J. Ozik

发表

Best Practices Integrating Social Sciences into Social Ecological Systems Science: Future Directions for Building a More Resilient America

S. Bankes, W. Rand, M. Altaweel, 2015 .

Understanding institutions for water allocation and exchange: Insights from dynamic agent‐based modeling

John T. Murphy, M. Altaweel, R. Lammers, 2019, WIREs Water.

Water Relationships in the U.S. Southwest: Characterizing Water Management Networks Using Natural Language Processing

Andrew Kliskey, Jonathan Ozik, Nicholson T. Collier, 2014 .

Experiences in Developing a Distributed Agent-based Modeling Toolkit with Python

Nicholson T. Collier, N. Collier, E. Tatara, 2020, 2020 IEEE/ACM 9th Workshop on Python for High-Performance and Scientific Computing (PyHPC).

Socio-Structural and Neighborhood Predictors of Incident Criminal Justice Involvement in a Population-Based Cohort of Young Black MSM and Transgender Women

K. Fujimoto, N. Harawa, J. Ozik, 2020, Journal of Urban Health.

Characterization and Valuation of the Uncertainty of Calibrated Parameters in Microsimulation Decision Models

Nicholson T. Collier, Amy B. Knudsen, K. Kuntz, 2019, Frontiers in Physiology.

Extreme-Scale Dynamic Exploration of a Distributed Agent-Based Model With the EMEWS Framework

Justin M. Wozniak, Charles M. Macal, Jonathan Ozik, 2018, IEEE Transactions on Computational Social Systems.

Characterization and Valuation of the Uncertainty of Calibrated Parameters in Microsimulation Decision Models

K. Kuntz, A. Knudsen, N. Collier, 2022, Frontiers in Physiology.

A Community Roadmap for Scientific Workflows Research and Development

Bartosz Balis, Lavanya Ramakrishnan, Henri Casanova, 2021, 2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS).

Do partner services linked to molecular clusters yield people with viremia or new HIV?

Camden J. Hallmark, K. Fujimoto, N. Benbow, 2021, AIDS.

Impact of changes in protective behaviors and out-of-household activities by age on COVID-19 transmission and hospitalization in Chicago, Illinois

M. MacDonell, H. Pollack, C. Macal, 2022, Annals of Epidemiology.

Model Exploration of an Information-Based Healthcare Intervention Using Parallelization and Active Learning

Nicholson T. Collier, Jennifer A. Makelarski, E. Huang, 2020, J. Artif. Soc. Soc. Simul..

Mechanical Alignment of Prolate Cosmic-Dust Grains: Cross Section Alignment

A. Lazarian, J. Ozik, M. Efroimsky, 1996 .

Identity in Agent-Based Models : Issues and Applications

C. Macal, J. Ozik, D. Sallach, 2007 .

Modeling Strategic Contexts

Jonathan Ozik, Nicholson T. Collier, Michael North, 2011 .

Application of Distributed Agent-based Modeling to Investigate Opioid Use Outcomes in Justice Involved Populations

Jonathan Ozik, Nicholson T. Collier, John Schneider, 2021, 2021 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW).

Multi-Objective Model Exploration of Hepatitis C Elimination in an Agent-Based Model of People who Inject Drugs

Jonathan Ozik, Nicholson T. Collier, Eric Tatara, 2019, Online World Conference on Soft Computing in Industrial Applications.

Search as a Tool for Emergence

Charles M. Macal, Jonathan Ozik, Michael North, 2009 .

Simulating Water, Individuals, and Management using a coupled and distributed approach

Jonathan Ozik, Nicholson T. Collier, John T. Murphy, 2014, Proceedings of the Winter Simulation Conference 2014.

Sequentially calibrating a Bayesian microsimulation model to incorporate new information and assumptions

Jonathan Ozik, Nicholson T. Collier, Carolyn M. Rutter, 2022, BMC Medical Informatics and Decision Making.

The Role of Computer Simulations in Science and the Academy

Hazhir Rahmandad, Jonathan Ozik, Jerker Denrell, 2018, Academy of Management Proceedings.

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow

Nicholson T. Collier, Samuel H. Friedman, G. An, 2017, bioRxiv.

High performance model exploration of mutation patterns in an agent-based model of colorectal cancer

Jonathan Ozik, Nicholson T. Collier, Chase Cockrell, 2016 .

Reopening California: Seeking robust, non-dominated COVID-19 exit strategies

Nicholson T. Collier, Jeanne S. Ringel, C. Rutter, 2021, PloS one.

A Community Roadmap for Scientific Workflows Research and Development

Rosa M. Badia, J. L. Peterson, Rafael Ferreira da Silva, 2021, 2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS).

Complex adaptive systems modeling with Repast Simphony

Michael J. North, Charles M. Macal, Jonathan Ozik, 2013, Complex Adapt. Syst. Model..

Re-treatment with direct-acting antivirals policy is needed to eliminate Hepatitis C among persons who inject drugs

Nicholson T. Collier, H. Dahari, E. Tatara, 2021 .

Modeling hepatitis C micro-elimination among people who inject drugs with direct-acting antivirals in metropolitan Chicago

Nicholson T. Collier, H. Dahari, E. Tatara, 2019, bioRxiv.

People who inject drugs in metropolitan Chicago: A meta-analysis of data from 1997-2017 to inform interventions and computational modeling toward hepatitis C microelimination

H. Dahari, J. Ozik, A. Khanna, 2022, PloS one.

Modeling indicates efficient vaccine-based interventions for the elimination of hepatitis C virus among persons who inject drugs in metropolitan Chicago.

H. Dahari, J. Layden, J. Ozik, 2019, Vaccine.

From desktop to Large-Scale Model Exploration with Swift/T

Carmine Spagnuolo, Justin M. Wozniak, Jonathan Ozik, 2016, 2016 Winter Simulation Conference (WSC).

Projecting the number of new HIV infections to formulate the "Getting to Zero" strategy in Illinois, USA.

Nicholson T. Collier, K. Fujimoto, N. Harawa, 2021, Mathematical biosciences and engineering : MBE.

A modeling framework to inform PrEP initiation and retention scale-up in the context of Getting to Zero Initiatives.

Nicholson T. Collier, W. Cunningham, K. Fujimoto, 2019, AIDS.

A portfolio approach to massively parallel Bayesian optimization

Jonathan Ozik, Nicholson T. Collier, Nicholson Collier, 2021, 2110.09334.

The last Black man with HIV in San Francisco: the potential role of gentrification on HIV getting to zero achievements.

J. Ozik, G. Millett, J. Schneider, 2020, The lancet. HIV.

A modeling framework to inform preexposure prophylaxis initiation and retention scale-up in the context of 'Getting to Zero' initiatives.

Jonathan Ozik, Nicholson T. Collier, Kayo Fujimoto, 2019, AIDS.

Expanding Medicaid to Reduce Human Immunodeficiency Virus Transmission in Houston, Texas

Nicholson T. Collier, Camden J. Hallmark, K. Fujimoto, 2022, Medical care.

National variability in Americans’ COVID-19 protective behaviors: Implications for vaccine roll-out

Bruce G. Taylor, Qinyun Lin, H. Pollack, 2021, PloS one.

Reopening California: Seeking Robust, Non-Dominated COVID-19 Exit Strategies

Nicholson T. Collier, Jeanne S. Ringel, C. Rutter, 2021, medRxiv.

Building and experimenting with an agent-based model to study the population-level impact of CommunityRx, a clinic-based community resource referral intervention

Nicholson T. Collier, Jennifer A. Makelarski, Elizabeth L. Tung, 2021, PLoS Comput. Biol..

Modeling the X-Ray-Ultraviolet Correlations in NGC 7469

A. Berkley, J. Ozik, D. Kazanas, 2000, astro-ph/0001239.

Iterative community-driven development of a SARS-CoV-2 tissue simulator

Yafei Wang, Bing Liu, James A. Glazier, 2020, bioRxiv.

Large-Scale Agent-Based Modeling with Repast HPC: A Case Study in Parallelizing an Agent-Based Model

Charles M. Macal, Jonathan Ozik, Nicholson T. Collier, 2015, Euro-Par Workshops.

Load Balancing Schemes for Large Synthetic Population-Based Complex Simulators

Charles M. Macal, Chaitanya Kaligotla, Jonathan Ozik, 2021, 2021 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW).

CHISIM: AN AGENT-BASED SIMULATION MODEL OF SOCIAL INTERACTIONS IN A LARGE URBAN AREA

Charles M. Macal, Jonathan Ozik, Nicholson T. Collier, 2018, 2018 Winter Simulation Conference (WSC).

MODELING AN INFORMATION-BASED COMMUNITY HEALTH INTERVENTION ON THE SOUTH SIDE OF CHICAGO

Charles M. Macal, Chaitanya Kaligotla, Jonathan Ozik, 2018, 2018 Winter Simulation Conference (WSC).

Endogenous Social Networks from Large-Scale Agent-Based Models

Charles M. Macal, Jonathan Ozik, Nicholson T. Collier, 2017, 2017 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW).

Many Resident Task Computing in Support of Dynamic Ensemble Computations

Justin M. Wozniak, Jonathan Ozik, Nicholson T. Collier, 2015 .

Test-driven agent-based simulation development

Jonathan Ozik, Nicholson T. Collier, N. Collier, 2013, 2013 Winter Simulations Conference (WSC).

Nested active learning for efficient model contextualization and parameterization: pathway to generating simulated populations using multi-scale computational models

Jonathan Ozik, Gary An, Chase Cockrell, 2019, bioRxiv.

A population data-driven workflow for COVID-19 modeling and learning

Jonathan Ozik, Nicholson T. Collier, Mickaël Binois, 2021, Int. J. High Perform. Comput. Appl..

A portfolio approach to massively parallel Bayesian optimization

Nicholson T. Collier, J. Ozik, M. Binois, 2021, 2110.09334.

Trajectory-oriented optimization of stochastic epidemiological models

Nicholson T. Collier, J. Ozik, M. Binois, 2023, 2305.03926.

Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis

Nicholson T. Collier, Yadu N. Babuji, K. Chard, 2023, arXiv.org.

MICROSIMULATION MODEL CALIBRATION USING INCREMENTAL MIXTURE APPROXIMATE BAYESIAN COMPUTATION.

Jonathan Ozik, Nicholson T. Collier, Carolyn Rutter, 2018, The annals of applied statistics.

Learning-accelerated discovery of immune-tumour interactions† †Electronic supplementary information (ESI) available: Simulation animations: https://www.youtube.com/watch?v=6GPXZvlNJBg, Software repository: https://github.com/MathCancer/PhysiCell-EMEWS-2/releases/tag/1.0.0http://physicell.mathcancer.

Jonathan Ozik, Nicholson T. Collier, Randy Heiland, 2019, Molecular systems design & engineering.

Learning-accelerated discovery of immune-tumour interactions

Jonathan Ozik, Nicholson T. Collier, Randy Heiland, 2019, bioRxiv.

Multiphasic hepatitis B virus kinetic patterns in humanized chimeric mice can be explained via stochastic agent-based modeling of intracellular virion production cycles

Nicholson T. Collier, D. Barash, M. Imamura, 2022, bioRxiv.

Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis

Nicholson T. Collier, Yadu N. Babuji, K. Chard, 2023, ArXiv.

Impact of a Low-Intensity Resource Referral Intervention on Patients’ Knowledge, Beliefs, and Use of Community Resources: Results from the CommunityRx Trial

Jennifer A. Makelarski, Elizabeth L. Tung, D. Beiser, 2019, Journal of General Internal Medicine.

CAFCW 113 Digital Twins for Predictive Cancer Care: an HPC-Enabled Community Initiative

Carolyn B. Lauzon, I. Shmulevich, T. Syeda-Mahmood, 2019 .

Projected long-term effects of colorectal cancer screening disruptions following the COVID-19 pandemic

Nicholson T. Collier, A. Zauber, C. Rutter, 2023, eLife.

Too Good to Be True? Evaluation of Colonoscopy Sensitivity Assumptions Used in Policy Models.

C. Rutter, J. Ozik, Jeffrey-K Lee, 2021, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

An Evolutionary Algorithm to Personalize Stool-Based Colorectal Cancer Screening

Nicholson T. Collier, I. Lansdorp-Vogelaar, R. Meester, 2022, Frontiers in Physiology.

The transformation of southern California's residential photovoltaics market through third-party ownership

Donna Heimiller, Charles M. Macal, Diane J. Graziano, 2012 .

Repast Simphony Statecharts

Michael J. North, Charles M. Macal, Jonathan Ozik, 2015, J. Artif. Soc. Soc. Simul..

Robustness Analysis of Colorectal Cancer Colonoscopy Screening Strategies

Nicholson T. Collier, C. Rutter, J. Ozik, 2023, medRxiv.

CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research

Fangfang Xia, Prasanna Balaprakash, Justin M. Wozniak, 2018, BMC Bioinformatics.

Scaling Deep Learning for Cancer with Advanced Workflow Storage Integration

Rick Stevens, Justin M. Wozniak, Manish Parashar, 2018, 2018 IEEE/ACM Machine Learning in HPC Environments (MLHPC).

Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development pdf

Bartosz Balis, Henri Casanova, Douglas Thain, 2021, ArXiv.

Simulating regional hydrology and water management: An integrated agent-based approach

Jonathan Ozik, Nicholson T. Collier, John T. Murphy, 2015, 2015 Winter Simulation Conference (WSC).

A meta-analysis of 20 years of data on people who inject drugs in metropolitan Chicago to inform computational modeling

H. Dahari, J. Ozik, B. Boodram, 2021, medRxiv.

Hybrid Simulation Development – Is It Just Analytics?

David Bell, Jonathan Ozik, Derek Groen, 2019, 2019 Winter Simulation Conference (WSC).

High-bypass Learning: Automated Detection of Tumor Cells That Significantly Impact Drug Response

Nicholson T. Collier, Rick L. Stevens, J. Mohd-Yusof, 2020, 2020 IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments (MLHPC) and Workshop on Artificial Intelligence and Machine Learning for Scientific Applications (AI4S).

Modeling hepatitis C micro-elimination among people who inject drugs with direct-acting antivirals in metropolitan Chicago

Nicholson T. Collier, H. Dahari, E. Tatara, 2019, bioRxiv.

Workflows Community Summit: Bringing the Scientific Workflows Community Together pdf

Lavanya Ramakrishnan, Marta Mattoso, Henri Casanova, 2021, 2103.09181.

Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics

Nicholson T. Collier, D. Barash, M. Imamura, 2023, PLoS Comput. Biol..

Adaptive Simulation with Repast Simphony and Swift

Charles M. Macal, Michael Wilde, Jonathan Ozik, 2014, Euro-Par Workshops.

2 Microsimulation Model for the Natural History of Colorectal Cancer

Nicholson T. Collier, C. Rutter, J. Ozik, 2018 .

High performance calibration of a colorectal cancer natural history model with Incremental Mixture Importance Sampling

Nicholson T. Collier, C. Rutter, J. Ozik, 2016 .