Yoseph Barash

发表

From promoter sequence to expression: a probabilistic framework

Nir Friedman, Daphne Koller, Eran Segal, 2002, RECOMB '02.

Context-Specific Bayesian Clustering for Gene Expression Data

Nir Friedman, Yoseph Barash, 2002, J. Comput. Biol..

Context-specific Bayesian clustering for gene expression data

Nir Friedman, Yoseph Barash, N. Friedman, 2001, J. Comput. Biol..

Model-based detection of alternative splicing signals

Brendan J. Frey, Yoseph Barash, Benjamin J. Blencowe, 2010, Bioinform..

Integrative deep models for alternative splicing

Yoseph Barash, Anupama Jha, Matthew R. Gazzara, 2017, bioRxiv.

Modeling dependencies in protein-DNA binding sites

Nir Friedman, Gal Elidan, Yoseph Barash, 2003, RECOMB '03.

Deciphering the splicing code

Brendan J. Frey, Weijun Gao, Ofer Shai, 2010, Nature.

Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays

Nir Friedman, Naftali Kaminski, Yoseph Barash, 2004, Bioinform..

Improving interpretability of deep learning models: splicing codes as a case study

Yoseph Barash, Anupama Jha, Deependra Singh, 2019 .

MAJIQ-SPEL: web-tool to interrogate classical and complex splicing variations from RNA-Seq data

Yoseph Barash, Matthew R. Gazzara, Christopher J. Green, 2017, bioRxiv.

Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates

Yoseph Barash, Scott Norton, Jorge Vaquero-Garcia, 2017 .

CIS: compound importance sampling method for protein-DNA binding site p-value estimation

Nir Friedman, Gal Elidan, Yoseph Barash, 2005, Bioinform..

Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates

Gregory R. Grant, Yoseph Barash, Nicholas F. Lahens, 2017, bioRxiv.

LeafCutter vs. MAJIQ and comparing software in the fast moving field of genomics

Yoseph Barash, Scott Norton, Jorge Vaquero-Garcia, 2018 .

A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites

Nir Friedman, Gill Bejerano, Yoseph Barash, 2001, WABI.

Bayesian prediction of tissue-regulated splicing using RNA sequence and cellular context

Brendan J. Frey, Yoseph Barash, Hui Yuan Xiong, 2011, Bioinform..