Simin He

发表

A Nonlinear Scoring Framework for Peptide Identification via Tandem Mass Spectrometry

Yan Fu, C. Ling, R. Sun, 2004 .

PeakSelect: preprocessing tandem mass spectra for better peptide identification.

C. Ling, R. Zeng, Wen Gao, 2008, Rapid communications in mass spectrometry : RCM.

Isotope pattern vector based tandem mass spectral data calibration for improved peptide and protein identification.

Dong Xu, Guohui Lin, Wen Gao, 2009, Rapid communications in mass spectrometry : RCM.

COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

Cigdem Demir, Alexander Schliep, John Hawkins, 2005 .

pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry

Wen Gao, Rong Zeng, Qiang Yang, 2005, Bioinform..

FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space

Zhiyong Wang, Xiang Chen, Wen Gao, 2008, Bioinform..

Predicting molecular formulas of fragment ions with isotope patterns in tandem mass spectra

Wen Gao, Simin He, Runsheng Chen, 2005, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Switch Simulations Based on Workload Pattern Generation and Smoothed Periodic Input

Wen Gao, Qiang Zheng, Simin He, 2006, Proceedings of 15th International Conference on Computer Communications and Networks.

A block-based support vector machine approach to the protein homology prediction task in KDD Cup 2004

Wen Gao, Shiguang Shan, Qiang Yang, 2004, SKDD.

A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots

Xiang Chen, Wen Gao, Simin He, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

A Kernel-Based Case Retrieval Algorithm with Application to Bioinformatics

Wen Gao, Rong Zeng, Yiqiang Chen, 2004, PRICAI.