C. Bakalarski

发表

ATM and ATR Substrate Analysis Reveals Extensive Protein Networks Responsive to DNA Damage

B. A. Ballif, S. Elledge, S. Gygi, 2007, Science.

A quantitative atlas of mitotic phosphorylation

S. Elledge, S. Gygi, Noah Dephoure, 2008, Proceedings of the National Academy of Sciences.

Global Survey of Phosphotyrosine Signaling Identifies Oncogenic Kinases in Lung Cancer

Laura A. Sullivan, S. Gygi, J. Kornhauser, 2007, Cell.

Optimization and Use of Peptide Mass Measurement Accuracy in Shotgun Proteomics*S

Brendan K Faherty, Joshua E. Elias, S. Gygi, 2006, Molecular & Cellular Proteomics.

Mass Spectrometric Characterization of Recombinant Proteins

W. Sandoval, C. Bakalarski, J. Lill, 2017 .

A Proteomic Strategy for Gaining Insights into Protein Sumoylation in Yeast*S

Steven P. Gygi, Scott A. Gerber, S. Gygi, 2005, Molecular & Cellular Proteomics.

The effects of mass accuracy, data acquisition speed, and search algorithm choice on peptide identification rates in phosphoproteomics

Steven P Gygi, Wilhelm Haas, Corey E Bakalarski, 2007, Analytical and bioanalytical chemistry.

Improved Quantitative Mass Spectrometry Methods for Characterizing Complex Ubiquitin Signals

R. Kelley, V. Dixit, D. Arnott, 2010, Molecular & Cellular Proteomics.

The Immunoglobulin Superfamily Receptome Defines Cancer-Relevant Networks Associated with Clinical Outcome

Athena W Wong, Steve Lianoglou, S. Turley, 2020, Cell.

Discovery of a caspase cleavage motif antibody reveals insights into noncanonical inflammasome function

J. Payandeh, Yingnan Zhang, J. T. Koerber, 2021, Proceedings of the National Academy of Sciences.

Complement C1q-dependent excitatory and inhibitory synapse elimination by astrocytes and microglia in Alzheimer’s disease mouse models

Shristi Pandey, Tiffany Wu, T. Singh, 2022, Nature Aging.

Changes in the Synaptic Proteome in Tauopathy and Rescue of Tau-Induced Synapse Loss by C1q Antibodies

Melanie A. Huntley, Ben Chih, Tiffany Wu, 2018, Neuron.

Loss of the Tumor Suppressor BAP1 Causes Myeloid Transformation

Somasekar Seshagiri, Paula Katavolos, Omar Abdel-Wahab, 2012, Science.

Recurrent Loss of NFE2L2 Exon 2 Is a Mechanism for Nrf2 Pathway Activation in Human Cancers.

Leonard D. Goldstein, R. Gentleman, F. Gnad, 2016, Cell reports.

Phosphoproteomic characterization of DNA damage response in melanoma cells following MEK/PI3K dual inhibition

Amy Young, M. Belvin, K. Hoeflich, 2013, Proceedings of the National Academy of Sciences.

Endosomes are specialized platforms for bacterial sensing and NOD2 signalling

Zhaoshi Jiang, I. Mellman, J. Klumperman, 2014, Nature.

A Biologist's Field Guide to Multiplexed Quantitative Proteomics

Donald S Kirkpatrick, Corey E Bakalarski, D. Kirkpatrick, 2016, Molecular & Cellular Proteomics.

Characterizing Ubiquitination Sites by Peptide-based Immunoaffinity Enrichment*

Junmin Peng, Junmin Peng, D. Kirkpatrick, 2012, Molecular & Cellular Proteomics.

TEAD Proteins Associate With DNA Repair Proteins to Facilitate Cellular Recovery From DNA Damage

R. Rowntree, Matthew T. Chang, E. Verschueren, 2023, Molecular & cellular proteomics : MCP.

Ubiquitination profiling identifies sensitivity factors for IAP antagonist treatment.

Alexandre Masselot, Donald S Kirkpatrick, Corey E Bakalarski, 2015, The Biochemical journal.

The mitochondrial deubiquitinase USP30 opposes parkin-mediated mitophagy

D. Kirkpatrick, C. Bakalarski, M. Reichelt, 2014, Nature.

Enhanced analysis of metastatic prostate cancer using stable isotopes and high mass accuracy instrumentation.

Steven P Gygi, Brendan K Faherty, Scott A Gerber, 2006, Journal of proteome research.

Complementary proteomic tools for the dissection of apoptotic proteolysis events.

W. Forrest, S. Jhunjhunwala, D. Kirkpatrick, 2012, Journal of proteome research.

The Staphylococcus aureus ABC-Type Manganese Transporter MntABC Is Critical for Reinitiation of Bacterial Replication Following Exposure to Phagocytic Oxidative Burst

Min Xu, S. Lehar, Summer Park, 2015, PloS one.

Rapid, semi-automated protein terminal characterization using ISDetect

W. Sandoval, I. Wertz, C. Bakalarski, 2016, Nature Biotechnology.

Proteomic profiling of ClpXP substrates after DNA damage reveals extensive instability within SOS regulon.

S. Gygi, T. Baker, R. Sauer, 2006, Molecular cell.

The impact of peptide abundance and dynamic range on stable-isotope-based quantitative proteomic analyses.

Steven P Gygi, Scott A Gerber, Judit Villén, 2008, Journal of proteome research.

Identifying potential therapeutic targets of methicillin-resistant Staphylococcus aureus through in vivo proteomic analysis.

Shailesh V. Date, G. Nakamura, D. Arnott, 2014, The Journal of infectious diseases.

Catch-and-release reagents for broadscale quantitative proteomics analyses.

Joshua E. Elias, S. Gygi, C. Gartner, 2007, Journal of proteome research.

Phosphoproteomic characterization of DNA damage response in melanoma cells following MEK/PI3K dual inhibition

M. Belvin, K. Hoeflich, L. Friedman, 2013, Proceedings of the National Academy of Sciences.

Characterizing Ubiquitination Sites by Peptide-based Immunoaffinity Enrichment*

Junmin Peng, D. Kirkpatrick, C. Bakalarski, 2012, Molecular & Cellular Proteomics.

UniDec Processing Pipeline for Rapid Analysis of Biotherapeutic Mass Spectrometry Data.

W. Sandoval, W. Phung, C. Bakalarski, 2023, Analytical chemistry.

The UniDec Processing Pipeline for Rapid Analysis of Biotherapeutic Mass Spectrometry Data

W. Phung, C. Bakalarski, M. Marty, 2023 .