Antje Hirsekorn

发表

Global identification of functional microRNA-mRNA interactions in Drosophila

A. Akalin, U. Ohler, N. Mukherjee, 2019, Nature Communications.

Global identification of functional microRNA::mRNA interactions in Drosophila

A. Akalin, U. Ohler, N. Mukherjee, 2018, bioRxiv.

Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling

U. Ohler, Dilmurat Yusuf, Antje Hirsekorn, 2018, Genome Biology.

A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells.

E. Mazzoni, Shaun Mahony, R. Satija, 2017, Cell stem cell.

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in wildtype and cloche/npas4l mutant zebrafish embryos

S. Lacadie, A. Pombo, A. Akalin, 2020, bioRxiv.

A Multi-step Transcription al and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells Graphical

E. Mazzoni, Shaun Mahony, R. Satija, 2017 .

Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes

Ioannis Xenarios, Uwe Ohler, Markus Müller, 2020, Nature Communications.

A spectral analysis approach to detect actively translated open reading frames in high-resolution ribosome profiling data

B. Obermayer, M. Selbach, M. Landthaler, 2015, bioRxiv.

Detecting actively translated open reading frames in ribosome profiling data

Uwe Ohler, Neelanjan Mukherjee, Benedikt Obermayer, 2015, Nature Methods.

FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells

S. Lacadie, A. Akalin, B. Uyar, 2018, Developmental cell.

Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes

Brian J. Stevenson, Markus Müller, I. Xenarios, 2019, Nature Communications.

Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus

Gabriel V. Markov, C. Dieterich, C. Rödelsperger, 2015, BMC Evolutionary Biology.

Integrative classification of human coding and noncoding genes through RNA metabolism profiles

M. Pelizzola, U. Ohler, N. Mukherjee, 2016, Nature Structural &Molecular Biology.

Integrative classification of human coding and non-coding genes based on RNA metabolism profiles

M. Pelizzola, U. Ohler, N. Mukherjee, 2016, bioRxiv.

Quantification of translation uncovers the functions of the alternative transcriptome

U. Ohler, Lorenzo Calviello, Antje Hirsekorn, 2020, Nature Structural & Molecular Biology.

Quantification of translation uncovers the functions of the alternative transcriptome

U. Ohler, Lorenzo Calviello, Antje Hirsekorn, 2019, bioRxiv.

SaTAnn quantifies translation on the functionally heterogeneous transcriptome

U. Ohler, Lorenzo Calviello, Antje Hirsekorn, 2019 .

Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets via protocol-specific bias modeling

U. Ohler, Dilmurat Yusuf, Antje Hirsekorn, 2018, bioRxiv.

Determinants of promoter and enhancer transcription directionality in metazoans

S. Lacadie, U. Ohler, R. Zinzen, 2018, Nature Communications.

Determinants of Transcription Initiation Directionality in Metazoans

S. Lacadie, U. Ohler, R. Zinzen, 2017, bioRxiv.

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos

S. Lacadie, A. Pombo, A. Akalin, 2022, Cell genomics.

Identifying RBP Targets with RIP-seq.

U. Ohler, N. Mukherjee, H. Wessels, 2016, Methods in molecular biology.

RNA-binding proteins regulate aldosterone homeostasis in human steroidogenic cells

N. Mukherjee, K. Riemondy, Antje Hirsekorn, 2021, bioRxiv.

Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling

U. Ohler, Dilmurat Yusuf, Antje Hirsekorn, 2019, Genome Biology.

Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus

Gabriel V. Markov, C. Dieterich, C. Rödelsperger, 2015, BMC Evolutionary Biology.

Integrative classification of human coding and non-coding genes based on RNA metabolism profiles

U. Ohler, N. Mukherjee, Lorenzo Calviello, 2016, bioRxiv.

Quantification of translation uncovers the functions of the alternative transcriptome

U. Ohler, Lorenzo Calviello, Antje Hirsekorn, 2019, Nature Structural & Molecular Biology.

Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets via protocol-specific bias modeling

U. Ohler, Dilmurat Yusuf, Antje Hirsekorn, 2018, bioRxiv.