Claudia Andreini

发表

Metal-MACiE: a database of metals involved in biological catalysis

Janet M. Thornton, Gemma L. Holliday, Gabriele Cavallaro, 2009, Bioinform..

Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence

Paolo Frasconi, Andrea Passerini, Antonio Rosato, 2006, RECOMB.

A hint to search for metalloproteins in gene banks

Antonio Rosato, Ivano Bertini, Claudia Andreini, 2004, Bioinform..

Metalloproteomes: a bioinformatic approach.

Antonio Rosato, Ivano Bertini, Claudia Andreini, 2009, Accounts of chemical research.

MetalPDB in 2018: a database of metal sites in biological macromolecular structures

Antonio Rosato, Claudia Andreini, Lucia Banci, 2017, Nucleic Acids Res..

MACiE: exploring the diversity of biochemical reactions

Gemma L. Holliday, William R. Pearson, Syed Asad Rahman, 2011, Nucleic Acids Res..

FindGeo: a tool for determining metal coordination geometry

Gabriele Cavallaro, Claudia Andreini, Serena Lorenzini, 2012, Bioinform..

MetalS2: A Tool for the Structural Alignment of Minimal Functional Sites in Metal-Binding Proteins and Nucleic Acids

Gabriele Cavallaro, Yana Valasatava, Antonio Rosato, 2013, J. Chem. Inf. Model..

Upgrading and Validation of the AMBER Force Field for Histidine and Cysteine Zinc(II)-Binding Residues in Sites with Four Protein Ligands

Piero Procacci, Antonio Rosato, Marco Pagliai, 2019, J. Chem. Inf. Model..

MetalPDB: a database of metal sites in biological macromolecular structures

Gabriele Cavallaro, Antonio Rosato, Claudia Andreini, 2012, Nucleic Acids Res..

MetalPredator: a web server to predict iron-sulfur cluster binding proteomes

Yana Valasatava, Antonio Rosato, Claudia Andreini, 2016, Bioinform..

A Simple Protocol for the Comparative Analysis of the Structure and Occurrence of Biochemical Pathways Across Superkingdoms

Gabriele Cavallaro, Antonio Rosato, Ivano Bertini, 2011, J. Chem. Inf. Model..

Systematic classification of metalloproteins based on three-dimensional structural similarity of their metal sites

Antonio Rosato, Claudia Andreini, Yana Valasatava, 2015 .

Merit Award Winners

Paolo Frasconi, Andrea Passerini, Antonio Rosato, 2004, BMC Bioinformatics.

Predicting metals sensed by ArsR‐SmtB repressors: allosteric interference by a non‐effector metal

Claudia Andreini, Yasutaro Fujita, Stephen Tottey, 2006, Molecular microbiology.

Metal ions in biological catalysis: from enzyme databases to general principles

Janet M. Thornton, Gemma L. Holliday, Ivano Bertini, 2008, JBIC Journal of Biological Inorganic Chemistry.

MetalS3, a database-mining tool for the identification of structurally similar metal sites

Yana Valasatava, Antonio Rosato, Claudia Andreini, 2014, JBIC Journal of Biological Inorganic Chemistry.

Minimal Functional Sites in Metalloproteins and Their Usage in Structural Bioinformatics

Yana Valasatava, Antonio Rosato, Claudia Andreini, 2016, International journal of molecular sciences.

Counting the zinc-proteins encoded in the human genome.

Antonio Rosato, Ivano Bertini, Claudia Andreini, 2006, Journal of proteome research.

Occurrence of copper proteins through the three domains of life: a bioinformatic approach.

Antonio Rosato, Ivano Bertini, Claudia Andreini, 2008, Journal of proteome research.

Structural analysis of metal sites in proteins: non-heme iron sites as a case study.

Janet M Thornton, Ivano Bertini, Claudia Andreini, 2009, Journal of molecular biology.

Bioinformatic comparison of structures and homology-models of matrix metalloproteinases.

Antonio Rosato, Ivano Bertini, Claudia Andreini, 2004, Journal of proteome research.

Hidden relationships between metalloproteins unveiled by structural comparison of their metal sites

Yana Valasatava, Antonio Rosato, Claudia Andreini, 2015, Scientific Reports.

Zinc through the three domains of life.

Antonio Rosato, Ivano Bertini, Claudia Andreini, 2006, Journal of proteome research.

Minimal Functional Sites Allow a Classification of Zinc Sites in Proteins

Ivano Bertini, Claudia Andreini, I. Bertini, 2011, PloS one.