S. Matsika

发表

Solvatochromic shifts of uracil and cytosine using a combined multireference configuration interaction/molecular dynamics approach and the fragment molecular orbital method.

K. Kistler, S. Matsika, Spiridoula Matsika, 2009, The journal of physical chemistry. A.

High-multiplicity natural orbitals in multireference configuration interaction for excited state potential energy surfaces.

S. Matsika, Zhen Lu, 2013, The journal of physical chemistry. A.

Closed-loop learning control of isomerization using shaped ultrafast laser pulses in the deep ultraviolet.

Thomas Weinacht, B. Pearson, S. Matsika, 2009, The Journal of chemical physics.

The generality of the GUGA MRCI approach in COLUMBUS for treating complex quantum chemistry.

D. Yarkony, M. Barbatti, F. Plasser, 2020, The Journal of chemical physics.

Contrasting photophysical properties of star-shaped vs linear perylene diimide complexes.

F. Spano, K. Kistler, S. Matsika, 2013, Journal of the American Chemical Society.

Modeling the Ultrafast Electron Attachment Dynamics of Solvated Uracil.

M. Klein, S. Matsika, Cate S. Anstöter, 2021, The journal of physical chemistry. A.

Understanding the Interplay between the Nonvalence and Valence States of the Uracil Anion upon Monohydration.

S. Matsika, Cate S. Anstöter, 2020, The journal of physical chemistry. A.

Description of Two-Particle One-Hole Electronic Resonances Using Orbital Stabilization Methods.

S. Matsika, Mushir Thodika, Nathan Mackouse, 2020, The journal of physical chemistry. A.

Comparative study of methodologies for calculating metastable states of small to medium-sized molecules.

Tolga N. V. Karsili, S. Matsika, Mushir Thodika, 2019, The Journal of chemical physics.

University of Groningen Calculations of non-adiabatic couplings within equation-of-motion coupled-cluster framework

A. Krylov, S. Matsika, S. Faraji, 2018 .

Calculations of non-adiabatic couplings within equation-of-motion coupled-cluster framework: Theory, implementation, and validation against multi-reference methods.

A. Krylov, S. Matsika, S. Faraji, 2018, The Journal of chemical physics.

Strong-field- versus weak-field-ionization pump-probe spectroscopy

P. Marquetand, T. Rozgonyi, S. Matsika, 2018, Physical Review A.

Ultrafast internal conversion dynamics of highly excited pyrrole studied with VUV/UV pump probe spectroscopy.

S. Matsika, Yusong Liu, S. Horton, 2017, The Journal of chemical physics.

Actinyl Ions in Cs2UO2Cl4

S. Matsika, R. Pitzer, 2001 .

An ab initio study of substituent effects on the excited states of purine derivatives.

S. Matsika, E. Mburu, 2008, The journal of physical chemistry. A.

On the accessibility to conical intersections in purines: hypoxanthine and its singly protonated and deprotonated forms.

S. Matsika, Juan P. Villabona-Monsalve, J. Peón, 2012, Journal of the American Chemical Society.

Bonded excimer formation in π-stacked 9-methyladenine dimers.

S. Matsika, Vincent A Spata, 2013, The journal of physical chemistry. A.

Excited state dynamics of cis,cis-1,3-cyclooctadiene: UV pump VUV probe time-resolved photoelectron spectroscopy.

S. Matsika, Yusong Liu, T. Weinacht, 2020, The Journal of chemical physics.

Ultrafast excited-state dynamics and vibrational cooling of 8-oxo-7,8-dihydro-2'-deoxyguanosine in D2O.

S. Matsika, Zhen Lu, B. Kohler, 2013, The journal of physical chemistry. A.

Two-dimensional fourier transform spectroscopy of adenine and uracil using shaped ultrafast laser pulses in the deep UV.

S. Matsika, T. Weinacht, M. Kotur, 2012, The journal of physical chemistry. A.

Distinguishing between relaxation pathways by combining dissociative ionization pump probe spectroscopy and ab initio calculations: a case study of cytosine.

K. Kistler, S. Matsika, T. Weinacht, 2011, The Journal of chemical physics.

Photophysical pathways of cytosine in aqueous solution.

K. Kistler, S. Matsika, 2010, Physical chemistry chemical physics : PCCP.

Two-dimensional ultrafast fourier transform spectroscopy in the deep ultraviolet.

S. Matsika, T. Weinacht, Chien-hung Tseng, 2009, Optics express.

Quantum Mechanical Studies of the Photophysics of DNA and RNA Bases

K. Kistler, S. Matsika, 2009 .

Excited electronic states and photophysics of uracil–water complexes

A. Yoshikawa, S. Matsika, 2008 .

Electronic Structure and Spectra of Actinyl Ions

S. R. Brozell, S. Matsika, R. Pitzer, 2001 .

Modified nucleobases.

S. Matsika, 2015, Topics in current chemistry.

Pathways for fluorescence quenching in 2-aminopurine π-stacked with pyrimidine nucleobases.

S. Matsika, Jingxin Liang, 2011, Journal of the American Chemical Society.

Atomic orbital basis sets for use with effective core potentials

S. R. Brozell, S. Matsika, R. Pitzer, 2000 .

Quantitative detection of singlet O2 by cavity-enhanced absorption.

Skip Williams, D. Yarkony, Manish X. Gupta, 2004, Optics letters.

Conical intersections and the nonadiabatic reactions H2O+O(3P)↔OH(A 2Σ+)+OH(X 2Π)

D. Yarkony, S. Matsika, 2002 .

Origins of Photodamage in Pheomelanin Constituents: Photochemistry of 4-Hydroxybenzothiazole.

Tolga N. V. Karsili, S. Matsika, T. Karsili, 2018, The journal of physical chemistry. A.

A Unique QP Partitioning and Siegert Width Using Real-Valued Continuum-Remover Potential.

S. Matsika, Y. Sajeev, Mushir Thodika, 2022, Journal of chemical theory and computation.

Modeling the Electronic Absorption Spectra of the Indocarbocyanine Cy3

S. Matsika, A. Marcus, Mohammed I. Sorour, 2022, Molecules.

Intersystem crossing in the exit channel

S. Matsika, A. Suits, Alexander Kamasah, 2018, Nature Chemistry.

Controlling the dissociation dynamics of acetophenone radical cation through excitation of ground and excited state wavepackets

K. Tibbetts, S. Matsika, R. Levis, 2015 .

Photochemical Formation of Cyclobutane Pyrimidine Dimers in DNA through Electron Transfer from a Flanking Base.

S. Matsika, Wook Lee, 2018, Chemphyschem : a European journal of chemical physics and physical chemistry.

Conical Intersections in Molecular Systems

S. Matsika, 2007 .

Conical Intersections and the Spin‐Orbit Interaction

D. Yarkony, S. Matsika, 2003 .

Measurement of an Electronic Resonance in a Ground-State, Gas-Phase Acetophenone Cation via Strong-Field Mass Spectrometry.

S. Matsika, R. Levis, D. Romanov, 2013, The journal of physical chemistry letters.

Projected Complex Absorbing Potential Multireference Configuration Interaction Approach for Shape and Feshbach Resonances.

S. Matsika, Mushir Thodika, 2022, Journal of chemical theory and computation.

Nonadiabatic Excited State Dynamics of Organic Chromophores: Take-Home Messages.

S. Matsika, Yusong Liu, T. Weinacht, 2022, The journal of physical chemistry. A.

Excimers and Exciplexes in Photoinitiated Processes of Oligonucleotides.

S. Matsika, Vincent A Spata, Wook Lee, 2016, The journal of physical chemistry letters.

Two- and three-state conical intersections in the uracil cation

S. Matsika, 2008 .

On the electronically excited states of uracil.

K. Kowalski, M. Valiev, P. Fan, 2008, Journal of Physical Chemistry A.

Excited State Relaxation of Neutral and Basic 8-Oxoguanine.

S. Matsika, Zhen Lu, B. Kohler, 2015, The journal of physical chemistry. B.

Excited-state tautomerization of gas-phase cytosine.

S. Matsika, Catherine G Triandafillou, Catherine G. Triandafillou, 2013, The journal of physical chemistry. A.

Ultrafast excited state dynamics of allopurinol, a modified DNA base.

S. Matsika, William Rodríguez-Córdoba, Juan P. Villabona-Monsalve, 2013, The journal of physical chemistry. A.

Following Ultrafast Radiationless Relaxation Dynamics With Strong Field Dissociative Ionization: A Comparison Between Adenine, Uracil, and Cytosine

S. Matsika, T. Weinacht, M. Kotur, 2012, IEEE Journal of Selected Topics in Quantum Electronics.

Combining dissociative ionization pump-probe spectroscopy and ab initio calculations to interpret dynamics and control through conical intersections.

S. Matsika, T. Weinacht, M. Kotur, 2011, Faraday discussions.

Substituent Effects on the Absorption and Fluorescence Properties of Anthracene.

S. Matsika, Vincent A Spata, Salsabil Abou-Hatab, 2017, The journal of physical chemistry. A.

Intensities in the spectra of actinyl ions.

D. Reed, S. Matsika, R. Pitzer, 2000 .

Mechanistic insights into photoinduced damage of DNA and RNA nucleobases in the gas phase and in bulk solution.

Tolga N. V. Karsili, S. Matsika, Pratip Chakraborty, 2017, Faraday discussions.

QM/MM studies reveal pathways leading to the quenching of the formation of thymine dimer photoproduct by flanking bases.

S. Matsika, Wook Lee, 2015, Physical chemistry chemical physics : PCCP.

Effective Fragment Potentials for Microsolvated Excited and Anionic States.

S. Matsika, Cate S. Anstöter, Mushir Thodika, 2022, The journal of physical chemistry. A.

Modeling solvation effects on absorption and fluorescence spectra of indole in aqueous solution.

V. Carnevale, S. Matsika, Salsabil Abou-Hatab, 2021, The Journal of chemical physics.

Theoretical Investigation of Positional Substitution and Solvent Effects on n-Cyanoindole Fluorescent Probes.

S. Matsika, Salsabil Abou-Hatab, 2019, The journal of physical chemistry. B.

Nonadiabatic events and conical intersections.

Pascal Krause, S. Matsika, Pascal Krause, 2011, Annual review of physical chemistry.

6MAP, a fluorescent adenine analogue, is a probe of base flipping by DNA photolyase.

S. Matsika, Kongsheng Yang, R. Stanley, 2007, The journal of physical chemistry. B.

Exact-Factorization-Based Surface Hopping for Multistate Dynamics.

N. Maitra, S. Matsika, P. Vindel-Zandbergen, 2021, The journal of physical chemistry letters.

Electronic Resonances of Nucleobases Using Stabilization Methods.

S. Matsika, Mark A Fennimore, 2018, The journal of physical chemistry. A.

Radiationless Decay of Excited States of Uracil through Conical Intersections

S. Matsika, 2004 .

Role of excitonic coupling and charge-transfer states in the absorption and CD spectra of adenine-based oligonucleotides investigated through QM/MM simulations.

S. Matsika, Vincent A Spata, Spiridoula Matsika, 2014, The journal of physical chemistry. A.

The Fluorescence Mechanism of 5‐Methyl‐2‐Pyrimidinone: An Ab Initio Study of a Fluorescent Pyrimidine Analog †

K. Kistler, S. Matsika, 2007, Photochemistry and photobiology.

What we can learn from the norms of one-particle density matrices, and what we can't: some results for interstate properties in model singlet fission systems.

Anna I Krylov, Xintian Feng, A. Krylov, 2014, The journal of physical chemistry. A.

Molecular Double Ionization Using Strong Field Few-Cycle Laser Pulses.

S. Matsika, T. Weinacht, P. Sándor, 2016, The journal of physical chemistry. A.

Spectroscopy and Theoretical Modeling of Tetracene Anion Resonances.

K. D. Wilson, S. Matsika, Etienne Garand, 2022, The journal of physical chemistry letters.

Photodissociation of the vinoxy radical through conical, and avoided, intersections

D. Yarkony, S. Matsika, 2002 .

State-resolved distribution of OH X 2Pi products arising from electronic quenching of OH A 2Sigma+ by N2.

S. Matsika, M. Lester, C. Murray, 2009, The Journal of chemical physics.

Conformational and electronic effects on the formation of anti cyclobutane pyrimidine dimers in G-quadruplex structures.

S. Matsika, Wook Lee, 2017, Physical chemistry chemical physics : PCCP.

A benchmark of excitonic couplings derived from atomic transition charges.

F. Spano, K. Kistler, S. Matsika, 2013, The journal of physical chemistry. B.

Mechanisms of H and CO loss from the uracil nucleobase following low energy electron irradiation.

Tolga N. V. Karsili, S. Matsika, Mark A Fennimore, 2017, Physical chemistry chemical physics : PCCP.

Absorption, circular dichroism, and photoluminescence in perylene diimide bichromophores: polarization-dependent H- and J-aggregate behavior.

F. Spano, K. Kistler, S. Matsika, 2012, The journal of physical chemistry. B.

On the effects of spin-orbit coupling on conical intersection seams in molecules with an odd number of electrons. I. Locating the seam

D. Yarkony, S. Matsika, 2001 .

Effect of dynamic correlation on the ultrafast relaxation of uracil in the gas phase.

S. Matsika, Yusong Liu, T. Weinacht, 2020, Faraday discussions.

Exciplexes and conical intersections lead to fluorescence quenching in π-stacked dimers of 2-aminopurine with natural purine nucleobases

S. Matsika, Jingxin Liang, Q. L. Nguyen, 2013, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

Mechanistic Aspects of the Effect of Flanking Nucleotide Sequence on CPD Formation and CPD Self-Repair in DNA.

S. Matsika, Wook Lee, 2022, The journal of physical chemistry. B.

Nuclear dynamics for a three-state Jahn-Teller model system.

Pascal Krause, S. Matsika, 2012, The Journal of chemical physics.

Excited state dynamics of cis,cis-1,3-cyclooctadiene: Non-adiabatic trajectory surface hopping.

S. Matsika, Yusong Liu, T. Weinacht, 2020, The Journal of chemical physics.

Coexistence of Different Electron-Transfer Mechanisms in the DNA Repair Process by Photolyase.

S. Matsika, Wook Lee, G. Kodali, 2016, Chemistry.

Surface hopping investigation of the relaxation dynamics in radical cations.

S. Matsika, T. Weinacht, Mariana Assmann, 2016, The Journal of chemical physics.

Fragmentation pathways in the uracil radical cation.

S. Matsika, T. Weinacht, M. Kotur, 2012, The journal of physical chemistry. A.

Strong Field Double Ionization of Formaldehyde Investigated Using Momentum Resolved Covariance Imaging and Trajectory Surface Hopping.

S. Matsika, Chuan-ming Cheng, T. Weinacht, 2022, The journal of physical chemistry. A.

Conformer-Specific Dissociation Dynamics in Dimethyl Methylphosphonate Radical Cation

K. Tibbetts, S. Matsika, Jacob M. Shusterman, 2022, Molecules.

Electron correlation in channel-resolved strong-field molecular double ionization

S. Matsika, Chuan-ming Cheng, T. Weinacht, 2019, Physical Review A.

The origin of fluorescence in DNA thio-analogues

Tolga N. V. Karsili, S. Matsika, Mushir Thodika, 2018, Chemical Physics.

Electron-induced origins of prebiotic building blocks of sugars: mechanism of self-reactions of a methanol anion dimer.

Tolga N. V. Karsili, S. Matsika, Mark A Fennimore, 2018, Physical chemistry chemical physics : PCCP.

Photophysical properties of pyrrolocytosine, a cytosine fluorescent base analogue.

S. Matsika, Vincent A Spata, Q. L. Nguyen, 2016, Physical chemistry chemical physics : PCCP.

Time Resolved Photoelectron Spectroscopy as a Test of Electronic Structure and Nonadiabatic Dynamics.

S. Matsika, Yusong Liu, T. Weinacht, 2021, The journal of physical chemistry letters.

Beyond two-state conical intersections. Three-state conical intersections in low symmetry molecules: the allyl radical.

D. Yarkony, S. Matsika, 2003, Journal of the American Chemical Society.

Strong-Field Molecular Ionization from Multiple Orbitals

S. Matsika, T. Weinacht, M. Kotur, 2011 .

Intersecting Conical Intersection Seams: Their Location, Representation, and Effect on Local Topography

D. Yarkony, S. Matsika, 2002 .

Accidental conical intersections of three states of the same symmetry. I. Location and relevance

D. Yarkony, S. Matsika, 2002 .

Measurement of ionic resonances in alkyl phenyl ketone cations via infrared strong field mass spectrometry.

S. Matsika, R. Levis, D. Romanov, 2013, The journal of physical chemistry. A.

Three-state conical intersections in cytosine and pyrimidinone bases.

K. Kistler, S. Matsika, 2008, The Journal of chemical physics.

The influence of excited state topology on wavepacket delocalization in the relaxation of photoexcited polyatomic molecules.

Pascal Krause, S. Matsika, T. Weinacht, 2012, The Journal of chemical physics.

Photophysical deactivation pathways in adenine oligonucleotides.

S. Matsika, Vincent A Spata, 2015, Physical chemistry chemical physics : PCCP.

Change in electronic structure upon optical excitation of 8-vinyladenosine: an experimental and theoretical study.

K. Kistler, S. Matsika, G. Kodali, 2010, The journal of physical chemistry. A.

2-Aminopurine excited state electronic structure measured by stark spectroscopy.

K. Kistler, S. Matsika, G. Kodali, 2008, The journal of physical chemistry. B.

Electronic Spectrum of the NpO22+ and NpO2+ Ions.

S. Matsika, R. Pitzer, 2010 .

Dyson norms in XUV and strong-field ionization of polyatomics: Cytosine and uracil

Serguei Patchkovskii, Michael Spanner, Thomas Weinacht, 2012 .

Three-state conical intersections in nucleic acid bases.

S. Matsika, 2005, The journal of physical chemistry. A.

Electronic Structure Methods for the Description of Nonadiabatic Effects and Conical Intersections.

S. Matsika, 2021, Chemical reviews.

Ultrafast relaxation dynamics of uracil probed via strong field dissociative ionization.

M. Spanner, S. Matsika, T. Weinacht, 2013, The journal of physical chemistry. A.

Accurate Modeling of Excitonic Coupling in Cyanine Dye Cy3.

K. Kistler, S. Matsika, A. Marcus, 2021, The journal of physical chemistry. A.

Strong Field Adiabatic Ionization Prepares a Launch State for Coherent Control.

S. Matsika, R. Levis, D. Romanov, 2014, The journal of physical chemistry letters.

Ultrafast photoinduced processes in polyatomic molecules: Electronic structure, dynamics and spectroscopy

S. Matsika, Y. Tanimura, M. Gelin, 2018, Chemistry Physics.

Excited-state energies and electronic couplings of DNA base dimers.

K. Kistler, S. Matsika, Zhen Lu, 2010, The journal of physical chemistry. B.

High-Multiplicity Natural Orbitals in Multireference Configuration Interaction for Excited States.

S. Matsika, Zhen Lu, 2012, Journal of chemical theory and computation.

Quadruple coincidence measurement of electron correlation in strong-field molecular double ionization

S. Matsika, Chuan-ming Cheng, T. Weinacht, 2018 .

Photoelectron spectrum and dynamics of the uracil cation.

S. Matsika, H. Köppel, Mariana Assmann, 2015, The journal of physical chemistry. A.

Controlling Photorelaxation in Uracil with Shaped Laser Pulses: A Theoretical Assessment.

R. de Vivie-Riedle, D. Keefer, Sebastian Thallmair, 2017, Journal of the American Chemical Society.

Excited electronic states of the cyclic isomers of O2 and SO2.

S. Matsika, R. Elliott, R. Levis, 2005, The journal of physical chemistry. A.

Core-excited and shape resonances of uracil.

S. Matsika, Mark A Fennimore, 2016, Physical chemistry chemical physics : PCCP.

Dissociative electron attachment to carbon dioxide via the 2$\Pi${}u shape resonance

A. Belkacem, S. Matsika, D. Slaughter, 2013, 1305.5002.

Radical cation spectroscopy of substituted alkyl phenyl ketones via tunnel ionization

K. Tibbetts, S. Matsika, R. Levis, 2014 .

Theoretical studies of the excited states of p-cyanophenylalanine and comparisons with the natural amino acids phenylalanine and tyrosine

S. Matsika, S. Meloni, 2014, Theoretical Chemistry Accounts.

Graph Convolution Neural Network for predicting Photo-excited State Properties of Indole C8H7N Absorption Spectra

S. Matsika, Pratip Chakraborty, T. Nguyen, 2021 .

Using transition density models to interpret experimental optical spectra of exciton-coupled cyanine (iCy3)2 dimer probes of local DNA conformations at or near functional protein binding sites

P. V. von Hippel, K. Kistler, S. Matsika, 2023, bioRxiv.

Role of charge transfer states into the formation of cyclobutane pyrimidine dimers in DNA.

S. Matsika, Wook Lee, 2019, Faraday discussions.

On the effects of spin–orbit coupling on conical intersection seams in molecules with an odd number of electrons. II. Characterizing the local topography of the seam

D. Yarkony, S. Matsika, 2001 .

Unravelling the Origin of the Vibronic Spectral Signatures in an Excitonically Coupled Indocarbocyanine Cy3 Dimer.

S. Matsika, Mohammed I Sorour, Andrew H Marcus, 2023, The journal of physical chemistry. A.

Using transition density models to interpret experimental optical spectra of exciton-coupled cyanine (iCy3)2 dimer probes of local DNA conformations at or near functional protein binding sites

P. V. von Hippel, K. Kistler, S. Matsika, 2023, bioRxiv.

On the accessibility to conical intersections in purines: hypoxanthine and its singly protonated and deprotonated forms.

S. Matsika, Juan P. Villabona-Monsalve, J. Peón, 2012, Journal of the American Chemical Society.

Conical intersections of three electronic states affect the ground state of radical species with little or no symmetry: pyrazolyl.

D. Yarkony, S. Matsika, 2003, Journal of the American Chemical Society.

Radiationless decay mechanism of cytosine: an ab initio study with comparisons to the fluorescent analogue 5-methyl-2-pyrimidinone.

K. Kistler, S. Matsika, 2007, The journal of physical chemistry. A.

Stabilization of triplet biradical intermediate of 5-methylcytosine enhances cyclobutane pyrimidine dimer (CPD) formation in DNA.

S. Matsika, Wook Lee, 2020, Chemistry.

Ultrafast relaxation dynamics of uracil probed via strong field dissociative ionization.

M. Spanner, S. Matsika, T. Weinacht, 2013, The journal of physical chemistry. A.

Molecular Double Ionization Using Strong Field Few-Cycle Laser Pulses.

S. Matsika, T. Weinacht, P. Sándor, 2016, The journal of physical chemistry. A.

Spin−Orbit Coupling and Conical Intersections. IV. A Perturbative Determination of the Electronic Energies, Derivative Couplings, and a Rigorous Diabatic Representation near a Conical Intersection. The General Case†

D. Yarkony, S. Matsika, 2002 .

Spin-orbit coupling and conical intersections in molecules with an odd number of electrons. III. A perturbative determination of the electronic energies, derivative couplings and a rigorous diabatic representation near a conical intersection

D. Yarkony, S. Matsika, 2002 .

Introduction: Theoretical Modeling of Excited State Processes.

A. Krylov, S. Matsika, 2018, Chemical reviews.