Chungong Yu

Deriving the probabilities of water loss and ammonia loss for amino acids from tandem mass spectra.

Changning Liu, Dongbo Bu, Shiwei Sun, 2008, Journal of proteome research.

A Fragmentation Event Model for Peptide Identification by Mass Spectrometry

Yu Lin, Dongbo Bu, Shiwei Sun, 2008, RECOMB.

A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data

Suhua Chang, Zhuo Zhang, Dongbo Bu, 2006, BMC Bioinformatics.

Accurate and efficient protein sequence design through learning concise local environment of residues

D. Bu, Shiwei Sun, Weinan Zheng, 2022, bioRxiv.

Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms

D. Bu, Weinan Zheng, Haicang Zhang, 2023, Genomics, proteomics & bioinformatics.

An Iterative Algorithm to Quantify Factors Influencing peptide Fragmentation during Tandem Mass Spectrometry

CHUNGONG YU, YU LIN, SHIWEI SUN, 2007, J. Bioinform. Comput. Biol..

Discovering and Validating Neoantigens by Mass Spectrometry-based Immunopeptidomics and Deep Learning

Ngoc Hieu Tran, L. Xin, B. Shan, 2024, bioRxiv.