Songfeng Wu

发表

Protein probabilities in shotgun proteomics: Evaluating different estimation methods using a semi‐random sampling model

Fuchu He, Yunping Zhu, Songfeng Wu, 2006, Proteomics.

Tissue-Based Proteogenomics Reveals that Human Testis Endows Plentiful Missing Proteins.

Tao Zhang, F. He, Pengyuan Yang, 2015, Journal of proteome research.

Proteome Analysis of Hepatocellular Carcinoma by Two-dimensional Difference Gel Electrophoresis

Wei Sun, Fuchu He, Yunping Zhu, 2007, Molecular & Cellular Proteomics.

Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: Large‐scale organization and robustness

Jian Wang, Ping Wan, Fuchu He, 2006, Proteomics.

Proteome atlas of human chromosome 8 and its multiple 8p deficiencies in tumorigenesis of the stomach, colon, and liver.

Cheng Chang, Yun-ping Zhu, Yang Zhang, 2013, Journal of proteome research.

First proteomic exploration of protein-encoding genes on chromosome 1 in human liver, stomach, and colon.

Cheng Chang, Yun-ping Zhu, Tao Zhang, 2013, Journal of proteome research.

Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP.

Tao Zhang, Cheng Chang, Qing-Yu He, 2014, Journal of proteome research.

Regular Patterns for Proteome-Wide Distribution of Protein Abundance across Species

Yun-ping Zhu, Ying Jiang, F. He, 2012, PloS one.

Leveraging a Multi-Omics Strategy for Prioritizing Personalized Candidate Mutation-Driver Genes: A Proof-of-Concept Study

Yun-ping Zhu, K. Ding, W. Ying, 2015, Scientific Reports.

LFAQ: towards unbiased label-free absolute protein quantification by predicting peptide quantitative factors

Zhiqiang Gao, Cheng Chang, Yun-ping Zhu, 2018, bioRxiv.

Renewal and preliminary study of expressed sequence tags database on human fetal liver aged 22 wk of gestation

Yun-ping Zhu, F. He, Gangqiao Zhou, 2008 .

The Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and characterisation of the carbonate‐washed membrane standard

Florian S. Dreyer, Eugene A. Kapp, R. Sirdeshmukh, 2010, Proteomics.

iProX in 2021: connecting proteomics data sharing with big data

Yun-ping Zhu, Nong Xiao, H. Hermjakob, 2021, Nucleic Acids Res..

Analysis of human liver proteome using replicate shotgun strategy

Fuchu He, Ying Jiang, Yanping Song, 2007, Proteomics.

Mass measurement errors of Fourier-transform mass spectrometry (FTMS): distribution, recalibration, and application.

Yun-ping Zhu, F. He, Hongwei Xie, 2009, Journal of proteome research.

Human fallopian tube proteome shows high coverage of mesenchymal stem cells associated proteins

Cheng Chang, Yang Zhang, F. Zhong, 2016, Bioscience reports.

Longitudinal Serum Proteome Characterization of COVID-19 Patients With Different Severities Revealed Potential Therapeutic Strategies

P. Liao, Songfeng Wu, Wei Sun, 2022, Frontiers in Immunology.

PSL-LCCL: a resource for subcellular protein localization in liver cancer cell line SK_HEP1

K. Ding, Songfeng Wu, Xia Tang, 2022, Database J. Biol. Databases Curation.

Quantitative proteomic survey of endoplasmic reticulum in mouse liver.

Yun-ping Zhu, Ying Jiang, F. He, 2010, Journal of proteome research.

iProX: an integrated proteome resource

Kenli Li, Jie Ma, Zhong Jin, 2018, Nucleic Acids Res..

Linkage Disequilibrium and Haplotype Architecture for two ABC Transporter Genes (ABCC1 and ABCG2) in Chinese Population: Implications for Pharmacogenomic Association Studies

Yun-ping Zhu, F. He, Haijian Wang, 2004, Annals of human genetics.

Proteomic analysis on structural proteins of Severe Acute Respiratory Syndrome coronavirus

Ping Wan, Fuchu He, Yunping Zhu, 2004, Proteomics.

Computational identification of rare codons of Escherichia coli based on codon pairs preference

Jie Ma, Dong Li, Jiyang Zhang, 2010, BMC Bioinformatics.

Relationships between Hematopoiesis and Hepatogenesis in the Midtrimester Fetal Liver Characterized by Dynamic Transcriptomic and Proteomic Profiles

W. Liu, Chao Geng, Ying Jiang, 2009, PloS one.

LFAQ: Toward Unbiased Label-Free Absolute Protein Quantification by Predicting Peptide Quantitative Factors.

Zhiqiang Gao, Cheng Chang, Yun-ping Zhu, 2018, Analytical chemistry.

Profiling of Phosphorylated Proteins in Human Fetal Liver

Yun-ping Zhu, Ying Jiang, F. He, 2008 .

Multi‐modality of pI distribution in whole proteome

Ping Wan, Fuchu He, Yunping Zhu, 2006, Proteomics.

Comparison of alternative analytical techniques for the characterisation of the human serum proteome in HUPO Plasma Proteome Project

Fuchu He, Zhuang Lu, Songfeng Wu, 2005, Proteomics.

A Dataset of Human Fetal Liver Proteome Identified by Subcellular Fractionation and Multiple Protein Separation and Identification Technology*S

Ping Wan, Fuchu He, Yunping Zhu, 2006, Molecular & Cellular Proteomics.

Characterization of Ceap-11 and Ceap-16, two novel splicing-variant-proteins, associated with centrosome, microtubule aggregation and cell proliferation.

Yun-ping Zhu, Xiaohang Zhao, F. He, 2004, Journal of molecular biology.

CAPER: a chromosome-assembled human proteome browsER.

Dan Wang, Jie Ma, Haiyan Sun, 2013, Journal of proteome research.

ProPAS: standalone software to analyze protein properties

Yunping Zhu, Songfeng Wu, Yun-ping Zhu, 2012, Bioinformation.

A new insight into the impact of different proteases on SILAC quantitative proteome of the mouse liver

Cheng Chang, Yun-ping Zhu, Ying Jiang, 2013, Proteomics.

Functional proteomic analysis of nonalcoholic fatty liver disease in rat models: Enoyl–coenzyme a hydratase down‐regulation exacerbates hepatic steatosis

Yun-ping Zhu, Ying Jiang, F. He, 2010, Hepatology.

LiverAtlas: a unique integrated knowledge database for systems‐level research of liver and hepatic disease

Fuchu He, Yunping Zhu, Mansheng Li, 2013, Liver international : official journal of the International Association for the Study of the Liver.

SILVER: an efficient tool for stable isotope labeling LC-MS data quantitative analysis with quality control methods

Wei Zhang, Jie Ma, Cheng Chang, 2013, Bioinform..

Bayesian Nonparametric Model for the Validation of Peptide Identification in Shotgun Proteomics*S

Jie Ma, Jiyang Zhang, Yunping Zhu, 2009, Molecular & Cellular Proteomics.

Molecular evolution in different subtypes of multifocal hepatocellular carcinoma.

K. Ding, Haijian Wang, Songfeng Wu, 2023, Hepatology international.

Gene expression profiling in human fetal liver and identification of tissue- and developmental-stage-specific genes through compiled expression profiles and efficient cloning of full-length cDNAs.

C. Dong, X. Qu, Gangqiao Zhou, 2001, Genome research.

Systematic analysis of missing proteins provides clues to help define all of the protein-coding genes on human chromosome 1.

Tao Zhang, Cheng Chang, Qing-Yu He, 2014, Journal of proteome research.

Special Enrichment Strategies Greatly Increase the Efficiency of Missing Proteins Identification from Regular Proteome Samples.

Yun-ping Zhu, F. He, Pengyuan Yang, 2015, Journal of proteome research.

Evolutionary Characteristics of Missing Proteins: Insights into the Evolution of Human Chromosomes Related to Missing-Protein-Encoding Genes.

F. He, Songfeng Wu, P. Xu, 2015, Journal of proteome research.

PepDistiller: A quality control tool to improve the sensitivity and accuracy of peptide identifications in shotgun proteomics

Liwei Li, Jie Ma, Cheng Chang, 2012, Proteomics.

An Integrated Strategy for Functional Analysis in Large-scale Proteomic Research by Gene Ontology

Fuchu He, Yunping Zhu, Songfeng Wu, 2005 .

Improving the sensitivity of MASCOT search results validation by combining new features with Bayesian nonparametric model

Jie Ma, Jiyang Zhang, Yunping Zhu, 2010, Proteomics.

Functional proteomic analysis of nonalcoholic fatty liver disease in rat models: Enoyl–coenzyme a hydratase down‐regulation exacerbates hepatic steatosis

Yun-ping Zhu, Ying Jiang, F. He, 2010, Hepatology.

Computational identification of rare codons of Escherichia coli based on codon pairs preference

Songfeng Wu, Yunping Zhu, Xianming Wu, 2010, BMC Bioinformatics.

Validation of a multi-omics strategy for prioritizing personalized candidate driver genes

K. Ding, L. Tian, N. Tang, 2016, Oncotarget.