Hoon Kim

发表

CRISPR‐Cas9 editing of CAFFEOYL SHIKIMATE ESTERASE 1 and 2 shows their importance and partial redundancy in lignification in Populus tremula × P. alba

W. Boerjan, Jack P. Wang, Ruben Vanholme, 2021, Plant biotechnology journal.

Lignins: Natural polymers from oxidative coupling of 4-hydroxyphenyl- propanoids

Jørgen Holst Christensen, W. Boerjan, J. H. Christensen, 2004, Phytochemistry Reviews.

Downregulation of Cinnamoyl-Coenzyme A Reductase in Poplar: Multiple-Level Phenotyping Reveals Effects on Cell Wall Polymer Metabolism and Structure[W]

B. Sundberg, J. Grima-Pettenati, V. Storme, 2007, The Plant Cell Online.

Understanding the Physicochemical Characteristics and the Improved Enzymatic Saccharification of Corn Stover Pretreated with Aqueous and Gaseous Ammonia

J. Ralph, Xuejun Pan, Jun Seok Kim, 2015, BioEnergy Research.

Involvement of CesA4, CesA7-A/B and CesA8-A/B in secondary wall formation in Populus trichocarpa wood.

Mark F. Davis, R. Sederoff, J. Ralph, 2019, Tree physiology.

Solution-state 2D NMR of Ball-milled Plant Cell Wall Gels in DMSO-d6

J. Ralph, Hoon Kim, T. Akiyama, 2008, BioEnergy Research.

Incorporation of catechyl monomers into lignins: lignification from the non-phenolic end via Diels–Alder cycloaddition?

W. Boerjan, Ruben Vanholme, J. Ralph, 2021, Green Chemistry.

Silencing CAFFEOYL SHIKIMATE ESTERASE Affects Lignification and Improves Saccharification in Poplar1[OPEN]

W. Boerjan, Ruben Vanholme, G. Goeminne, 2017, Plant Physiology.

Phenylcoumaran Benzylic Ether Reductase Prevents Accumulation of Compounds Formed under Oxidative Conditions in Poplar Xylem[W]

W. Boerjan, B. Vanholme, K. Morreel, 2014, Plant Cell.

An Engineered Monolignol 4-O-Methyltransferase Depresses Lignin Biosynthesis and Confers Novel Metabolic Capability in Arabidopsis[C][W][OA]

J. Ralph, Hoon Kim, Chang-Jun Liu, 2012, Plant Cell.

Whole plant cell wall characterization using solution-state 2D NMR

S. Mansfield, J. Ralph, F. Lu, 2012, Nature Protocols.

Rewired phenolic metabolism and improved saccharification efficiency of a Zea mays cinnamyl alcohol dehydrogenase 2 (zmcad2) mutant.

W. Boerjan, Ruben Vanholme, G. Goeminne, 2020, The Plant journal : for cell and molecular biology.

An “ideal lignin” facilitates full biomass utilization

Ali Hussain Motagamwala, R. Dixon, J. Ralph, 2018, Science Advances.

Characterization and Elimination of Undesirable Protein Residues in Plant Cell Wall Materials for Enhancing Lignin Analysis by Solution-State Nuclear Magnetic Resonance Spectroscopy.

J. Ralph, J. Rencoret, R. Hatfield, 2017, Biomacromolecules.

Saccharification of woody biomass using glycoside hydrolases from Stereum hirsutum.

M. Jeya, Jung-Kul Lee, S. Dhiman, 2012, Bioresource technology.

Exogenous chalcone synthase expression in developing poplar xylem incorporates naringenin into lignins

S. Mansfield, J. Ralph, Soo-Kyeong Jang, 2021, Plant physiology.

Radical Coupling Reactions of Hydroxystilbene Glucosides and Coniferyl Alcohol: A Density Functional Theory Study

J. Ralph, J. Rencoret, J. D. del Río, 2021, Frontiers in Plant Science.

Lignin Monomers Derived from the Flavonoid and Hydroxystilbene Biosynthetic Pathways

J. Ralph, J. Rencoret, A. Gutiérrez, 2021 .

Hydroxystilbene Glucosides Are Incorporated into Norway Spruce Bark Lignin1[OPEN]

J. Ralph, J. Rencoret, J. Gominho, 2019, Plant Physiology.

Variability in Lignin Composition and Structure in Cell Walls of Different Parts of Macaúba (Acrocomia aculeata) Palm Fruit.

J. Ralph, J. Rencoret, A. Gutiérrez, 2018, Journal of agricultural and food chemistry.

Hydroxystilbenes Are Monomers in Palm Fruit Endocarp Lignins1[OPEN]

J. Ralph, J. Rencoret, A. Gutiérrez, 2017, Plant Physiology.

Mass Spectrometry-Based Sequencing of Lignin Oligomers1[C][W][OA]

D. Inzé, W. Boerjan, Ruben Vanholme, 2010, Plant Physiology.

Identifying new lignin bioengineering targets: 1. Monolignol-substitute impacts on lignin formation and cell wall fermentability

J. Ralph, F. Lu, Hoon Kim, 2010, BMC Plant Biology.

Lignin Composition and Structure in Young versus Adult Eucalyptus globulus Plants1

J. Ralph, J. Jiménez-Barbero, J. Rencoret, 2010, Plant Physiology.

Radical coupling reactions of piceatannol and monolignols: A density functional theory study.

J. Ralph, G. Beckham, J. Rencoret, 2019, Phytochemistry.

Preparation of monolignol γ-acetate, γ-p-hydroxycinnamate, and γ-p-hydroxybenzoate conjugates: selective deacylation of phenolic acetates with hydrazine acetate

T. Pearson, J. Ralph, F. Lu, 2013 .

Structural features of alternative lignin monomers associated with improved digestibility of artificially lignified maize cell walls.

J. Ralph, Xuejun Pan, Fengxia Yue, 2019, Plant science : an international journal of experimental plant biology.

A gel-state 2D-NMR method for plant cell wall profiling and analysis: a model study with the amorphous cellulose and xylan from ball-milled cotton linters

J. Ralph, Hoon Kim, 2014 .

COSY catalyses trans–cis isomerization and lactonization in the biosynthesis of coumarins

W. Boerjan, Ruben Vanholme, B. Vanholme, 2019, Nature Plants.

The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence

R. Sederoff, Hairong Wei, Xingtan Zhang, 2022, Nature Plants.

Engineering traditional monolignols out of lignin by concomitant up-regulation of F5H1 and down-regulation of COMT in Arabidopsis.

Jørgen Holst Christensen, A. Rohde, V. Storme, 2010, The Plant journal : for cell and molecular biology.

Signatures of cinnamyl alcohol dehydrogenase deficiency in poplar lignins.

J. Leplé, G. Pilate, L. Jouanin, 2004, Phytochemistry.

Sinapate dehydrodimers and sinapate-ferulate heterodimers in cereal dietary fiber.

J. Ralph, H. Steinhart, R. Hatfield, 2003, Journal of agricultural and food chemistry.

Different Routes for Conifer- and Sinapaldehyde and Higher Saccharification upon Deficiency in the Dehydrogenase CAD11[OPEN]

W. Boerjan, A. Déjardin, G. Pilate, 2017, Plant Physiology.

Density functional theory study on the coupling and reactions of diferuloylputrescine as a lignin monomer.

J. Ralph, J. Rencoret, J. D. del Río, 2022, Phytochemistry.

Coupling and Reactions of Lignols and New Lignin Monomers: A Density Functional Theory Study

J. Ralph, M. Crowley, G. Beckham, 2020 .

Monolignol Benzoates Incorporate into the Lignin of Transgenic Populus trichocarpa Depleted in C3H and C4H

R. Sederoff, Jack P. Wang, J. Ralph, 2020 .

Structural characterization of the lignins from different anatomical parts of macaúba (Acrocomia aculeata) palm fruit

J. Ralph, J. Rencoret, A. B. Evaristo, 2018 .

Protein amino acid residues and a new monolignol conjugate in lignins and their interference with p-hydroxyphenyl (H) unit estimation - Póster presentación

J. Ralph, J. Rencoret, R. Hatfield, 2018 .

Overexpression of the scopoletin biosynthetic pathway enhances lignocellulosic biomass processing

W. Boerjan, Ruben Vanholme, G. Goeminne, 2022, Science advances.

An essential role of caffeoyl shikimate esterase in monolignol biosynthesis in Medicago truncatula.

R. Dixon, J. Ralph, Fang Chen, 2016, The Plant journal : for cell and molecular biology.

Highly Decorated Lignins in Leaf Tissues of the Canary Island Date Palm Phoenix canariensis1[OPEN]

J. Ralph, Hoon Kim, S. D. Karlen, 2017, Plant Physiology.

Characterization of cellobiohydrolase from a newly isolated strain of Agaricus arvencis.

M. Jeya, In-Won Kim, Jung-Kul Lee, 2011, Journal of microbiology and biotechnology.

Maize specialized metabolome networks reveal organ-preferential mixed glycosides

Y. Saeys, W. Boerjan, Ruben Vanholme, 2021, Computational and structural biotechnology journal.

Profiling of Oligolignols Reveals Monolignol Coupling Conditions in Lignifying Poplar Xylem1[w]

John Ralph, Kris Morreel, Wout Boerjan, 2004, Plant Physiology.

Natural acetylation impacts carbohydrate recovery during deconstruction of Populus trichocarpa wood

S. Mansfield, J. Ralph, Hoon Kim, 2017, Biotechnology for Biofuels.

Lignin Monomers from beyond the Canonical Monolignol Biosynthetic Pathway: Another Brick in the Wall

J. Ralph, J. Rencoret, A. Gutiérrez, 2020 .

Multiple-locus Variable-number Tandem Repeat 분석을

Hoon Kim, G. Chai, Seong-Joo Kim, 2011 .

Suppression of 4-Coumarate-CoA Ligase in the Coniferous Gymnosperm Pinus radiata1[W]

J. Ralph, D. Steward, G. Koch, 2008, Plant Physiology.

Caffeoyl Shikimate Esterase (CSE) Is an Enzyme in the Lignin Biosynthetic Pathway in Arabidopsis

John Ralph, Gordon G. Simpson, Bartel Vanholme, 2013, Science.

Peroxidase-dependent cross-linking reactions of p-hydroxycinnamates in plant cell walls

Hans Steinhart, Ronald D. Hatfield, John Ralph, 2004, Phytochemistry Reviews.

Mass spectrometry-based fragmentation as an identification tool in lignomics.

D. Inzé, W. Boerjan, Ruben Vanholme, 2010, Analytical chemistry.

In Vitro Enzymatic Depolymerization of Lignin with Release of Syringyl, Guaiacyl, and Tricin Units

T. Donohue, J. Ralph, Wayne S. Kontur, 2017, Applied and Environmental Microbiology.

Solution-state 2D NMR of ball-milled plant cell wall gels in DMSO-d(6)/pyridine-d(5).

J. Ralph, Hoon Kim, 2010, Organic & biomolecular chemistry.

Effects of Coumarate 3-Hydroxylase Down-regulation on Lignin Structure*

John Ralph, Takuya Akiyama, Richard A Dixon, 2006, Journal of Biological Chemistry.

Two-Dimensional NMR Evidence for Cleavage of Lignin and Xylan Substituents in Wheat Straw Through Hydrothermal Pretreatment and Enzymatic Hydrolysis

P. Kaparaju, C. Felby, J. Ralph, 2012, BioEnergy Research.

Stereochemical Features of Glutathione-dependent Enzymes in the Sphingobium sp. Strain SYK-6 β-Aryl Etherase Pathway

T. Donohue, J. Ralph, F. Lu, 2014, The Journal of Biological Chemistry.

Hydroxystilbene Glucosides Are Incorporated into Norway Spruce Bark Lignin.

J. Ralph, J. Rencoret, J. Gominho, 2019, Plant physiology.

Loss of function of cinnamyl alcohol dehydrogenase 1 leads to unconventional lignin and a temperature-sensitive growth defect in Medicago truncatula

R. Dixon, J. Ralph, Fang Chen, 2013, Proceedings of the National Academy of Sciences.

The Enzyme Activity and Substrate Specificity of Two Major Cinnamyl Alcohol Dehydrogenases in Sorghum (Sorghum bicolor), SbCAD2 and SbCAD41

S. Jun, W. Vermerris, S. Sattler, 2017, Plant Physiology.

Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis

Cranos M. Williams, Mark F. Davis, Fikret Isik, 2018, Nature Communications.

Discovery of Novel Genes Regulating Polysaccharide Biosynthesis and Secretion in Plants

Cliff, B. Dale, C. Wilkerson, 2010 .

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

R. Sederoff, Hairong Wei, J. Ralph, 2013, Proceedings of the National Academy of Sciences.

Biomimetic oxidative copolymerization of hydroxystilbenes and monolignols

J. Ralph, J. Rencoret, J. D. del Río, 2023, Science advances.

Flavonoids naringenin chalcone, naringenin, dihydrotricin, and tricin are lignin monomers in papyrus

J. Ralph, J. Rencoret, A. Gutiérrez, 2021, Plant physiology.

Cell wall fermentation kinetics are impacted more by lignin content and ferulate cross-linking than by lignin composition

J. Ralph, D. Mertens, F. Lu, 2009 .

Naturally p-Hydroxybenzoylated Lignins in Palms

C. Wilkerson, W. Boerjan, S. Mansfield, 2015, BioEnergy Research.

Identification of Grass-specific Enzyme That Acylates Monolignols with p-Coumarate*

C. Wilkerson, J. Ralph, F. Lu, 2012, The Journal of Biological Chemistry.

Structural Characterization of Lignins from Willow Bark and Wood.

J. Ralph, T. Vuorinen, Fengxia Yue, 2018, Journal of agricultural and food chemistry.

Structural Characterization of Lignin from Maize ( Zea mays L.) Fibers: Evidence for Diferuloylputrescine Incorporated into the Lignin Polymer in Maize Kernels.

J. Ralph, J. Rencoret, A. Gutiérrez, 2018, Journal of agricultural and food chemistry.

Identification of the structure and origin of a thioacidolysis marker compound for ferulic acid incorporation into angiosperm lignins (and an indicator for cinnamoyl CoA reductase deficiency).

John Ralph, Wout Boerjan, Jean-Charles Leplé, 2007, The Plant journal : for cell and molecular biology.

Breeding with rare defective alleles (BRDA): a natural Populus nigra HCT mutant with modified lignin as a case study.

M. Morgante, W. Boerjan, Ruben Vanholme, 2013, The New phytologist.

NMR analysis of lignins in CAD-deficient plants. Part 1. Incorporation of hydroxycinnamaldehydes and hydroxybenzaldehydes into lignins.

John Ralph, Takashi Ito, John J MacKay, 2003, Organic & biomolecular chemistry.

Selective Oxidation of Lignin Model Compounds.

J. Ralph, Hoon Kim, Yanding Li, 2018, ChemSusChem.

Small Glycosylated Lignin Oligomers Are Stored in Arabidopsis Leaf Vacuoles

W. Boerjan, B. Vanholme, K. Morreel, 2015, Plant Cell.

Grass lignin acylation: p-coumaroyl transferase activity and cell wall characteristics of C3 and C4 grasses

Ronald D. Hatfield, John Ralph, Kenneth Frost, 2009, Planta.

Protein O-mannosyltransferase A of Aspergillus awamori is involved in O-mannosylation of glucoamylase I.

M. Goto, K. Furukawa, Hoon Kim, 2005, Microbiology.

Mechanistic study of diaryl ether bond cleavage during palladium-catalyzed lignin hydrogenolysis.

J. Ralph, J. Dumesic, S. Stahl, 2020, ChemSusChem.

A Century-Old Mystery Unveiled: Sekizaisou is a Natural Lignin Mutant1[OPEN]

W. Boerjan, S. Kajita, Ruben Vanholme, 2020, Plant Physiology.

Identification of the Structure and Origin of Thioacidolysis Marker Compounds for Cinnamyl Alcohol Dehydrogenase Deficiency in Angiosperms* 210

J. Leplé, G. Pilate, C. Lapierre, 2002, The Journal of Biological Chemistry.

The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis.

C. Wilkerson, J. Ralph, Hoon Kim, 2011, The Plant journal : for cell and molecular biology.

Pith-specific lignification in Nicotiana attenuata as a defense against a stem-boring herbivore.

I. Baldwin, J. Ralph, H. Kaur, 2021, The New phytologist.

Peroxidase-catalyzed oligomerization of ferulic acid esters.

J. Ralph, M. Bunzel, Hoon Kim, 2008, Journal of agricultural and food chemistry.

Mutation of the Inducible ARABIDOPSIS THALIANA CYTOCHROME P450 REDUCTASE2 Alters Lignin Composition and Improves Saccharification1[W][OPEN]

W. Boerjan, Ruben Vanholme, Lisa Sundin, 2014, Plant Physiology.

CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa.

R. Sederoff, Jack P. Wang, J. Ralph, 2018, The New phytologist.

Poplar Lignin structural changes during extraction in γ-valerolactone (GVL)

G. Huber, J. Ralph, J. Dumesic, 2022, Green Chemistry.

Altering carbon allocation in hybrid poplar (Populus alba × grandidentata) impacts cell wall growth and development

C. Hefer, S. Mansfield, J. Ralph, 2017, Plant biotechnology journal.

Quinone Methides in Lignification

Hoon Kim, John Ralph, Paul F. Schatz, 2009 .

Enhancing digestibility and ethanol yield of Populus wood via expression of an engineered monolignol 4-O-methyltransferase

J. Ralph, H. Feng, Hoon Kim, 2016, Nature Communications.

H-lignin can be deposited independently of CINNAMYL ALCOHOL DEHYDROGENASE C and D in Arabidopsis.

C. Chapple, J. Ralph, Hoon Kim, 2022, Plant physiology.

Plant cell wall profiling by fast maximum likelihood reconstruction (FMLR) and region-of-interest (ROI) segmentation of solution-state 2D 1H–13C NMR spectra

J. Markley, R. Chylla, V. Storme, 2013, Biotechnology for Biofuels.

H–C NMR spectra

J. Markley, R. Chylla, V. Storme, 2013 .

Two-Dimensional NMR Evidence for Cleavage of Lignin and Xylan Substituents in Wheat Straw Through Hydrothermal Pretreatment and Enzymatic Hydrolysis

P. Kaparaju, C. Felby, J. Ralph, 2013, BioEnergy Research.

Understanding the Physicochemical Characteristics and the Improved Enzymatic Saccharification of Corn Stover Pretreated with Aqueous and Gaseous Ammonia

J. Ralph, Xuejun Pan, F. Lu, 2016, Bioenergy Research.

Effect of Vesicular-Arbuscular Mycorrhizal (VAM) Fungi on Tolerance of Industrial Effluent Treatment in Datura metal

Hoon Kim, T. Selvaraj, 2004 .

Elucidation of new structures in lignins of CAD- and COMT-deficient plants by NMR.

M Pean, R. Sederoff, W. Boerjan, 2001, Phytochemistry.