J. S. Patel

发表

Assessment of software methods for estimating protein-protein relative binding affinities

F. M. Ytreberg, Tawny R. Gonzalez, K. P. Martin, 2020, PloS one.

Fast Calculation of Protein–Protein Binding Free Energies Using Umbrella Sampling with a Coarse-Grained Model

F. M. Ytreberg, J. S. Patel, 2017, Journal of chemical theory and computation.

Predicting the viability of beta-lactamase: How folding and binding free energies correlate with beta-lactamase fitness

Brenda M. Rubenstein, Jagdish Suresh Patel, D. Weinreich, 2020, bioRxiv.

EfgA is a conserved formaldehyde sensor that halts bacterial translation in response to elevated formaldehyde

Jannell V. Bazurto, Y. Shamoo, C. Marx, 2020, bioRxiv.

Short-wavelength-sensitive 2 (Sws2) visual photopigment models combined with atomistic molecular simulations to predict spectral peaks of absorbance

Jonathan E. Barnes, J. S. Patel, Dharmeshkumar Patel, 2020, bioRxiv.

Short-wavelength-sensitive 2 (Sws2) visual photopigment models combined with atomistic molecular simulations to predict spectral peaks of absorbance

Jonathan E. Barnes, J. S. Patel, Dharmeshkumar Patel, 2020, PLoS computational biology.

Predicting the viability of beta-lactamase: How folding and binding free energies correlate with beta-lactamase fitness

D. Weinreich, C. Wylie, B. Rubenstein, 2020, PloS one.

Electrostatic Switching Controls Channel Dynamics of the Sensor Protein VirB10 in A. tumefaciens Type IV Secretion System

P. Agarwal, S. Haider, J. S. Patel, 2020, ACS omega.

Vision using multiple distinct rod opsins in deep-sea fishes

J. Marshall, Celeste J. Brown, K. Jakobsen, 2018, Science.

The Characterization of a Novel Virus Discovered in the Yeast Pichia membranifaciens

Paul A. Rowley, J. S. Patel, Mark D. Lee, 2022, Viruses.

Defining the HIV Capsid Binding Site of Nucleoporin 153

B. Rubenstein, F. M. Ytreberg, Paul A. Rowley, 2022, bioRxiv.

Assessment of software methods for estimating protein-protein relative binding affinities

F. M. Ytreberg, Tawny R. Gonzalez, K. P. Martin, 2020, bioRxiv.

Adaptive Mutations in RNA Polymerase and the Transcriptional Terminator Rho Have Similar Effects on Escherichia coli Gene Expression

Alejandra Rodríguez-Verdugo, B. Gaut, J. S. Patel, 2016, bioRxiv.

An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity

Jonathan E. Barnes, J. S. Patel, Mari H Eilertsen, 2022, Frontiers in Neuroanatomy.

The effect of mutations on binding interactions between the SARS-CoV-2 receptor binding domain and neutralizing antibodies B38 and CB6

F. M. Ytreberg, Jonathan E. Barnes, J. S. Patel, 2021, Biophysical Journal.

Stricker Learning Span criterion validity: a remote self-administered multi-device compatible digital word list memory measure shows similar ability to differentiate amyloid and tau PET-defined biomarker groups as in-person Auditory Verbal Learning Test

C. Jack, J. Graff‐Radford, W. Kremers, 2022, medRxiv.

Paired Simulations and Experimental Investigations into the Calcium-Dependent Conformation of Albumin

F. M. Ytreberg, M. Bernards, J. S. Patel, 2022, J. Chem. Inf. Model..

Targeting SUMOylation dependency in human cancer stem cells through a unique SAE2 motif revealed by chemical genomics.

M. Bhatia, J. S. Patel, Gerard D. Wright, 2021, Cell chemical biology.

Implementing and assessing an alchemical method for calculating protein-protein binding free energy

Jagdish Suresh Patel, F. Marty Ytreberg, Dharmeshkumar Patel, 2020, bioRxiv.

Expanding the watch list for potential Ebola virus antibody escape mutations

F. M. Ytreberg, J. S. Patel, Caleb J Quates, 2019, bioRxiv.

Predicting peak spectral sensitivities of vertebrate cone visual pigments using atomistic molecular simulations

Celeste J. Brown, Jagdish Suresh Patel, F. Marty Ytreberg, 2018, PLoS Comput. Biol..

Nuku, a family of primate retrocopies derived from KU70

James T. Van Leuven, Kyudong Han, S. Sawyer, 2021, G3.

Nuku, a family of primate retrogenes derived from KU70

Kyudong Han, S. Sawyer, Paul A. Rowley, 2020, bioRxiv.

Steered Molecular Dynamics Simulations for Studying Protein-Ligand Interaction in Cyclin-Dependent Kinase 5

Andrea Cavalli, Walter Rocchia, Jagdish Suresh Patel, 2014, J. Chem. Inf. Model..

Molecular Modeling Predicts Novel Antibody Escape Mutations in the Respiratory Syncytial Virus Fusion Glycoprotein

F. M. Ytreberg, J. S. Patel, Tanya A. Miura, 2022, bioRxiv.

The pesticide chlorpyrifos promotes obesity by inhibiting diet-induced thermogenesis in brown adipose tissue

Amogelang R. Raphenya, S. Kajimura, M. Wade, 2021, Nature Communications.

Molecular modeling on inhibitor complexes and active-site dynamics of cytochrome P450 C17, a target for prostate cancer therapy.

Stephen Neidle, S. Neidle, S. Haider, 2010, Journal of molecular biology.

Insights into Ligand–Protein Binding from Local Mechanical Response

Matteo Masetti, Walter Rocchia, Andrea Cavalli, 2011, Journal of chemical theory and computation.

EfgA is a conserved formaldehyde sensor that leads to bacterial growth arrest in response to elevated formaldehyde

Jannell V. Bazurto, Y. Shamoo, C. Marx, 2021, PLoS biology.

Molecular Modeling Predicts Novel Antibody Escape Mutations in the Respiratory Syncytial Virus Fusion Glycoprotein

F. M. Ytreberg, J. S. Patel, Tanya A. Miura, 2022, Journal of virology.