Ipek Oguz

发表

Globally Optimal Label Fusion with Shape Priors

Milan Sonka, Paul A. Yushkevich, Hongzhi Wang, 2016, MICCAI.

Optimal retinal cyst segmentation from OCT images

Milan Sonka, Ipek Oguz, Michael D. Abràmoff, 2016, SPIE Medical Imaging.

Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation

Peter A. Calabresi, Snehashis Roy, Aaron Carass, 2017, BrainLes@MICCAI.

Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics

Ipek Oguz, François Budin, Marion Hoogstoel, 2013, Front. Neuroinform..

Automated Segmentation of Knee MRI Using Hierarchical Classifiers and Just Enough Interaction Based Learning: Data from Osteoarthritis Initiative

Milan Sonka, Ipek Oguz, Satyananda Kashyap, 2016, MICCAI.

Minimum description length with local geometry

Martin Styner, Guido Gerig, Ipek Oguz, 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Efficient, graph-based white matter connectivity from orientation distribution functions via multi-directional graph propagation

Martin Styner, Ipek Oguz, Yundi Shi, 2011, Medical Imaging.

Framework for the Statistical Shape Analysis of Brain Structures using SPHARM-PDM.

Martin Styner, Guido Gerig, Ipek Oguz, 2006, The insight journal.

Using tensor-based morphometry to detect structural brain abnormalities in rats with adolescent intermittent alcohol exposure

Martin Styner, Ipek Oguz, Beatriz Paniagua, 2011, Medical Imaging.

Groupwise shape correspondence with local features

Ipek Oguz, I. Oguz, 2009 .

User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP

Guido Gerig, Yang Gao, Paul A. Yushkevich, 2018, Neuroinformatics.

Gradient Boosted Trees for Corrective Learning

Paul A. Yushkevich, Russell T. Shinohara, Ipek Oguz, 2017, MLMI@MICCAI.

Multiple Sclerosis Lesion Segmentation Using Joint Label Fusion

Peter A. Calabresi, Paul A. Yushkevich, Russell T. Shinohara, 2017, Patch-MI@MICCAI.

Machine learning in a graph framework for subcortical segmentation

Milan Sonka, Ipek Oguz, Satyananda Kashyap, 2017, Medical Imaging.

Statistical shape analysis of automatically segmented femur bones: Data from the osteoarthritis initiative

Milan Sonka, Ipek Oguz, Satyananda Kashyap, 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

Finite volume flow simulations on arbitrary domains

William V. Baxter, Ming C. Lin, Ipek Oguz, 2007, Graph. Model..

LOGISMOS-B: Layered Optimal Graph Image Segmentation of Multiple Objects and Surfaces for the Brain

Milan Sonka, Ipek Oguz, M. Sonka, 2014, IEEE Transactions on Medical Imaging.

Diffusion imaging quality control via entropy of principal direction distribution

Martin Styner, Guido Gerig, Ipek Oguz, 2013, NeuroImage.

Statistical group differences in anatomical shape analysis using Hotelling T2 metric

Shun Xu, Martin Styner, Guido Gerig, 2007, SPIE Medical Imaging.

Efficient Optimization for Hierarchically-Structured Interacting Segments (HINTS)

Milan Sonka, Ipek Oguz, Olga Veksler, 2017, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

Handheld spectrally encoded coherence tomography and reflectometry for motion-corrected ophthalmic optical coherence tomography and optical coherence tomography angiography

Ipek Oguz, Mohamed T. El-Haddad, Yuankai K. Tao, 2019, Neurophotonics.

A midas plugin to enable construction of reproducible web-based image processing pipelines

Martin Styner, Ipek Oguz, François Budin, 2013, Front. Neuroinform..

Corpus Callosum Subdivision Based on a Probabilistic Model of Inter-hemispheric Connectivity

Martin Styner, Ipek Oguz, Rachel Gimpel Smith, 2005, MICCAI.

DTI quality control assessment via error estimation from Monte Carlo simulations

Guido Gerig, Yin Li, Ipek Oguz, 2013, Medical Imaging.

Graph-based fluid segmentation from OCT images

Milan Sonka, Ipek Oguz, Li Zhang, 2016 .

RATS: Rapid Automatic Tissue Segmentation in rodent brain MRI

Milan Sonka, Ipek Oguz, Honghai Zhang, 2014, Journal of Neuroscience Methods.

Tensor-Based Grading: A Novel Patch-Based Grading Approach for the Analysis Of Deformation Fields in Huntington's Disease

Ipek Oguz, Pierrick Coup'e, Kilian Hett, 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis Lesion Segmentation

Peter A. Calabresi, Snehashis Roy, Paul A. Yushkevich, 2017, BrainLes@MICCAI.

Enhanced cortical thickness measurements for rodent brains via Lagrangian-based RK4 streamline computation

Martin Styner, Ipek Oguz, Joohwi Lee, 2016, SPIE Medical Imaging.

Tree-Oriented Analysis of Brain Artery Structure

Ipek Oguz, J. S. Marron, Ezra Miller, 2013, Journal of Mathematical Imaging and Vision.

DTIPrep: quality control of diffusion-weighted images

Martin Styner, Guido Gerig, Ipek Oguz, 2014, Front. Neuroinform..

Mandibular asymmetry characterization using generalized tensor-based morphometry

Martin Styner, Ipek Oguz, Beatriz Paniagua, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

4D Graph-Based Segmentation for Reproducible and Sensitive Choroid Quantification From Longitudinal OCT Scans

Milan Sonka, Ipek Oguz, Kyungmoo Lee, 2016, Investigative ophthalmology & visual science.

Medical Imaging with Deep Learning: MIDL 2019 -- Abstract Track

M. Jorge Cardoso, Ipek Oguz, Ender Konukoglu, 2019 .

Information Processing in Medical Imaging

Dinggang Shen, Martin Styner, Hongtu Zhu, 2017, Lecture Notes in Computer Science.

LOGISMOS-B for primates: primate cortical surface reconstruction and thickness measurement

Martin Styner, Milan Sonka, Ipek Oguz, 2015, Medical Imaging.

Automatic cortical thickness analysis on rodent brain

Martin Styner, Ipek Oguz, Beatriz Paniagua, 2011, Medical Imaging.

Particle-Guided Image Registration

Martin Styner, Ipek Oguz, Ilwoo Lyu, 2013, MICCAI.

Entropy-based particle correspondence for shape populations

Martin Styner, Ross T. Whitaker, P. Thomas Fletcher, 2016, International Journal of Computer Assisted Radiology and Surgery.

Combining Deep Learning and Multi-atlas Label Fusion for Automated Placenta Segmentation from 3DUS

Paul A. Yushkevich, James C. Gee, Ipek Oguz, 2018, DATRA/PIPPI@MICCAI.

Group-wise automatic mesh-based analysis of cortical thickness

Martin Styner, Ross T. Whitaker, Ipek Oguz, 2011, Medical Imaging.

Automatic skull-stripping of rat MRI/DTI scans and atlas building

Martin Styner, Ipek Oguz, Joohwi Lee, 2011, Medical Imaging.

Automated Segmentation of the Choroid in EDI-OCT Images with Retinal Pathology Using Convolution Neural Networks

Min Chen, James C. Gee, Ipek Oguz, 2017, FIFI/OMIA@MICCAI.

Ipek Oguz, Stephen M. Pizer, Xiaoxiao Liu, 2010, Medical Imaging.

Medical Imaging with Deep Learning: MIDL 2019 - Extended Abstract Track pdf

Ben Glocker, M. Jorge Cardoso, Ipek Oguz, 2019, ArXiv.

Multiple Sclerosis Lesion Segmentation with Tiramisu and 2.5D Stacked Slices

Rohit Bakshi, Ipek Oguz, Francesca Bagnato, 2019, MICCAI.

Cortical correspondence using entropy-based particle systems and local features

Martin Styner, Ross T. Whitaker, P. Thomas Fletcher, 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Robust Cortical Thickness Measurement with LOGISMOS-B

Milan Sonka, Ipek Oguz, 2014, MICCAI.

Cortical Correspondence with Probabilistic Fiber Connectivity

Martin Styner, Ross T. Whitaker, P. Thomas Fletcher, 2009, IPMI.

CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwnannoma and Cochlea Segmentation pdf

Sergio Escalera, Ben Glocker, Benoit M. Dawant, 2022, ArXiv.

Intraoperative spectrally encoded coherence tomography and reflectometry (iSECTR) for ophthalmic surgical guidance

Ipek Oguz, Yuankai K. Tao, Dewei Hu, 2021 .

Longitudinal subcortical segmentation with deep learning

Ipek Oguz, Jane S. Paulsen, Jeffrey D. Long, 2021, Medical Imaging.

Establishing surface correspondence for post-surgical cortical thickness changes in temporal lobe epilepsy

Ipek Oguz, Ilwoo Lyu, Bennett A. Landman, 2021, Medical Imaging.

LIFE: A Generalizable Autodidactic Pipeline for 3D OCT-A Vessel Segmentation

Ipek Oguz, Yuankai K. Tao, Dewei Hu, 2021, MICCAI.

Unsupervised Cross-Modality Domain Adaptation for Segmenting Vestibular Schwannoma and Cochlea with Data Augmentation and Model Ensemble pdf

Ipek Oguz, Dewei Hu, Hao Li, 2021, ArXiv.

MRI subcortical segmentation in neurodegeneration with cascaded 3D CNNs

Ipek Oguz, Jane S. Paulsen, Jeffrey D. Long, 2021, Medical Imaging.

Synthetic atrophy for longitudinal surface-based cortical thickness measurement

Ipek Oguz, Kathleen E. Larson, 2021, Medical Imaging.

The Shape Collapse Problem in Image Registration

Ipek Oguz, Gary E. Christensen, Oguz C. Durumeric, 2013 .

Automated placenta segmentation from 3 D ultrasound images

Paul A. Yushkevich, Ipek Oguz, Alison M. Pouch, 2016 .

A Minimum Cost Approach to Connectivity from Orientation Distribution Functions via Efficient Multi-directional Graph Propagation

Martin Styner, Ipek Oguz, Yundi Shi, 2012 .

Robust Multiple Sclerosis Lesion Inpainting with Edge Prior

Rohit Bakshi, Ipek Oguz, Francesca Bagnato, 2020, MLMI@MICCAI.

Computed tomography predictors of response to endobronchial valve lung reduction treatment. Comparison with Chartis.

Ipek Oguz, Youbing Yin, Claus Peter Heussel, 2015, American journal of respiratory and critical care medicine.

Comparison of Magnetic Resonance Imaging in Live vs. Post Mortem Rat Brains

Ipek Oguz, Marion Hoogstoel, Fulton T. Crews, 2013, PloS one.

The Translational Role of Diffusion Tensor Image Analysis in Animal Models of Developmental Pathologies

Martin Styner, Ipek Oguz, M. Styner, 2012, Developmental Neuroscience.

Use of High Resolution 3D Diffusion Tensor Imaging to Study Brain White Matter Development in Live Neonatal Rats

Ipek Oguz, Weili Lin, Martin A. Styner, 2011, Front. Psychiatry.

Postnatal day 7 ethanol treatment causes persistent reductions in adult mouse brain volume and cortical neurons with sex specific effects on neurogenesis.

Martin Styner, Ipek Oguz, Joohwi Lee, 2012, Alcohol.

KWMeshVisu: A Mesh Visualization Tool for Shape Analysis

Martin Styner, Guido Gerig, Ipek Oguz, 2006, The Insight Journal.

Synergy of Image Analysis for Animal and Human Neuroimaging Supports Translational Research on Drug Abuse

Guido Gerig, Ipek Oguz, Weili Lin, 2011, Front. Psychiatry.

Brain Abnormalities in Bipolar Disorder Detected by Quantitative T1ρ Mapping

Ipek Oguz, Gary E. Christensen, Vincent A. Magnotta, 2014, Molecular Psychiatry.

LOGISMOS: A Family of Graph-Based Optimal Image Segmentation Methods

Xiaodong Wu, Milan Sonka, Ipek Oguz, 2016 .