D. Farrell

发表

smallrnaseq: short non coding RNA-Seq analysis with Python

D. Farrell, 2017, bioRxiv.

The Identification of Circulating MiRNA in Bovine Serum and Their Potential as Novel Biomarkers of Early Mycobacterium avium subsp paratuberculosis Infection

S. Gordon, D. MacHugh, Ronan Shaughnessy, 2015, PloS one.

Progress in the prediction of pKa values in proteins

Sarah L. Williams, Jana K. Shen, J. Warwicker, 2011, Proteins.

Titration_DB: Storage and analysis of NMR‐monitored protein pH titration curves

J. Nielsen, L. McIntosh, P. B. Crowley, 2010, Proteins.

Analysis of Biobanked Serum from a Mycobacterium avium subsp paratuberculosis Bovine Infection Model Confirms the Remarkable Stability of Circulating miRNA Profiles and Defines a Bovine Serum miRNA Repertoire

S. Gordon, Ronan Shaughnessy, D. Farrell, 2015, PloS one.

Highly perturbed pKa values in the unfolded state of hen egg white lysozyme.

J. Nielsen, D. Farrell, F. O'Meara, 2012, Biophysical journal.

Capturing, sharing and analysing biophysical data from protein engineering and protein characterization studies

Barbara M. Tynan-Connolly, Michael A. Johnston, Chresten R. Søndergaard, 2010, Nucleic acids research.

Integrated computational prediction and experimental validation identifies promiscuous T cell epitopes in the proteome of Mycobacterium bovis

S. Gordon, K. Malone, A. Chubb, 2016, Microbial genomics.

Evidence for local and international spread of Mycobacterium avium subspecies paratuberculosis through whole genome sequencing of isolates from the island of Ireland.

S. Gordon, D. Farrell, R. Skuce, 2022, Veterinary microbiology.

epitopepredict: a tool for integrated MHC binding prediction

D. Farrell, 2021, bioRxiv.

Epitopemap: a web application for integrated whole proteome epitope prediction

S. Gordon, D. Farrell, 2015, BMC Bioinformatics.

Epitopemap: a web application for integrated whole proteome epitope prediction

Damien Farrell, Stephen V. Gordon, S. Gordon, 2015, BMC Bioinformatics.

Improving the analysis of NMR spectra tracking pH‐induced conformational changes: Removing artefacts of the electric field on the NMR chemical shift

Chresten R. Søndergaard, G. Pollastri, J. Nielsen, 2010, Proteins.

Protein dielectric constants determined from NMR chemical shift perturbations.

Damien Farrell, Jens Erik Nielsen, Kaare Teilum, 2013, Journal of the American Chemical Society.

Toward fast determination of protein stability maps: experimental and theoretical analysis of mutants of a Nocardiopsis prasina serine protease.

Thomas A. Poulsen, Michael A. Johnston, T. Borchert, 2012, Biochemistry.

Updated functional annotation of the Mycobacterium bovis AF2122/97 reference genome

S. Gordon, D. Farrell, J. Crispell, 2019, bioRxiv.

Draft Genome Sequences of Three Novel Acinetobacter Isolates from an Irish Commercial Pig Farm

D. Farrell, S. Fanning, F. Leonard, 2019, Microbiology Resource Announcements.

Independent genomic polymorphisms in the PknH serine threonine kinase locus during evolution of the Mycobacterium tuberculosis Complex affect virulence and host preference

J. Badiola, S. Gordon, A. Anel, 2020, PLoS pathogens.

On the development of protein pKa calculation algorithms

Nathan A. Baker, Damien Farrell, Jens Erik Nielsen, 2011, Proteins.

Remeasuring HEWL pKa values by NMR spectroscopy: Methods, analysis, accuracy, and implications for theoretical pKa calculations

Damien Farrell, Helen Webb, Kaare Teilum, 2011, Proteins.

Performance and Agreement Between WGS Variant Calling Pipelines Used for Bovine Tuberculosis Control: Toward International Standardization

S. Gordon, J. Álvarez, D. Farrell, 2021, Frontiers in Veterinary Science.

The TbD1 Locus Mediates a Hypoxia-Induced Copper Response in Mycobacterium bovis

S. Gordon, D. Farrell, J. Browne, 2022, Frontiers in Microbiology.

PROGRESS IN THE PREDICTION OF pK a VALUES IN PROTEINS

Nathan A. Baker, Emil Alexov, Damien Farrell, 2011 .

Identification of microRNAs in bovine faeces and their potential as biomarkers of Johne’s Disease

S. Gordon, J. Browne, Ronan Shaughnessy, 2020, Scientific Reports.

DataExplore: An Application for General Data Analysis in Research and Education

Damien Farrell, D. Farrell, 2016 .

METAPAPER DataExplore : An Application for General Data Analysis in Research and Education

D. Farrell, 2016 .

A collaborative environment for developing and validating predictive tools for protein biophysical characteristics

Damien Farrell, Jens Erik Nielsen, Michael A. Johnston, 2012, Journal of Computer-Aided Molecular Design.

The Application of MBSE to Inform Workforce Decision Making

Damien Farrell, Stuart Taylor, Thomas Bransden, 2017 .