tyrosine Kinase bceF Mutant Reveals a Role in Tolerance to Stress, Biofilm Formation, and Virulence

R. Ryan, M. Givskov, J. Becker, 2013, Applied and Environmental Microbiology.

MicroRNA activity in the Arabidopsis male germline.

R. Martienssen, R. Slotkin, F. Borges, 2011, Journal of experimental botany.

Blood–brain barrier transport and neuroprotective potential of blackberry-digested polyphenols: an in vitro study

Rui Gardner, D. Stewart, G. McDougall, 2019, European Journal of Nutrition.

A Transcriptome Atlas of Physcomitrella patens Provides Insights into the Evolution and Development of Land Plants.

J. Feijó, L. Dolan, J. Becker, 2016, Molecular plant.

vessel formation in developing mouse embryos Overexpression of delta-like 4 induces arterialization and attenuates

J. Becker, S. R. Kumar, P. Gill, 2013 .

vessel formation in developing mouse embryos induces arterialization and attenuates delta-like 4 Overexpression of

J. Becker, S. R. Kumar, P. Gill, 2009 .

Overexpression of delta-like 4 induces arterialization and attenuates vessel formation in developing mouse embryos.

J. Becker, S. R. Kumar, P. Gill, 2008, Blood.

Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants

F. Berger, M. Mutwil, S. Proost, 2021, Nature Plants.

Transcriptomics of Arabidopsis sperm cells at single-cell resolution

J. Becker, C. Misra, M. Rafael-Fernandes, 2019, Plant Reproduction.

The Trithorax group protein dMLL3/4 instructs the assembly of the zygotic genome at fertilization

J. Becker, P. Navarro-Costa, J. Sobral, 2018, bioRxiv.

Expression-based and co-localization detection of arabinogalactan protein 6 and arabinogalactan protein 11 interactors in Arabidopsis pollen and pollen tubes

S. Masiero, J. Becker, M. I. Amorim, 2013, BMC Plant Biology.

Title : A transcriptome atlas of Physcomitrella patens provides insights into the evolution and development of land plants Running Title : Physcomitrella Transcriptome Atlas

J. Feijó, L. Dolan, J. Becker, 2016 .

The poly(A) polymerase PAPS1 interacts with the RNA-directed DNA-methylation pathway in sporophyte and pollen development.

M. Lenhard, R. Slotkin, L. Altschmied, 2019, The Plant journal : for cell and molecular biology.

Comparative Transcriptomics of Arabidopsis Sperm Cells1[C][W]

J. Feijó, Rui Gardner, G. Gomes, 2008, Plant Physiology.

Intercellular communication in Arabidopsis thaliana pollen discovered via AHG3 transcript movement from the vegetative cell to sperm

C. Köhler, J. Becker, Jun Yi, 2015, Proceedings of the National Academy of Sciences.

Transcriptional Profiling of Arabidopsis Tissues Reveals the Unique Characteristics of the Pollen Transcriptome1[w]

J. Feijó, M. Haury, J. Carneiro, 2003, Plant Physiology.

Heat and water stress induce unique transcriptional signatures of heat-shock proteins and transcription factors in grapevine

L. Carvalho, S. Amâncio, J. Becker, 2014, Functional & Integrative Genomics.

Transcriptomic comparison between two Vitis vinifera L. varieties (Trincadeira and Touriga Nacional) in abiotic stress conditions

L. Carvalho, S. Amâncio, J. Becker, 2016, BMC Plant Biology.

The making of gametes in higher plants.

J. Feijó, J. Becker, Leonor C. Boavida, 2005, The International journal of developmental biology.

How many genes are needed to make a pollen tube? Lessons from transcriptomics.

J. Feijó, J. Becker, 2007, Annals of botany.

Regulatory dynamics of gene expression in the developing male gametophyte of Arabidopsis

D. Honys, J. Becker, D. Twell, 2022, Plant Reproduction.

Cell- and Tissue-Specific Transcriptome Analyses of Medicago truncatula Root Nodules

T. Bisseling, E. Limpens, J. Becker, 2013, PloS one.

The nodulin VfENOD18 is an ATP-binding protein in infected cells of Vicia faba L. nodules

A. Pühler, J. Becker, L. M. Moreira, 2001, Plant Molecular Biology.

Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity

Detlef Weigel, Claude Becker, Hadi Putra, 2016, eLife.

GLUTAMATE RECEPTOR-LIKE channels are essential for chemotaxis and reproduction in mosses

J. Feijó, J. Becker, D. S. Damineli, 2017, Nature.

The broad bean nodulin VfENOD18 is a member of a novel family of plant proteins with homologies to the bacterial MJ0577 superfamily

A. Pühler, J. Becker, H. Küster, 2000, Molecular Genetics and Genomics.

Transcriptomic Profiling of the Saccharomyces cerevisiae Response to Quinine Reveals a Glucose Limitation Response Attributable to Drug-Induced Inhibition of Glucose Uptake

Sandra Tenreiro, Margarida Palma, S. Tenreiro, 2009, Antimicrobial Agents and Chemotherapy.

The conserved transcriptional program of metazoan male germ cells uncovers ancient origins of human infertility

D. Sobral, M. Mutwil, H. Schuppe, 2022, bioRxiv.

V-ATPase Proton Pumping Activity Is Required for Adult Zebrafish Appendage Regeneration

J. Rodríguez-León, A. Jacinto, J. Becker, 2014, PloS one.

Gametogenesis in the major group of vascular plants : the angiosperms

J. Feijó, J. Becker, Leonor C. Boavida, 2005 .

A dynamic balance between gene activation and repression regulates the shade avoidance response in Arabidopsis.

J. Becker, M. Carabelli, M. Possenti, 2005, Genes & development.

Identification and functional analysis of novel genes expressed in the Anterior Visceral Endoderm.

J. Becker, J. Belo, S. Marques, 2011, The International journal of developmental biology.

Correction: Cell- and Tissue-Specific Transcriptome Analyses of Medicago truncatula Root Nodules

T. Bisseling, E. Limpens, J. Becker, 2014, PLoS ONE.

Comparative analysis of transcriptomic responses to sub-lethal levels of six environmentally relevant pesticides in Saccharomyces cerevisiae

J. Becker, C. A. Viegas, Fátima N. Gil, 2018, Ecotoxicology.

Laser Microdissection Unravels Cell-Type-Specific Transcription in Arbuscular Mycorrhizal Roots, Including CAAT-Box Transcription Factor Gene Expression Correlating with Fungal Contact and Spread1[W]

J. Becker, H. Küster, N. Hohnjec, 2011, Plant Physiology.

Kingdom-wide comparison reveals conserved diurnal gene expression in Archaeplastida

M. Stitt, A. Fernie, Z. Nikoloski, 2018, bioRxiv.

A Histone-Like Nucleoid Structuring Protein Regulates Several Virulence Traits in Burkholderia multivorans

J. Becker, L. M. Moreira, I. N. Silva, 2021, Applied and environmental microbiology.

BOLITA, an Arabidopsis AP2/ERF-like transcription factor that affects cell expansion and proliferation/differentiation pathways

J. Becker, Shital Dixit, R. Greco, 2006, Plant Molecular Biology.

The RIM101 pathway has a role in Saccharomyces cerevisiae adaptive response and resistance to propionic acid and other weak acids.

Artur B. Lourenço, A. R. Fernandes, J. Becker, 2009, FEMS yeast research.

Decision-MakingPlant Cell Cycle

J. Becker, Patrícia A. Pereira, F. Sousa, 2012 .

Signalling by tips.

J. Feijó, J. Becker, A. C. Certal, 2004, Current opinion in plant biology.

Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature

J. Feijó, L. Dolan, F. Borges, 2014, BMC Plant Biology.

Identification of differentially expressed genes in the heart precursor cells of the chick embryo.

J. Becker, J. Belo, A. T. Tavares, 2011, Gene expression patterns : GEP.

Cell-type-specific alternative splicing in the Arabidopsis germline

J. Becker, P. Barros, C. Misra, 2022, Plant physiology.

LegumeGRN: A Gene Regulatory Network Prediction Server for Functional and Comparative Studies

Jörg D. Becker, Christian Rogers, Michael Udvardi, 2013, PloS one.

Inhibition of glutamine synthetase by phosphinothricin leads to transcriptome reprograming in root nodules of Medicago truncatula.

J. Becker, H. Carvalho, A. Seabra, 2012, Molecular plant-microbe interactions : MPMI.

Hydroxyproline O‐arabinosyltransferase mutants oppositely alter tip growth in Arabidopsis thaliana and Physcomitrella patens

J. Feijó, Z. Lippman, J. Becker, 2015, The Plant journal : for cell and molecular biology.

Signalling by tips 1

J. Feijó, J. Becker, A. C. Certal, 2004 .

Whole Genome Analysis of Gene Expression Reveals Coordinated Activation of Signaling and Metabolic Pathways during Pollen-Pistil Interactions in Arabidopsis1[C][W]

Jörg D. Becker, Filipe Borges, J. Feijó, 2011, Plant Physiology.

Whole Genome Analysis of Gene Expression Reveals Coordinated Activation of Signaling and Metabolic Pathways during Pollen-Pistil Interactions in Arabidopsis 1 [ C ] [ W ]

J. Feijó, F. Borges, J. Becker, 2011 .

The OmpR Regulator of Burkholderia multivorans Controls Mucoid-to-Nonmucoid Transition and Other Cell Envelope Properties Associated with Persistence in the Cystic Fibrosis Lung

V. Cooper, J. Becker, L. M. Moreira, 2018, Journal of bacteriology.

Early programming of the oocyte epigenome temporally controls late prophase I transcription and chromatin remodelling

J. Secombe, J. Becker, P. Navarro-Costa, 2016, Nature Communications.

Regulator LdhR and d-Lactate Dehydrogenase LdhA of Burkholderia multivorans Play Roles in Carbon Overflow and in Planktonic Cellular Aggregate Formation

J. Becker, L. M. Moreira, I. N. Silva, 2017, Applied and Environmental Microbiology.

The regulator LdhR and the D-lactate dehydrogenase LdhA of Burkholderia 1 multivorans play a role in carbon overflow and in planktonic cellular 2 aggregates formation 3 4 Running title : Burkholderia multivorans suspended biofilm 5 6

J. Becker, L. M. Moreira, Tavares, 2017 .

Fifty years of sperm cell isolations: from structural to omic studies

J. Becker, M. Flores-Tornero, 2023, Journal of experimental botany.

AtNOT1 is required for gametophyte development in Arabidopsis.

J. Becker, L. Boavida, Patrícia A. Pereira, 2020, The Plant journal : for cell and molecular biology.

Absence of functional TolC protein causes increased stress response gene expression in Sinorhizobium meliloti

M. F. Mata, Ana M Cosme, J. Becker, 2010, BMC Microbiology.

Plant Evolution: What Does It Take To Be an Egg?

J. Becker, L. Boavida, 2016, Current Biology.

Potential mechanisms underlying response to effects of the fungicide pyrimethanil from gene expression profiling in Saccharomyces cerevisiae.

J. Becker, C. A. Viegas, Fátima N. Gil, 2014, Journal of agricultural and food chemistry.

Arabidopsis Tetraspanins are Confined to Discrete Expression Domains and Cell Types in Reproductive Tissues and Form Homo- and Hetero-dimers when Expressed in Yeast

J. Becker, P. Qin, S. McCormick, 2013 .

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

R. Martienssen, J. Feijó, R. Slotkin, 2009, Cell.

Mucoid morphotype variation of Burkholderia multivorans during chronic cystic fibrosis lung infection is correlated with changes in metabolism, motility, biofilm formation and virulence.

J. Becker, L. M. Moreira, D. Speert, 2011, Microbiology.