D. Whiley

D. Whiley, S. Bialasiewicz, S. Lambert, 2009, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Merkel Cell Polyomavirus DNA in Respiratory Specimens from Children and Adults

D. Whiley, S. Bialasiewicz, S. Lambert, 2009, Emerging infectious diseases.

Rapid detection of NDM and VIM carbapenemase encoding genes by recombinase polymerase amplification and lateral flow–based detection

D. Paterson, D. Whiley, A. Irwin, 2021, European Journal of Clinical Microbiology & Infectious Diseases.

A 5'-nuclease real-time reverse transcriptase-polymerase chain reaction assay for the detection of a broad range of influenza A subtypes, including H5N1.

D. Whiley, T. Sloots, 2005, Diagnostic microbiology and infectious disease.

Rapid macrolide and amikacin resistance testing for Mycobacterium abscessus in people with cystic fibrosis.

S. Bell, C. Wainwright, D. Whiley, 2021, Journal of medical microbiology.

Identification of Mycobacterium abscessus complex and M. abscessus subsp. massiliense culture isolates by real-time assays.

D. Whiley, T. Sloots, M. Syrmis, 2015, Journal of medical microbiology.

Surveillance systems to monitor antimicrobial resistance in Neisseria gonorrhoeae: a global, systematic review, 1 January 2012 to 27 September 2020

David Bruce Lewis, J. Kaldor, R. Guy, 2022, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

Prevalence and impact of oprD mutations in Pseudomonas aeruginosa strains in 1 cystic fibrosis 2 3

S. Beatson, S. Bell, C. Wainwright, 2019 .

A comparison of ThinPrep against four non-volatile transport media for HPV testing at or near the point of care.

A. Vallely, D. Whiley, S. Badman, 2020, Pathology.

Observational Research in Childhood Infectious Diseases (ORChID): a dynamic birth cohort study

R. Ware, David Wang, D. Whiley, 2012, BMJ Open.

A real-time PCR assay for the detection of Neisseria gonorrhoeae in genital and extragenital specimens.

J. Bates, D. Whiley, T. Sloots, 2005, Diagnostic microbiology and infectious disease.

Over-diagnosis of rotavirus infection in infants due to detection of vaccine virus.

D. Whiley, S. Lambert, K. Grimwood, 2019, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Multivalent Rotavirus Vaccine and Wild-type Rotavirus Strain Shedding in Australian Infants: A Birth Cohort Study

R. Ware, D. Whiley, S. Lambert, 2018, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

False-negative results using Neisseria gonorrhoeae porA pseudogene PCR - a clinical gonococcal isolate with an N. meningitidis porA sequence, Australia, March 2011.

D. Whiley, S. Lambert, M. Nissen, 2011, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

A new confirmatory Neisseria gonorrhoeae real-time PCR assay targeting the porA pseudogene

J. Bates, D. Whiley, T. Sloots, 2004, European Journal of Clinical Microbiology and Infectious Diseases.

Screening for H7N9 influenza A by matrix gene-based real-time reverse-transcription PCR.

D. Whiley, S. Bialasiewicz, M. Nissen, 2014, Journal of virological methods.

High coverage of diverse invasive meningococcal serogroup B strains by the 4-component vaccine 4CMenB in Australia, 2007–2011: Concordant predictions between MATS and genetic MATS

D. Medini, D. Serruto, M. Pizza, 2021, Human vaccines & immunotherapeutics.

Comparison of DNA Extraction Methods for Microbial Community Profiling with an Application to Pediatric Bronchoalveolar Lavage Samples

Joshua N. Daly, P. Hugenholtz, D. Willner, 2012, PloS one.

Neisseria gonorrhoeae: The Pathogen, Diagnosis, and Antimicrobial Resistance

Monica Lahra, D. Whiley, D. Speers, 2015 .

Molecular characterisation of Neisseria gonorrhoeae associated with disseminated gonococcal infections in Queensland, Australia: a retrospective surveillance study

D. Whiley, C. Lau, Ella Trembizki, 2022, BMJ Open.

Antimicrobial susceptibility testing and molecular characterization of Neisseria gonorrhoeae in Tehran, Iran

D. Whiley, M. Pourmand, G. Pourmand, 2022, International journal of STD & AIDS.

HIV risk and gonococcal genotype: Opportunities to improve passive surveillance for prompt identification of syndemics?

R. Ware, D. Whiley, S. Lambert, 2022, Communicable diseases intelligence.

Azithromycin-resistant Neisseria gonorrhoeae spreading amongst men who have sex with men (MSM) and heterosexuals in New South Wales, Australia, 2017

Monica Lahra, D. Whiley, C. Buckley, 2018, The Journal of antimicrobial chemotherapy.

Estimating the prevalence of mixed-type gonococcal infections in Queensland, Australia.

J. Bates, Monica Lahra, D. Whiley, 2015, Sexual health.

One confirmed and one suspected case of pharyngeal gonorrhoea treatment failure following 500mg ceftriaxone in Sydney, Australia.

P. Read, A. McNulty, Monica Lahra, 2013, Sexual health.

Real-time PCR genotyping of Neisseria gonorrhoeae isolates using 14 informative single nucleotide polymorphisms on gonococcal housekeeping genes.

Monica Lahra, D. Whiley, M. Nissen, 2013, The Journal of antimicrobial chemotherapy.

Reduced susceptibility to ceftriaxone in Neisseria gonorrhoeae is spread internationally by genetically distinct gonococcal populations.

D. Whiley, S. Lambert, M. Nissen, 2011, The Journal of antimicrobial chemotherapy.

Enhancing Gonococcal Antimicrobial Resistance Surveillance: a Real-Time PCR Assay for Detection of Penicillinase-Producing Neisseria gonorrhoeae by Use of Noncultured Clinical Samples

D. Whiley, S. Lambert, M. Nissen, 2010, Journal of Clinical Microbiology.

Neisseria gonorrhoeae multi-antigen sequence typing using non-cultured clinical specimens

D. Whiley, S. Lambert, M. Nissen, 2009, Sexually Transmitted Infections.

Two cases of failed ceftriaxone treatment in pharyngeal gonorrhoea verified by molecular microbiological methods.

D. Whiley, T. Sloots, A. Limnios, 2009, Journal of medical microbiology.

Running Title: Non-culture based NG-MAST

D. Whiley, S. Lambert, M. Nissen, 2009 .

typing using non-cultured clinical specimens multi-antigen sequence Neisseria gonorrhoeae

D. Whiley, S. Lambert, M. Nissen, 2022 .

Genetic characterisation of Neisseria gonorrhoeae resistant to both ceftriaxone and azithromycin.

Monica Lahra, D. Whiley, J. Pearson, 2018, The Lancet. Infectious diseases.

Identification and Discrimination of Chlamydia trachomatis Ocular and Urogenital Strains and Major Phylogenetic Lineages by CtGEM Typing, A Double-Locus Genotyping Method.

D. Holt, D. Whiley, P. Giffard, 2019, Methods in molecular biology.

Changes in the rates of Neisseria gonorrhoeae antimicrobial resistance are primarily driven by dynamic fluctuations in common gonococcal genotypes

R. Guy, Monica Lahra, D. Whiley, 2016, The Journal of antimicrobial chemotherapy.

A national quality assurance survey of Neisseria gonorrhoeae testing.

G. Hogg, Monica Lahra, D. Whiley, 2014, Journal of medical microbiology.

The influence of target population on nonculture-based detection of markers of Neisseria gonorrhoeae antimicrobial resistance.

Monica Lahra, D. Whiley, S. Lambert, 2012, Sexual health.

Use of a novel screening PCR indicates presence of Neisseria gonorrhoeae isolates with a mosaic penA gene sequence in Australia.

J. Bates, D. Whiley, M. Nissen, 2007, Pathology.

Rapid detection of a chromosomally mediated penicillin resistance-associated ponA mutation in Neisseria gonorrhoeae using a real-time PCR assay.

F. Vernel-Pauillac, D. Whiley, F. Merien, 2006, FEMS microbiology letters.

A reliable and easy to transport quality control method for chlamydia and gonorrhoea molecular point of care testing.

R. Guy, H. Wand, A. Vallely, 2018, Pathology.

Antibiotic perturbation of mixed-strain Pseudomonas aeruginosa infection in patients with cystic fibrosis

S. Bell, D. Whiley, L. Sherrard, 2017, BMC Pulmonary Medicine.

Upper airway viruses and bacteria and clinical outcomes in children with cough

A. Chang, J. Acworth, D. Whiley, 2016, Pediatric pulmonology.

Viruses causing lower respiratory symptoms in young children: findings from the ORChID birth cohort

R. Ware, David Wang, D. Whiley, 2017, Thorax.

Molecular point-of-care testing for chlamydia and gonorrhoea in Indigenous Australians attending remote primary health services (TTANGO): a cluster-randomised, controlled, crossover trial.

J. Kaldor, R. Guy, H. Wand, 2018, The Lancet. Infectious diseases.

A sensitive, specific, and cost-effective multiplex reverse transcriptase-PCR assay for the detection of seven common respiratory viruses in respiratory samples.

D. Whiley, I. Mackay, M. Nissen, 2004, The Journal of molecular diagnostics : JMD.

False-negative results in nucleic acid amplification tests-do we need to routinely use two genetic targets in all assays to overcome problems caused by sequence variation?

D. Whiley, S. Bialasiewicz, S. Lambert, 2008, Critical reviews in microbiology.

Comparison of three in‐house multiplex PCR assays for the detection of Neisseria gonorrhoeae and Chlamydia trachomatis using real‐time and conventional detection methodologies

D. Whiley, T. Sloots, 2005, Pathology.

Enhancing influenza diagnostics to catch a shifting target.

D. Whiley, I. Mackay, M. Nissen, 2014, The Lancet. Infectious diseases.

Prevalence, codetection and seasonal distribution of upper airway viruses and bacteria in children with acute respiratory illnesses with cough as a symptom

A. Chang, J. Acworth, D. Whiley, 2016, Clinical Microbiology and Infection.

Detection of Human Respiratory Syncytial Virus in Respiratory Samples by LightCycler Reverse Transcriptase PCR

D. Whiley, I. Mackay, T. Sloots, 2002, Journal of Clinical Microbiology.

LightCycler Reverse Transcriptase PCR Virus in Respiratory Samples by Detection of Human Respiratory Syncytial

D. Whiley, I. Mackay, T. Sloots, 2002 .

Detection of novel influenza A(H1N1) virus by real-time RT-PCR.

A. Gould, D. Whiley, S. Bialasiewicz, 2009, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Mailed versus frozen transport of nasal swabs for surveillance of respiratory bacteria in remote Indigenous communities in Australia

D. Whiley, S. Lambert, T. Sloots, 2013, BMC Infectious Diseases.

Viral-bacterial co-infection in Australian Indigenous children with acute otitis media

A. Cheng, A. Leach, D. Whiley, 2011, BMC infectious diseases.

Prospective evaluation of beta-lactamase detection in penicillin susceptible Staphylococcus aureus by interpretation of the penicillin disc edge

D. Paterson, D. Whiley, P. Harris, 2019 .

Antiseptic mouthwash for gonorrhoea prevention (OMEGA): a randomised, double-blind, parallel-group, multicentre trial.

J. Kaldor, R. Guy, A. McNulty, 2021, Lancet. Infectious Diseases (Print).

Public health implications of molecular point-of-care testing for chlamydia and gonorrhoea in remote primary care services in Australia: a qualitative study

J. Kaldor, R. Guy, M. Shephard, 2015, BMJ Open.

The impact of COVID-19 epidemic phase and changes in mean viral loads: implications for SARS-CoV-2 testing strategies

M. Chatfield, D. Whiley, C. Buckley, 2021, Diagnostic Microbiology and Infectious Disease.

Impact of Competitive Inhibition and Sequence Variation upon the Sensitivity of Malaria PCR

D. Whiley, S. Bialasiewicz, M. Nissen, 2007, Journal of Clinical Microbiology.

Detection of human bocavirus in respiratory, fecal, and blood samples by real‐time PCR†

D. Whiley, S. Bialasiewicz, S. Lambert, 2009, Journal of medical virology.

Chinese herbal supplements the cause of thyrotoxicosis

H. Cox, D. Whiley, M. Nissen, 2022 .

Molecular surveillance for carbapenemase genes in carbapenem-resistant Pseudomonas aeruginosa in Australian patients with cystic fibrosis

S. Bell, D. Whiley, A. Tai, 2015, Pathology.

Preliminary Comparison of Three LightCycler PCR Assays for the Detection of Herpes Simplex Virus in Swab Specimens

D. Whiley, I. Mackay, T. Sloots, 2003, European Journal of Clinical Microbiology and Infectious Diseases.

Identification of Pseudomonas aeruginosa by a duplex real-time polymerase chain reaction assay targeting the ecfX and the gyrB genes.

S. Bell, C. Wainwright, D. Whiley, 2009, Diagnostic microbiology and infectious disease.

Author ' s response to reviews Title : Nasal swab samples and real-time polymerase chain reaction assays in community-based , longitudinal studies of respiratory viruses : the importance of sample integrity and quality control

R. Ware, D. Whiley, S. Lambert, 2013 .

Evaluation of phenotypic screening tests for carbapenemase production in Pseudomonas aeruginosa from patients with cystic fibrosis.

D. Paterson, S. Bell, D. Whiley, 2015, Journal of microbiological methods.

Global phylogeny of Treponema pallidum lineages reveals recent expansion and spread of contemporary syphilis

C. Wennerås, M. Unemo, B. Molini, 2021, Nature Microbiology.

Contemporary syphilis is characterised by rapid global spread of pandemic Treponema pallidum lineages

N. Thomson, C. Wennerås, M. Unemo, 2021, medRxiv.

Detection and differentiation of herpes simplex virus types 1 and 2 by a duplex LightCycler PCR that incorporates an internal control PCR reaction.

D. Whiley, I. Mackay, T. Sloots, 2004, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Point-of-care testing and treatment of sexually transmitted infections to improve birth outcomes in high-burden, low-income settings: Study protocol for a cluster randomized crossover trial (the WANTAIM Trial, Papua New Guinea)

R. Peeling, J. Kaldor, N. Low, 2019, Wellcome Open Research.

R. Peeling, J. Kaldor, N. Low, 2019, Wellcome open research.

Discovery of mcr-1-Mediated Colistin Resistance in a Highly Virulent Escherichia coli Lineage

S. Beatson, D. Paterson, J. Li, 2018, mSphere.

Neisseria gonorrhoeae isolates with high-level resistance to azithromycin in Australia.

J. Bates, Monica Lahra, D. Whiley, 2014, The Journal of antimicrobial chemotherapy.

Nucleic acid amplification testing for Neisseria gonorrhoeae: an ongoing challenge.

D. Whiley, T. Sloots, J. Tapsall, 2006, The Journal of molecular diagnostics : JMD.

An Ongoing Challenge

D. Whiley, T. Sloots, J. Tapsall, 2006 .

Comparison of the cobas 4800 CT/NG Test with Culture for Detecting Neisseria gonorrhoeae in Genital and Nongenital Specimens in a Low-Prevalence Population in New Zealand

D. Whiley, C. Bromhead, Mark E. Jones, 2013, Journal of Clinical Microbiology.

A multicentre double-blind randomised controlled trial evaluating the efficacy of daily use of antibacterial mouthwash against oropharyngeal gonorrhoea among men who have sex with men: the OMEGA (Oral Mouthwash use to Eradicate GonorrhoeA) study protocol

J. Kaldor, A. McNulty, J. Hocking, 2017, BMC Infectious Diseases.

MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction

S. Beatson, D. Paterson, V. Murigneux, 2021, BMC Genomics.

MicroPIPE: An end-to-end solution for high-quality complete bacterial genome construction

S. Beatson, D. Paterson, V. Murigneux, 2021, bioRxiv.

Title: MicroPIPE: An end-to-end solution for high-quality complete bacterial genome

S. Beatson, D. Paterson, V. Murigneux, 2021 .

Prevalence and impact of oprD mutations in Pseudomonas aeruginosa strains in 1 cystic fibrosis 2 3

S. Beatson, S. Bell, C. Wainwright, 2019 .

Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

S. Beatson, S. Bell, D. Whiley, 2018, BMC Genomics.

Use of whole genome sequencing to investigate an increase in Neisseria gonorrhoeae infection among women in urban areas of Australia

S. Beatson, Monica Lahra, D. Whiley, 2018, Scientific Reports.

Use of whole genome sequencing to investigate an outbreak of gonorrhoea among females in urban New South Wales, Australia, 2012 to 2014

S. Beatson, Monica Lahra, D. Whiley, 2017, bioRxiv.

A retrospective performance evaluation of an adenovirus real‐time PCR assay

D. Whiley, T. Sloots, K. Grimwood, 2014, Journal of medical virology.

Molecular amplification methods in diagnostic virology

D. Whiley, T. Sloots, 2016 .

Histo-blood group antigens and rotavirus vaccine virus shedding in Australian infants.

R. Ware, P. Sly, D. Whiley, 2022, Pathology.

Young Aboriginal people’s engagement with STI testing in the Northern Territory, Australia

P. Aggleton, J. Kaldor, R. Guy, 2020, BMC Public Health.

Effectiveness of a cough management algorithm at the transitional phase from acute to chronic cough in Australian children aged <15 years: protocol for a randomised controlled trial

Maree Toombs, A. Chang, M. Toombs, 2017, BMJ Open.

Retrospective Review of Treponema pallidum PCR and Serology Results: Are Both Tests Necessary?

D. Whiley, R. Norton, I. Gassiep, 2018, Journal of Clinical Microbiology.

Evaluation of Commercially Available Viral Transport Medium (VTM) for SARS-CoV-2 Inactivation and Use in Point-of-Care (POC) Testing

R. Guy, D. V. van Bockel, A. Kelleher, 2020, Viruses.

Respiratory Viruses in Neonates: A Prospective, Community-based Birth Cohort Study

R. Ware, D. Whiley, S. Lambert, 2016, The Pediatric infectious disease journal.

The ticking time bomb: escalating antibiotic resistance in Neisseria gonorrhoeae is a public health disaster in waiting.

Monica Lahra, D. Whiley, M. Nissen, 2012, The Journal of antimicrobial chemotherapy.

Chlamydia trachomatis, Neisseria gonorrhoeae, and Trichomonas vaginalis among women with genitourinary infection and pregnancy-related complications in Tehran: A cross-sectional study

D. Whiley, F. A. Asbagh, M. Pourmand, 2020, International journal of STD & AIDS.

Contamination of SARS-CoV-2 RT-PCR probes at the oligonucleotide manufacturer

D. Whiley, C. Buckley, C. Bletchly, 2020, Pathology.

Cooperative Recognition of Internationally Disseminated Ceftriaxone-Resistant Neisseria gonorrhoeae Strain

W. Demczuk, I. Martin, B. Lefebvre, 2018, Emerging infectious diseases.

Gonococcal antimicrobial resistance in the Western Pacific Region

Monica Lahra, D. Whiley, Y. Lo, 2013, Sexually Transmitted Infections.

Exploring 'best practice' for nucleic acid detection of Neisseria gonorrhoeae.

S. Garland, D. Whiley, S. Tabrizi, 2008, Sexual health.

Detection and Differentiation of Human Polyomaviruses JC and BK by LightCycler PCR

D. Whiley, I. Mackay, T. Sloots, 2001, Journal of Clinical Microbiology.

PCR methods for rotavirus detection in stool specimens

D. Whiley, S. Lambert, K. Grimwood, 2014 .

A real-time, quantitative PCR method using hydrolysis probes for the monitoring of Plasmodium falciparum load in experimentally infected human volunteers

D. Whiley, S. Bialasiewicz, M. Nissen, 2011, Malaria Journal.

Treatment guidelines after an outbreak of azithromycin-resistant Neisseria gonorrhoeae in South Australia.

Monica Lahra, D. Whiley, Ella Trembizki, 2017, The Lancet. Infectious diseases.

Failure of 500 mg of ceftriaxone to eradicate pharyngeal gonorrhoea, Australia.

G. Hogg, Monica Lahra, D. Whiley, 2013, The Journal of antimicrobial chemotherapy.

Further evidence that the IS481 target is suitable for real-time PCR detection of Bordetella pertussis.

H. Cox, D. Whiley, M. Nissen, 2013, Pathology.

Evaluation of the SpeeDx Carba (beta) multiplex real-time PCR assay for detection of NDM, KPC, OXA-48-like, IMP-4-like and VIM carbapenemase genes

D. Paterson, D. Whiley, K. Cottrell, 2019, BMC Infectious Diseases.

A simple approach for preparing real-time PCR positive reaction controls for rare or emerging viruses.

A. Gould, D. Whiley, S. Bialasiewicz, 2010, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Enhanced gonococcal antimicrobial surveillance in the era of ceftriaxone resistance: a real-time PCR assay for direct detection of the Neisseria gonorrhoeae H041 strain.

M. Ohnishi, Monica Lahra, D. Whiley, 2012, The Journal of antimicrobial chemotherapy.

Comparing Nose-Throat Swabs and Nasopharyngeal Aspirates Collected From Children With Symptoms for Respiratory Virus Identification Using Real-Time Polymerase Chain Reaction

D. Whiley, S. Lambert, M. Nissen, 2008, Pediatrics.

Emergence and spread of ciprofloxacin-resistant Neisseria gonorrhoeae in New South Wales, Australia: lessons from history.

Monica Lahra, D. Whiley, C. Lau, 2019, The Journal of antimicrobial chemotherapy.

Opportunities and pitfalls of molecular testing for detecting sexually transmitted pathogens

D. Whiley, J. Twin, S. Tabrizi, 2015, Pathology.

Molecular approaches to enhance surveillance of gonococcal antimicrobial resistance

J. Kaldor, R. Guy, Monica Lahra, 2014, Nature Reviews Microbiology.

Polymerase chain reaction-based screening for the ceftriaxone-resistant Neisseria gonorrhoeae F89 strain.

M. Ohnishi, Monica Lahra, D. Whiley, 2013, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

Polymerase chain reaction-based screening for the ceftriaxone-resistant Neisseria gonorrhoeae F 89 strain

M. Ohnishi, Monica Lahra, D. Whiley, 2013 .

A duplex Neisseria gonorrhoeae real-time polymerase chain reaction assay targeting the gonococcal porA pseudogene and multicopy opa genes.

D. Whiley, M. Nissen, T. Sloots, 2008, Diagnostic microbiology and infectious disease.

Diversity of penA Alterations and Subtypes in Neisseria gonorrhoeae Strains from Sydney, Australia, That Are Less Susceptible to Ceftriaxone

John W. Tapsall, D. Whiley, T. Sloots, 2007, Antimicrobial Agents and Chemotherapy.

A randomised trial of point-of-care tests for chlamydia and gonorrhoea infections in remote Aboriginal communities: Test, Treat ANd GO- the “TTANGO” trial protocol

J. Kaldor, R. Guy, H. Wand, 2013, BMC Infectious Diseases.

Systematic review and survey of Neisseria gonorrhoeae ceftriaxone and azithromycin susceptibility data in the Asia Pacific, 2011 to 2016

Monica Lahra, D. Whiley, T. Wi, 2019, PloS one.

Optimized Method for Bacterial Nucleic Acid Extraction from Positive Blood Culture Broth for Whole-Genome Sequencing, Resistance Phenotype Prediction, and Downstream Molecular Applications

D. Paterson, D. Whiley, Stephan Beisken, 2022, bioRxiv.

Replacement of healthcare-associated MRSA by community-associated MRSA in Queensland: confirmation by genotyping.

D. Paterson, D. Whiley, G. Nimmo, 2013, The Journal of infection.

High prevalence of pulmonary tuberculosis among female sex workers, men who have sex with men, and transgender women in Papua New Guinea

J. Kaldor, A. Vallely, D. Whiley, 2021, Tropical Medicine and Health.

Point-of-care tests for the diagnosis of Neisseria gonorrhoeae infection: a systematic review of operational and performance characteristics

J. Kaldor, R. Guy, D. Whiley, 2012, Sexually Transmitted Infections.

Improved detection of genetic markers of antimicrobial resistance by hybridization probe-based melting curve analysis using primers to mask proximal mutations: examples include the influenza H275Y substitution.

D. Whiley, M. Nissen, T. Sloots, 2012, The Journal of antimicrobial chemotherapy.

Simple, Rapid, and Inexpensive Detection of Neisseria gonorrhoeae Resistance Mechanisms Using Heat-Denatured Isolates and SYBR Green-Based Real-Time PCR

D. Whiley, S. Lambert, M. Nissen, 2009, Antimicrobial Agents and Chemotherapy.

Melting curve analysis using hybridisation probes: limitations in microbial molecular diagnostics.

D. Whiley, T. Sloots, 2005, Pathology (Sydney).

Substantial Increases in Chlamydia and Gonorrhea Positivity Unexplained by Changes in Individual-Level Sexual Behaviors Among Men Who Have Sex With Men in an Australian Sexual Health Service From 2007 to 2013

D. Whiley, C. Fairley, C. Bradshaw, 2015, Sexually transmitted diseases.

parC Variants in Mycoplasma genitalium: Trends over Time and Association with Moxifloxacin Failure

S. Garland, D. Whiley, E. Plummer, 2022, Antimicrobial agents and chemotherapy.

Individualised treatment of Mycoplasma genitalium infection-incorporation of fluoroquinolone resistance testing into clinical care.

D. Whiley, G. Murray, C. Bradshaw, 2022, The Lancet. Infectious diseases.

Evaluation of the ResistancePlus GC (beta) assay: a commercial diagnostic test for the direct detection of ciprofloxacin susceptibility or resistance in Neisseria gonorrhoeae.

D. Whiley, Ella Trembizki, Simon M Erskine, 2019, The Journal of antimicrobial chemotherapy.

Levels of Mycoplasma genitalium Antimicrobial Resistance Differ by Both Region and Gender in the State of Queensland, Australia: Implications for Treatment Guidelines

D. Whiley, C. Bradshaw, Ella Trembizki, 2019, Journal of Clinical Microbiology.

High levels of macrolide-resistant Mycoplasma genitalium in Queensland, Australia

D. Whiley, Ella Trembizki, C. Buckley, 2017, Journal of medical microbiology.

Detection of Neisseria gonorrhoeae Isolates from Tonsils and Posterior Oropharynx

J. Hocking, D. Whiley, C. Bradshaw, 2015, Journal of Clinical Microbiology.

Sampling technique is important for optimal isolation of pharyngeal gonorrhoea

D. Whiley, C. Bradshaw, M. Bissessor, 2013, Sexually Transmitted Infections.

Evidence that the gonococcal porA pseudogene is present in a broad range of Neisseria gonorrhoeae strains; suitability as a diagnostic target

F. Vernel-Pauillac, T. Anderson, D. Whiley, 2006, Pathology.

From zero to zero in 100 years: gonococcal antimicrobial resistance

Monica Lahra, D. Whiley, J. Dillon, 2016 .

Mycoplasma genitalium: enhanced management using expanded resistance-guided treatment strategies.

D. Whiley, G. Murray, C. Bradshaw, 2022, Sexual Health.

Evaluation of the SpeeDx MG parC (Beta) PCR Assay for Rapid Detection of Mycoplasma genitalium Quinolone Resistance-Associated Mutations

D. Whiley, Kym Lowry, E. Sweeney, 2020, Journal of Clinical Microbiology.

Genotyping of Mycoplasma genitalium Suggests De Novo Acquisition of Antimicrobial Resistance in Queensland, Australia

D. Whiley, C. Bletchly, G. Nimmo, 2020, Journal of Clinical Microbiology.

Evaluation of the ResistancePlus MG FleXible Cartridge for Near-Point-of-Care Testing of Mycoplasma genitalium and Associated Macrolide Resistance Mutations

D. Whiley, C. Bletchly, G. Nimmo, 2020, Journal of Clinical Microbiology.

Mycoplasma genitalium infections can comprise a mixture of both fluoroquinolone-susceptible and fluoroquinolone-resistant strains.

D. Whiley, Kym Lowry, C. Bletchly, 2021, The Journal of antimicrobial chemotherapy.

Novel probe-based melting curve assays for the characterization of fluoroquinolone resistance in Mycoplasma genitalium

D. Whiley, G. Murray, C. Bradshaw, 2022, The Journal of antimicrobial chemotherapy.

Can ParC Ser83Ile status predict fluoroquinolone efficacy in Mycoplasma genitalium infection? - Authors' reply.

D. Whiley, G. Murray, C. Bradshaw, 2022, The Lancet. Infectious diseases.

Modelling response strategies for controlling gonorrhoea outbreaks in men who have sex with men in Australia

David Bruce Lewis, J. Kaldor, R. Guy, 2021, PLoS Comput. Biol..

Identifying factors that lead to the persistence of imported gonorrhoeae strains: a modelling study

M. Law, D. Whiley, B. Donovan, 2016, Sexually Transmitted Infections.

Modelling outbreak response strategies for preventing spread of emergent Neisseria gonorrhoeae strains in men who have sex with men in Australia

David Bruce Lewis, J. Kaldor, R. Guy, 2021, medRxiv.

Treatment for pharyngeal gonorrhoea under threat.

Monica Lahra, D. Whiley, J. Wood, 2018, The Lancet. Infectious diseases.

Peer-delivered point-of-care testing for Chlamydia trachomatis and Neisseria gonorrhoeae within an urban community setting: a cross-sectional analysis.

C. Gilks, D. Whiley, S. Badman, 2020, Sexual health.

A diagnostic evaluation of a molecular assay used for testing and treating anorectal chlamydia and gonorrhoea infections at the point-of-care in Papua New Guinea.

J. Kaldor, R. Guy, A. Vallely, 2019, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Mycoplasma genitalium macrolide and fluoroquinolone resistance in pregnant women in Papua New Guinea

N. Low, W. Pomat, A. Vallely, 2022, Sexually Transmitted Infections.

macrolide and fluoroquinolone resistance in pregnant women in Papua New Guinea

W. Pomat, A. Vallely, D. Whiley, 2022 .

Mixed gonococcal infections in a high-risk population, Sydney, Australia 2015: implications for antimicrobial resistance surveillance?

D. Lewis, Monica Lahra, D. Whiley, 2017, The Journal of antimicrobial chemotherapy.

A field evaluation of a new molecular-based point-of-care test for chlamydia and gonorrhoea in remote Aboriginal health services in Australia.

J. Kaldor, R. Guy, D. Whiley, 2015, Sexual health.

Exploring the implications for coincidental treatment of Mycoplasma genitalium infection in Neisseriagonorrhoeae-positive patients

D. Whiley, Ella Trembizki, E. Sweeney, 2021, JAC-antimicrobial resistance.

Neisseria gonorrhoeae Sequence Typing for Antimicrobial Resistance, a Novel Antimicrobial Resistance Multilocus Typing Scheme for Tracking Global Dissemination of N. gonorrhoeae Strains

G. Domselaar, W. Demczuk, I. Martin, 2017, Journal of Clinical Microbiology.

Neisseria gonorrhoeae False-Positive Result Obtained from a Pharyngeal Swab by Using the Roche cobas 4800 CT/NG Assay in New Zealand in 2012

D. Whiley, C. Bromhead, A. Upton, 2013, Journal of Clinical Microbiology.

The Molecular Epidemiology and Antimicrobial Resistance of Neisseria gonorrhoeae in Australia: A Nationwide Cross-Sectional Study, 2012.

J. Kaldor, R. Guy, H. Wand, 2016, Clinical Infectious Diseases.

A new multidrug-resistant strain of Neisseria gonorrhoeae in Australia.

Monica Lahra, D. Whiley, N. Ryder, 2014, The New England journal of medicine.

Solithromycin versus ceftriaxone plus azithromycin for the treatment of uncomplicated genital gonorrhoea (SOLITAIRE-U): a randomised phase 3 non-inferiority trial.

A. McNulty, J. Hocking, A. Avery, 2019, The Lancet. Infectious diseases.

D. Eyre, Monica Lahra, D. Whiley, 2019, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

Lessons learnt from ceftriaxone-resistant gonorrhoea in the UK and Australia.

Monica Lahra, D. Whiley, H. Fifer, 2020, The Lancet. Infectious diseases.

The Australian Gonococcal Surveillance Programme 1979–2017

Monica M. Lahra, Cr Robert George, David M. Whiley, 2017 .

Improved sensitivity from pooled urine, pharyngeal and rectal specimens when using a molecular assay for the detection of chlamydia and gonorrhoea near point of care

C. Gilks, D. Whiley, S. Badman, 2020, Sexually Transmitted Infections.

Reduced sensitivity from pooled urine, pharyngeal and rectal specimens when using a molecular assay for the detection of chlamydia and gonorrhoea near the point of care.

C. Gilks, D. Whiley, S. Badman, 2020, Sexual health.

Direct Detection of penA Gene Associated with Ceftriaxone-Resistant Neisseria gonorrhoeae FC428 Strain by Using PCR

Monica Lahra, D. Whiley, G. Nimmo, 2018, Emerging infectious diseases.

False-negative Chlamydia polymerase chain reaction result caused by a cryptic plasmid-deficient Chlamydia trachomatis strain in Australia.

D. Whiley, C. Bletchly, Rita Gupta, 2019, Sexual health.

Molecular test for chlamydia and gonorrhoea used at point of care in remote primary healthcare settings: a diagnostic test evaluation

J. Kaldor, R. Guy, H. Wand, 2018, Sexually Transmitted Infections.

A preliminary evaluation of a new GeneXpert (Gx) molecular point-of-care test for the detection of Trichomonas vaginalis

R. Guy, D. Whiley, S. Tabrizi, 2015, Sexually Transmitted Infections.

Persistence of Neisseria gonorrhoeae DNA following treatment for pharyngeal and rectal gonorrhea is influenced by antibiotic susceptibility and reinfection.

J. Hocking, Monica Lahra, D. Whiley, 2015, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Molecular Antimicrobial Resistance Surveillance for Neisseria gonorrhoeae, Northern Territory, Australia

J. Kaldor, R. Guy, Monica Lahra, 2017, Emerging infectious diseases.

In Vitro Activity of Ertapenem versus Ceftriaxone against Neisseria gonorrhoeae Isolates with Highly Diverse Ceftriaxone MIC Values and Effects of Ceftriaxone Resistance Determinants: Ertapenem for Treatment of Gonorrhea?

M. Unemo, M. Ohnishi, Monica Lahra, 2012, Antimicrobial Agents and Chemotherapy.

Whole-genome sequencing as an improved means of investigating Neisseria gonorrhoeae treatment failures.

S. Beatson, Monica Lahra, D. Whiley, 2019, Sexual health.

Enhanced molecular surveillance in response to the detection of extensively resistant gonorrhoea in Australia.

Monica Lahra, D. Whiley, J. Robson, 2020, The Journal of antimicrobial chemotherapy.

Real-time PCR detection of Neisseria gonorrhoeae susceptibility to penicillin.

R. Guy, Monica Lahra, D. Whiley, 2016, The Journal of antimicrobial chemotherapy.

Direct real-time PCR-based detection of Neisseria gonorrhoeae 23S rRNA mutations associated with azithromycin resistance.

J. Kaldor, R. Guy, Monica Lahra, 2015, The Journal of antimicrobial chemotherapy.

Prospects of untreatable gonorrhea and ways forward.

M. Unemo, Monica Lahra, D. Whiley, 2015, Future microbiology.

Penicillinase-Producing Plasmid Types in Neisseria gonorrhoeae Clinical Isolates from Australia

Monica Lahra, D. Whiley, Ella Trembizki, 2014, Antimicrobial Agents and Chemotherapy.

Characterization of a Novel Neisseria gonorrhoeae Penicillinase-Producing Plasmid Isolated in Australia in 2012

Monica Lahra, D. Whiley, Ella Trembizki, 2014, Antimicrobial Agents and Chemotherapy.

Title: Penicillinase-producing plasmid types of Neisseria gonorrhoeae clinical isolates from

Andrew, D. Whiley, Ella Trembizki, 2014 .

The Prevalence of Antimicrobial Resistant Neisseria gonorrhoeae in Papua New Guinea: A Systematic Review and Meta-Analysis

A. Vallely, M. Chatfield, D. Whiley, 2022, International journal of environmental research and public health.

Low positive predictive value of a nucleic acid amplification test for nongenital Neisseria gonorrhoeae infection in homosexual men.

D. Whiley, D. Templeton, A. Grulich, 2008, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

An example of competitive inhibition in a monoplex real-time PCR as a cause of reduced fluorescent signal response.

A. Gould, D. Whiley, J. Kattenbelt, 2009, Pathology.

Are sex norms the norm in gonococcal surveillance?

D. Whiley, Monica M Lahra, Ratan L. Kundu, 2020, The Lancet. Microbe.

Reduced susceptibility to ceftriaxone in Neisseria gonorrhoeae is associated with mutations G542S, P551S and P551L in the gonococcal penicillin-binding protein 2.

D. Whiley, S. Lambert, M. Nissen, 2010, The Journal of antimicrobial chemotherapy.

Neisseria gonorrhoeae NAAT - a problem down under

D. Whiley, M. Nissen, T. Sloots, 2007 .

A real-time PCR assay for the detection of Neisseria gonorrhoeae by LightCycler.

D. Whiley, I. Mackay, T. Sloots, 2002, Diagnostic microbiology and infectious disease.

CtGEM typing: Discrimination of Chlamydia trachomatis ocular and urogenital strains and major evolutionary lineages by high resolution melting analysis of two amplified DNA fragments

D. Holt, D. Whiley, S. Lambert, 2018, PloS one.

Decreased susceptibility to cephalosporins among gonococci?

Monica Lahra, D. Whiley, B. Donovan, 2014, The Lancet. Infectious diseases.

Simultaneous Detection and Differentiation of Human Polyomaviruses JC and BK by a Rapid and Sensitive PCR-ELAHA Assay and a Survey of the JCV Subtypes Within an Australian Population

D. Whiley, I. Mackay, K. Arden, 2003 .

A comparison of ThinPrep-PreservCyt against four non-volatile transport media for HPV testing at or near the point of care

J. Kaldor, A. Vallely, D. Whiley, 2020, bioRxiv.

Evaluation of the SpeeDx ResistancePlus® GC and SpeeDx GC 23S 2611 (beta) molecular assays for prediction of antimicrobial resistance/susceptibility to ciprofloxacin and azithromycin in Neisseria gonorrhoeae.

V. Miriagou, M. Unemo, V. Kirjavainen, 2020, The Journal of antimicrobial chemotherapy.

A Neisseria gonorrhoeae strain with a meningococcal mtrR sequence.

J. Bates, Monica Lahra, D. Whiley, 2014, Journal of medical microbiology.

Protocol for the use of enzyme-linked hybridization assays for genital ulcer disease.

D. Whiley, S. Bialasiewicz, I. Mackay, 2012, Methods in molecular biology.

Protocol for the molecular detection of antibiotic resistance mechanisms in Neisseria gonorrhoeae.

D. Whiley, M. Nissen, T. Sloots, 2012, Methods in molecular biology.

Direct urine polymerase chain reaction for chlamydia and gonorrhoea: a simple means of bringing high-throughput rapid testing to remote settings?

J. Kaldor, R. Guy, D. Whiley, 2013, Sexual health.

Point-of-care testing and treatment of sexually transmitted and genital infections during pregnancy in Papua New Guinea (WANTAIM trial): protocol for an economic evaluation alongside a cluster-randomised trial

R. Peeling, J. Kaldor, N. Low, 2021, BMJ Open.

Identification of Australian human respiratory syncytial virus strains containing a 60-nucleotide duplication within the G glycoprotein gene.

D. Whiley, L. Sammels, M. Nissen, 2008, Pathology.

High rate of asymptomatic colonisation with antimicrobial-resistant E. coli in Australian returned travellers.

D. Whiley, C. Lau, L. Furuya-Kanamori, 2021, Journal of travel medicine.

Molecular Assays for Detection of Human Metapneumovirus

D. Whiley, I. Mackay, M. Nissen, 2003, Journal of Clinical Microbiology.

Further evidence to support the individualised treatment of gonorrhoea with ciprofloxacin.

J. Kaldor, R. Guy, Monica Lahra, 2016, The Lancet. Infectious diseases.

A real-time PCR assay for direct characterization of the Neisseria gonorrhoeae GyrA 91 locus associated with ciprofloxacin susceptibility.

R. Guy, Monica Lahra, D. Whiley, 2016, The Journal of antimicrobial chemotherapy.

High-throughput molecular typing of microbes using the Sequenom Massarray platform

D. Whiley, M. Nissen, T. Sloots, 2013 .

Sequence variation in primer targets affects the accuracy of viral quantitative PCR.

D. Whiley, T. Sloots, Theo P Sloots, 2005, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Detection of viruses in weekly stool specimens collected during the first 2 years of life: A pilot study of five healthy Australian infants in the rotavirus vaccine era

R. Ware, D. Whiley, S. Lambert, 2016, Journal of medical virology.

Cytomegalovirus in children undergoing haematopoietic stem cell transplantation: a diagnostic and therapeutic approach to antiviral resistance

D. Whiley, A. Irwin, J. Clark, 2023, Frontiers in Pediatrics.

The Middle East and hepatitis C virus infection: does it need special attention?

J. Kaldor, R. Guy, Monica Lahra, 2016 .

Travel-associated lineages and unique endemic antimicrobial-susceptible lineages of Neisseria gonorrhoeae predominate in Western Australia

D. Mak, M. Wise, D. Whiley, 2023, Microbial genomics.

The need for a commercial test using the penA60 allele to identify ceftriaxone-resistant Neisseria gonorrhoeae.

Monica Lahra, D. Whiley, Jacob Tickner, 2022, The Lancet. Infectious diseases.

Proof-of-concept, rapid, instrument-free molecular detection of Neisseria gonorrhoeae and ciprofloxacin susceptibility.

D. Paterson, Monica Lahra, D. Whiley, 2022, Journal of Antimicrobial Chemotherapy.

A universal reagent for detection of emerging diseases using bioengineered multifunctional yeast nanofragments.

Alain Wuethrich, M. Trau, C. Howard, 2023, Nature nanotechnology.

Rapid molecular detection of CMY-2, and CTX-M group 1 and 9 variants via recombinase polymerase amplification

D. Whiley, A. Irwin, M. Bauer, 2023, JAC-antimicrobial resistance.

Co-detection and discrimination of six human herpesviruses by multiplex PCR-ELAHA.

D. Whiley, I. Mackay, K. Arden, 2003, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Further Questions Regarding the Role of Mosaic penA Sequences in Conferring Reduced Susceptibility to Ceftriaxone in Neisseria gonorrhoeae

D. Whiley, T. Sloots, J. Tapsall, 2006, Antimicrobial Agents and Chemotherapy.

Emerging respiratory agents: New viruses for old diseases?

D. Whiley, S. Lambert, M. Nissen, 2008, Journal of Clinical Virology.

Alterations of the pilQ gene in Neisseria gonorrhoeae are unlikely contributors to decreased susceptibility to ceftriaxone and cefixime in clinical gonococcal strains.

M. Unemo, S. Jacobsson, D. Whiley, 2010, Journal of Antimicrobial Chemotherapy.

Detection of Neisseria meningitidis by LightCycler PCR.

D. Whiley, I. Mackay, T. Sloots, 2003, Pathology (Sydney).

Detection of Neisseria Meningitidis in Clinical Samples by a Duplex Real-Time PCR Targeting the porA and ctrA Genes

D. Whiley, I. Mackay, T. Sloots, 2012, Molecular Diagnosis.

High-throughput single-nucleotide polymorphism-based typing of shared Pseudomonas aeruginosa strains in cystic fibrosis patients using the Sequenom iPLEX platform.

S. Bell, C. Wainwright, D. Whiley, 2013, Journal of medical microbiology.

A real-time, quantitative PCR method using hydrolysis probes for the monitoring of Plasmodium falciparum load in experimentally infected human volunteers.

D. Whiley, S. Bialasiewicz, M. Nissen, 2011, Malaria journal.

Multitarget PCR Assay for Direct Detection of Penicillinase-Producing Neisseria gonorrhoeae for Enhanced Surveillance of Gonococcal Antimicrobial Resistance

R. Guy, Monica Lahra, D. Whiley, 2015, Journal of Clinical Microbiology.

gyrA Mutations in Mycoplasma genitalium and Their Contribution to Moxifloxacin Failure: Time for the Next Generation of Resistance-Guided Therapy

S. Garland, D. Whiley, E. Plummer, 2023, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Presence of the newly discovered human polyomaviruses KI and WU in Australian patients with acute respiratory tract infection

D. Whiley, S. Bialasiewicz, S. Lambert, 2008, Journal of Clinical Virology.

Development and evaluation of real-time PCR assays for the detection of the newly identified KI and WU polyomaviruses

A. Gould, D. Whiley, S. Bialasiewicz, 2007, Journal of Clinical Virology.

Use of whole genome sequencing to investigate an increase in Neisseria gonorrhoeae infection among women in urban areas of Australia

S. Beatson, Monica Lahra, D. Whiley, 2018, Scientific Reports.

eCommons@AKU eCommons@AKU

H. Wand, A. Vallely, D. Whiley, 2022 .

A real-time, quantitative PCR method using hydrolysis probes for the monitoring of Plasmodium falciparum load in experimentally infected human volunteers

D. Whiley, S. Bialasiewicz, M. Nissen, 2011, Malaria Journal.

Rapid expansion of Neisseria gonorrhoeae ST7827 clone in Australia, with variable ceftriaxone phenotype unexplained by genotype.

D. Whiley, S. V. van Hal, E. Kerr, 2023, The Journal of antimicrobial chemotherapy.

Use of whole genome sequencing to investigate an outbreak of gonorrhoea among females in urban New South Wales, Australia, 2012 to 2014

S. Beatson, Monica Lahra, D. Whiley, 2017, bioRxiv.

TITLE: Prevalence and impact of oprD mutations in Pseudomonas aeruginosa strains in 1 cystic fibrosis 2

S. Beatson, S. Bell, C. Wainwright, 2019 .

Within-host whole genome analysis of an antibiotic resistant Pseudomonas aeruginosa strain sub-type in cystic fibrosis

S. Beatson, D. Whiley, Nouri L. Ben Zakour, 2017, PloS one.

Rapid single-nucleotide polymorphism-based identification of clonal Pseudomonas aeruginosa isolates from patients with cystic fibrosis by the use of real-time PCR and high-resolution melting curve analysis.

S. Bell, C. Wainwright, D. Whiley, 2011, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Point-of-care tests for the diagnosis of Neisseria gonorrhoeae infection: a systematic review of operational and performance characteristics

J. Kaldor, R. Guy, D. Whiley, 2012, Sexually Transmitted Infections.

Antimicrobial susceptibility assays for Neisseria gonorrhoeae: a proof-of-principle population-based retrospective analysis.

D. Whiley, D. Lewis, Monica M Lahra, 2023, The Lancet. Microbe.

Sequence variation can affect the performance of minor groove binder TaqMan probes in viral diagnostic assays.

D. Whiley, T. Sloots, 2006, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Decreased Neisseria gonorrhoeae genotypic diversity following COVID-19 restrictions in Queensland, Australia 2020

D. Whiley, Ella Trembizki, E. Sweeney, 2023, Epidemiology and Infection.

Molecular Antimicrobial Resistance Surveillance for Neisseria gonorrhoeae, Northern Territory, Australia

J. Kaldor, R. Guy, Monica Lahra, 2017, Emerging infectious diseases.

Neisseria gonorrhoeae isolates with high-level resistance to azithromycin in Australia.

J. Bates, Monica Lahra, D. Whiley, 2014, The Journal of antimicrobial chemotherapy.