C. Midoux

发表

Interpretation and approximation tools for big, dense Markov chain transition matrices in ecology and evolution

K. Reichel, Valentin Bahier, C. Midoux, 2014, 1407.2548.

Transposition Behavior Revealed by High-Resolution Description of Pseudomonas Aeruginosa Saltovirus Integration Sites

G. Vergnaud, C. Midoux, C. Pourcel, 2018, Viruses.

Methane production and microbial community acclimation of five manure inocula during psychrophilic anaerobic digestion of swine manure

S. Barrington, F. Béline, C. Midoux, 2022, Journal of Cleaner Production.

The Basis for Natural Multiresistance to Phage in Pseudomonas aeruginosa

G. Vergnaud, C. Midoux, C. Pourcel, 2020, Antibiotics.

The First Horse Gut Microbiome Gene Catalog Reveals That Rare Microbiome Ensures Better Cardiovascular Fitness During Endurance Racing

E. Barrey, C. Robert, N. Mach, 2022 .

Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics

M. Mariadassou, V. Loux, M. Krupovic, 2022, Environmental microbiology.

Investigation of the Phageome and Prophages in French Cider, a Fermented Beverage

C. Midoux, O. Rué, M. Dalmasso, 2022, Microorganisms.

Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes

E. Barrey, L. Le Moyec, C. Robert, 2022, Communications Biology.

Upscaling of Microbial Electrolysis Cell Integrating Microbial Electrosynthesis: Insights, Challenges and Perspectives

Elie Desmond-Le Quéméner, T. Bouchez, R. Lacroix, 2019, bioRxiv.

Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory

C. Midoux, O. Rué, E. Dugat-Bony, 2022, Viruses.

Oxygen-reducing bidirectional microbial electrodes designed in real domestic wastewater.

B. Erable, A. Bergel, C. Midoux, 2021, Bioresource technology.

The electrochemical microbial tree: A new concept for wastewater treatment

B. Erable, L. Etcheverry, A. Bergel, 2022, Chemical Engineering Journal.

The first horse gut microbiome gene catalog reveals that rare microbiome ensures better cardiovascular fitness in endurance horses

E. Barrey, L. Le Moyec, C. Robert, 2022, bioRxiv.

Metataxonomics, metagenomics, metabolomics analysis of the influence of temperature modification in full-scale anaerobic digesters.

D. Rutledge, L. Mazéas, D. Conteau, 2021, Bioresource technology.

Investigation of Pseudomonas aeruginosa strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption

G. Vergnaud, C. Midoux, C. Pourcel, 2019, PloS one.

Taxon Appearance From Extraction and Amplification Steps Demonstrates the Value of Multiple Controls in Tick Microbiota Analysis

M. Mariadassou, M. Vayssier-Taussat, C. Midoux, 2019, bioRxiv.

Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions

M. Mariadassou, J. Chiquet, S. Robin, 2020, bioRxiv.

A carrier state is established in Pseudomonas aeruginosa by phage LeviOr01, a newly isolated ssRNA levivirus.

G. Vergnaud, C. Midoux, C. Pourcel, 2017, The Journal of general virology.

Microbial and functional characterization of granulated sludge from full-scale UASB thermophilic reactor applied to sugarcane vinasse treatment

C. Midoux, F. P. Camargo, I. Sakamoto, 2022, Environmental technology.

Large Preferred Region for Packaging of Bacterial DNA by phiC725A, a Novel Pseudomonas aeruginosa F116-Like Bacteriophage

Y. Hauck, G. Vergnaud, C. Midoux, 2017, PloS one.

Pseudolysogeny and sequential mutations build multiresistance to virulent bacteriophages in Pseudomonas aeruginosa.

Y. Hauck, G. Vergnaud, C. Midoux, 2016, Microbiology.

Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d’Ivoire

G. Vergnaud, C. Midoux, C. Pourcel, 2015, PloS one.

Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history

S. Schbath, M. Mariadassou, P. Forterre, 2021, BMC Genomics.

Interpretation and approximation tools for big, dense Markov chain transition matrices in population genetics

Nicolas Parisey, Jean-Pierre Masson, Katja Reichel, 2015, Algorithms for Molecular Biology.

Denitrifying bio-cathodes developed from constructed wetland sediments exhibit electroactive nitrate reducing biofilms dominated by the genera Azoarcus and Pontibacter.

T. Bouchez, F. Barrière, J. Tournebize, 2021, Bioelectrochemistry.

Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history

S. Schbath, M. Mariadassou, P. Forterre, 2021, BMC genomics.

Assessing the quality of fresh Whitemouth croaker (Micropogonias furnieri) meat based on micro‐organism and histamine analysis using NGS, qPCR and HPLC‐DAD

C. Midoux, O. Rué, J. Frazzon, 2019, Journal of applied microbiology.

Complete Genome Sequence of PM105, a New Pseudomonas aeruginosa B3-Like Transposable Phage

C. Midoux, C. Pourcel, V. Krylov, 2016, Genome Announcements.

Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition by ammonia and phenol.

S. Déjean, K. Lê Cao, C. Midoux, 2020, Bioresource technology.

Study of a Pilot Scale Microbial Electrosynthesis Reactor for Organic Waste Biorefinery

T. Bouchez, R. Lacroix, A. Yaqoob, 2023, Energies.

Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition by ammonia and phenol

S. Déjean, K. Lê Cao, C. Midoux, 2020, bioRxiv.

Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions

M. Mariadassou, J. Chiquet, M. Vayssier-Taussat, 2021, Microbiome.

Impacts of disinfected wastewater irrigation on soil characteristics, microbial community composition, and crop yield

M. Mariadassou, C. Midoux, Ariane Bize, 2022, Blue-Green Systems.

Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater.

M. Mariadassou, V. Loux, T. Bouchez, 2019, The Science of the total environment.

Molecular approaches to uncover phage-lactic acid bacteria interactions in a model community simulating fermented beverages.

C. Monnet, C. Midoux, M. Dalmasso, 2022, Food microbiology.

Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions.

M. Mariadassou, V. Loux, C. Midoux, 2021, Journal of environmental management.

Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition Author names and affiliations

S. Déjean, C. Midoux, Olivier Chapleur, 2020 .

Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater.

M. Mariadassou, V. Loux, T. Bouchez, 2019, The Science of the total environment.

Complete Genome Sequences of Pseudomonas aeruginosa Phages vB_PaeP_PcyII-10_P3P1 and vB_PaeM_PcyII-10_PII10A

G. Vergnaud, C. Midoux, C. Pourcel, 2016, Genome Announcements.