S. Dmitriev

发表

In vitro activity of human translation initiation factor eIF4B is not affected by phosphomimetic amino acid substitutions S422D and S422E.

I. Terenin, L. Shagam, D. Andreev, 2012, Biochimie.

Unidirectional constant rate motion of the ribosomal scanning particle during eukaryotic translation initiation

A. Spirin, I. Shatsky, O. Alekhina, 2011, Nucleic acids research.

Insights into the mechanisms of eukaryotic translation gained with ribosome profiling

Patrick B. F. O'Connor, P. Baranov, D. Andreev, 2016, Nucleic acids research.

Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression

Patrick B. F. O'Connor, D. Morris, E. Kenny, 2015, eLife.

Non-Canonical Translation Initiation Mechanisms Employed by Eukaryotic Viral mRNAs

V. Agol, I. Terenin, N. Kalinina, 2021, Biochemistry (Moscow).

Cap- and IRES-independent scanning mechanism of translation initiation as an alternative to the concept of cellular IRESs

I. Terenin, I. Shatsky, D. Andreev, 2010, Molecules and cells.

Differential contribution of the m7G-cap to the 5′ end-dependent translation initiation of mammalian mRNAs

V. Prassolov, W. Merrick, I. Terenin, 2009, Nucleic acids research.

A researcher’s guide to the galaxy of IRESs

I. Terenin, I. Shatsky, D. Andreev, 2016, Cellular and Molecular Life Sciences.

Early B-cell factor 1 (EBF1) is critical for transcriptional control of SLAMF1 gene in human B cells.

K. V. Korneev, Anna V Klepikova, I. Kulakovskiy, 2016, Biochimica et biophysica acta.

Efficient Translation Initiation Directed by the 900-Nucleotide-Long and GC-Rich 5′ Untranslated Region of the Human Retrotransposon LINE-1 mRNA Is Strictly Cap Dependent Rather than Internal Ribosome Entry Site Mediated

Ivan N. Shatsky, Ilya M. Terenin, Sergey E. Dmitriev, 2007, Molecular and Cellular Biology.

Eukaryotic translation initiation machinery can operate in a bacterial-like mode without eIF2

D. Andreev, I. Terenin, I. Shatsky, 2008, Nature Structural &Molecular Biology.

The 5′ untranslated region of Apaf‐1 mRNA directs translation under apoptosis conditions via a 5′ end‐dependent scanning mechanism

I. Terenin, I. Shatsky, D. Andreev, 2012, FEBS letters.

Sliding of a 43S ribosomal complex from the recognized AUG codon triggered by a delay in eIF2-bound GTP hydrolysis

D. Andreev, I. Terenin, I. Shatsky, 2015, Nucleic acids research.

Four translation initiation pathways employed by the leaderless mRNA in eukaryotes

Ivan N. Shatsky, Ilya M. Terenin, Sergey E. Dmitriev, 2016, Scientific Reports.

Functional Cyclization of Eukaryotic mRNAs

I. Terenin, O. Alekhina, K. Vassilenko, 2020, International journal of molecular sciences.

A novel uORF-based regulatory mechanism controls translation of the human MDM2 and eIF2D mRNAs during stress.

D. Andreev, I. Terenin, I. Shatsky, 2019, Biochimie.

Efficient cap-dependent translation of mammalian mRNAs with long and highly structured 5′-untranslated regions in vitro and in vivo

I. Terenin, I. Shatsky, D. Andreev, 2009, Molecular Biology.

Cap-independent translation initiation of Apaf-1 mRNA based on a scanning mechanism is determined by some features of the secondary structure of its 5′ untranslated region

I. Terenin, I. Shatsky, D. Andreev, 2013, Biochemistry (Moscow).

Enhanced epigenetic profiling of classical human monocytes reveals a specific signature of healthy aging in the DNA methylome

Maxim N. Artyomov, Laura L. Arthur, M. Daly, 2020, Nature Aging.

Sense transcripts originated from an internal part of the human retrotransposon LINE-1 5' UTR.

M. Suntsova, A. Buzdin, A. Zabolotneva, 2012, Gene.

Key role of the internal 5′-UTR segment in the transcription activity of the human L1 retrotransposon

V. Prassolov, I. Terenin, I. Olovnikov, 2007, Molecular Biology.

Epigenetic aging of classical monocytes from healthy individuals

Maxim N. Artyomov, Laura L. Arthur, M. Daly, 2020, bioRxiv.

Identiﬁcation of a Mg 2+ -sensitive ORF in the 5 (cid:2) -leader of TRPM7 magnesium channel mRNA

A. Ryazanov, S. Dmitriev, I. Nikonorova, 2014 .

Supplemental Information Crystal Structure of the Human Ribosome in Complex with DENR-MCT-1

T. Steitz, M. Garber, S. Dmitriev, 2022 .

Design of Targeted B Cell Killing Agents

A. Tonevitsky, O. Stremovskiy, S. Deyev, 2011, PloS one.

In vivo cyclic induction of the FOXM1 transcription factor delays natural and progeroid aging phenotypes and extends healthspan

V. Gladyshev, E. Logarinho, J. P. Castro, 2022, Nature Aging.

Translation control of mRNAs encoding mammalian translation initiation factors.

P. Baranov, G. Loughran, I. Terenin, 2018, Gene.

Single-domain antibody delivery using an mRNA platform protects against lethal doses of botulinum neurotoxin A

E. V. Usachev, V. Gushchin, A. Gintsburg, 2022, bioRxiv.

Robust expression of transgenes in Drosophila melanogaster

R. Andino, S. Dmitriev, Peter V. Lidsky, 2022, bioRxiv.

Synergistic suppression of t(8;21)-positive leukemia cell growth by combining oridonin and MAPK1/ERK2 inhibitors

O. Kovalchuk, A. Buzdin, V. Prassolov, 2017, Oncotarget.

Differential factor requirement to assemble translation initiation complexes at the alternative start codons of foot-and-mouth disease virus RNA.

I. Terenin, I. Shatsky, E. Martínez-Salas, 2007, RNA.

Encarna disease virus RNA complexes at the alternative start codons of foot-and-mouth Differential factor requirement to assemble translation initiation

I. Terenin, I. Shatsky, E. Martínez-Salas, 2022 .

Minor Secondary-Structure Variation in the 5"-Untranslated Region of the β-Globin mRNA Changes the Concentration Requirements for eIF2

I. Terenin, I. Shatsky, S. Dmitriev, 2003, Molecular Biology.

[A key role of the internal region of the 5'-untranslated region in the human L1 retrotransposon transcription activity].

V. Prasolov, I. Terenin, I. Olovnikov, 2007, Molekuliarnaia biologiia.

Mutual Effects of Translation Initiation Factors in Binding to the IRES of the Encephalomyocarditis Virus RNA

I. Shatsky, S. Dmitriev, A. Pisarev, 2004, Molecular Biology.

Enteroviruses Manipulate the Unfolded Protein Response through Multifaceted Deregulation of the Ire1-Xbp1 Pathway

S. Dmitriev, A. Gmyl, A. Slavokhotova, 2022, Viruses.

Amicoumacin A induces cancer cell death by targeting the eukaryotic ribosome

Sergey E. Dmitriev, Ilya A. Osterman, Petr V. Sergiev, 2016, Scientific Reports.

A Quick Guide to Small-Molecule Inhibitors of Eukaryotic Protein Synthesis

S. Dmitriev, D. O. Vladimirov, K. A. Lashkevich, 2020, Biochemistry (Moscow).

Patterns of Aging Biomarkers, Mortality, and Damaging Mutations Illuminate the Beginning of Aging and Causes of Early-Life Mortality.

V. Gladyshev, S. Dmitriev, D. Podolskiy, 2019, Cell reports.

Translatome and transcriptome analysis of TMA20 (MCT-1) and TMA64 (eIF2D) knockout yeast strains

D. Andreev, I. Kulakovskiy, I. Terenin, 2019, Data in brief.

Crystal structure of the DENR-MCT-1 complex revealed zinc-binding site essential for heterodimer formation

Sergey E. Dmitriev, Thomas A. Steitz, T. Steitz, 2018, Proceedings of the National Academy of Sciences.

Tma64/eIF2D, Tma20/MCT-1, and Tma22/DENR Recycle Post-termination 40S Subunits In Vivo.

A. Hinnebusch, N. Guydosh, I. Shatsky, 2018, Molecular cell.

Pros and cons of pDNA and mRNA transfection to study mRNA translation in mammalian cells.

D. Andreev, I. Terenin, I. Shatsky, 2016, Gene.

Multifaceted deregulation of gene expression and protein synthesis with age

V. Gladyshev, I. Kulakovskiy, S. Dmitriev, 2020, Proceedings of the National Academy of Sciences.

RNA-seq analysis of an apical meristem time series reveals a critical point in Arabidopsis thaliana flower initiation

M. Logacheva, A. Penin, S. Dmitriev, 2015, BMC Genomics.

Longevity and rejuvenation effects of cell reprogramming are decoupled from loss of somatic identity

V. Gladyshev, E. Khrameeva, S. Dmitriev, 2022, bioRxiv.

Reversibility of irreversible aging

V. Gladyshev, S. Dmitriev, Fedor Galkin, 2019, Ageing Research Reviews.

Translation elongation factor 2 depletion by siRNA in mouse liver leads to mTOR-independent translational upregulation of ribosomal protein genes

Daniel G. Anderson, S. Gygi, V. Gladyshev, 2020, Scientific Reports.

45S rDNA Repeats of Turtles and Crocodiles Harbor a Functional 5S rRNA Gene Specifically Expressed in Oocytes

S. Galkina, E. Gaginskaya, S. Dmitriev, 2021, Molecular biology and evolution.

Human-specific endogenous retroviral insert serves as an enhancer for the schizophrenia-linked gene PRODH

M. Suntsova, A. Garazha, A. Aliper, 2013, Proceedings of the National Academy of Sciences.

Systematic identification of yeast mutants with increased rates of cell death reveals rapid stochastic necrosis associated with cell division

V. Gladyshev, R. Schneider, S. Dmitriev, 2021, bioRxiv.

GTP-independent tRNA Delivery to the Ribosomal P-site by a Novel Eukaryotic Translation Factor*

W. Merrick, I. Terenin, I. Shatsky, 2010, The Journal of Biological Chemistry.

Human Tissues Exhibit Diverse Composition of Translation Machinery

I. Kulakovskiy, S. Dmitriev, A. Anisimova, 2023, bioRxiv.

Glycyl-tRNA synthetase specifically binds to the poliovirus IRES to activate translation initiation

I. Terenin, I. Shatsky, D. Andreev, 2012, Nucleic acids research.

Transcriptome-wide studies uncover the diversity of modes of mRNA recruitment to eukaryotic ribosomes

I. Terenin, I. Shatsky, D. Andreev, 2014, Critical reviews in biochemistry and molecular biology.

mRNA Targeting, Transport and Local Translation in Eukaryotic Cells: From the Classical View to a Diversity of New Concepts

S. Dmitriev, K. A. Lashkevich, 2021, Molecular Biology.

[mRNA Targeting, Transport and Local Translation in Eukaryotic Cells: From the Classical View to a Diversity of New Concepts].

S. Dmitriev, K. A. Lashkevich, 2021, Molekuliarnaia biologiia.

Does HIV-1 mRNA 5'-untranslated region bear an internal ribosome entry site?

I. Terenin, I. Shatsky, D. Andreev, 2016, Biochimie.

A novel mechanism of eukaryotic translation initiation that is neither m7G-cap-, nor IRES-dependent

I. Terenin, I. Shatsky, D. Andreev, 2012, Nucleic acids research.

Crystal Structure of the C-terminal Domain of Human eIF2D and Its Implications on Eukaryotic Translation Initiation.

N. N. Joseph, T. Steitz, S. Dmitriev, 2017, Journal of molecular biology.

I. Terenin, I. Shatsky, D. Andreev, 2006, Molecular Biology.

Tetracenomycin X inhibits translation by binding within the ribosomal exit tunnel

Daniel N. Wilson, A. Osterman, P. Sergiev, 2020, Nature Chemical Biology.

svist4get: a simple visualization tool for genomic tracks from sequencing experiments

Vadim N. Gladyshev, Ivan V. Kulakovskiy, Sergey E. Dmitriev, 2019, BMC Bioinformatics.

Relocalization of Translation Termination and Ribosome Recycling Factors to Stress Granules Coincides with Elevated Stop-Codon Readthrough and Reinitiation Rates upon Oxidative Stress

V. Prassolov, P. Ivanov, S. Dmitriev, 2023, Cells.

Ribo-Seq and RNA-Seq of TMA46 ( DFRP1) and GIR2 ( DFRP2) knockout yeast strains

I. Kulakovskiy, S. Dmitriev, D. S. Makeeva, 2021, F1000Research.

Crystal structure of the DENR-MCT-1 complex

S. Dmitriev, I. Lomakin, Sergey E. Dmitriev, 2019 .

CTELS: A Cell-Free System for the Analysis of Translation Termination Rate

V. Gladyshev, E. Alkalaeva, S. Dmitriev, 2020, Biomolecules.

Eukaryotic translation initiation machinery can operate in a prokaryotic-like mode without eIF2

Ivan N. Shatsky, Ilya M. Terenin, Sergey E. Dmitriev, 2008 .

Multi-omic rejuvenation and lifespan extension upon exposure to youthful circulation

S. Horvath, A. Lu, V. Gladyshev, 2021, bioRxiv.

Multifaceted deregulation of gene expression and protein synthesis with age

V. Gladyshev, I. Kulakovskiy, S. Dmitriev, 2020, Proceedings of the National Academy of Sciences.

Protein synthesis and quality control in aging

V. Gladyshev, S. Dmitriev, A. Anisimova, 2018, Aging.

The conventional mechanism of mRNA recruitment to ribosomes in eukaryotes and factors involved in this process

I. Terenin, I. Shatsky, D. Andreev, 2014 .

Silencing AML1-ETO gene expression leads to simultaneous activation of both pro-apoptotic and proliferation signaling

A M Aliper, A. Garazha, A. Aliper, 2014, Leukemia.

Conversion of 48S translation preinitiation complexes into 80S initiation complexes as revealed by toeprinting

I. Shatsky, S. Dmitriev, M. Rubtsova, 2003, FEBS letters.

Identification of a Mg2+-sensitive ORF in the 5′-leader of TRPM7 magnesium channel mRNA

A. Ryazanov, K. Vassilenko, S. Dmitriev, 2014, Nucleic acids research.

Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates.

V. Makeev, V. Gladyshev, I. Kulakovskiy, 2021, Methods in molecular biology.

RNA-seq analysis of an apical meristem time series reveals a critical point in Arabidopsis thaliana flower initiation

Sergey E. Dmitriev, Maria D. Logacheva, Anna V. Klepikova, 2015, BMC Genomics.

A standard knockout procedure alters expression of adjacent loci at the translational level

V. Gladyshev, I. Kulakovskiy, S. Dmitriev, 2021, bioRxiv.

Distinct longevity mechanisms across and within species and their association with aging

N. Schork, V. Gladyshev, A. Seluanov, 2023, Cell.

Archaeal translation initiation factor aIF2 can substitute for eukaryotic eIF2 in ribosomal scanning during mammalian 48S complex formation.

M. Garber, I. Terenin, I. Shatsky, 2011, Journal of molecular biology.

[Efficient cap-dependent in vitro and in vivo translation of mammalian mRNAs with long and highly structured 5'-untranslated regions].

I. Terenin, D. Andreev, S. Dmitriev, 2009, Molekuliarnaia biologiia.

Cell death or survival: Insights into the role of mRNA translational control.

P. Ivanov, S. Dmitriev, Nupur Bhatter, 2023, Seminars in cell & developmental biology.

Late Diagnosis of POMC Deficiency and In Vitro Evidence of Residual Translation From Allele With c.-11C>A Mutation

S. Dmitriev, K. A. Akulich, A. Tiulpakov, 2016, The Journal of clinical endocrinology and metabolism.

svist4get: a simple visualization tool for genomic tracks from sequencing experiments

V. Gladyshev, I. Kulakovskiy, S. Dmitriev, 2019, BMC Bioinformatics.

Robust expression of transgenes in Drosophila melanogaster

R. Andino, S. Dmitriev, Peter V. Lidsky, 2022, bioRxiv.

Monitoring integrated stress response in live Drosophila

R. Andino, S. Dmitriev, Peter V. Lidsky, 2023, bioRxiv.

Adequate system for studying translation initiation on the human retrotransposon L1 mRNA in vitro

I. Terenin, D. Andreev, S. Dmitriev, 2006, Molecular Biology.

Human-specific endogenous retroviral insert serves as an enhancer for the schizophrenia-linked gene PRODH

M. Suntsova, A. Garazha, A. Aliper, 2013, Proceedings of the National Academy of Sciences.

Multi-omic rejuvenation and lifespan extension on exposure to youthful circulation

A. Lu, V. Gladyshev, A. Bareja, 2023, Nature Aging.

The bacterial toxin RelE induces specific mRNA cleavage in the A site of the eukaryote ribosome.

M. Ehrenberg, V. Hauryliuk, I. Terenin, 2007, RNA.